Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 743 |
| AciI | CCGC | 3 cut(s) | 746, 907, 959 |
| AclWI | GGATC | 2 cut(s) | 956, 969 |
| AcsI | RAATTY | 3 cut(s) | 237, 368, 1036 |
| AcuI | CTGAAG | 2 cut(s) | 425, 697 |
| AcyI | GRCGYC | 1 cut(s) | 740 |
| AfaI | GTAC | 3 cut(s) | 334, 718, 873 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 409, 577, 910 |
| AgsI | TTSAA | 4 cut(s) | 286, 535, 546, 775 |
| AjnI | CCWGG | 2 cut(s) | 276, 453 |
| AluBI | AGCT | 3 cut(s) | 138, 445, 553 |
| AluI | AGCT | 3 cut(s) | 138, 445, 553 |
| Alw21I | GWGCWC | 2 cut(s) | 201, 864 |
| Alw26I | GTCTC | 2 cut(s) | 341, 706 |
| AlwI | GGATC | 2 cut(s) | 956, 969 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 434, 556 |
| AoxI | GGCC | 1 cut(s) | 1024 |
| ApoI | RAATTY | 3 cut(s) | 237, 368, 1036 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 368, 530 |
| AspLEI | GCGC | 1 cut(s) | 834 |
| AspS9I | GGNCC | 4 cut(s) | 602, 760, 1025, 1048 |
| AsuII | TTCGAA | 2 cut(s) | 648, 1040 |
| AvaII | GGWCC | 3 cut(s) | 602, 760, 1048 |
| BamHI | GGATCC | 1 cut(s) | 961 |
| BanII | GRGCYC | 1 cut(s) | 43 |
| BauI | CACGAG | 1 cut(s) | 894 |
| Bbv12I | GWGCWC | 2 cut(s) | 201, 864 |
| BccI | CCATC | 4 cut(s) | 19, 527, 608, 1001 |
| BceAI | ACGGC | 1 cut(s) | 842 |
| BciT130I | CCWGG | 2 cut(s) | 278, 455 |
| BciVI | GTATCC | 1 cut(s) | 392 |
| BcoDI | GTCTC | 2 cut(s) | 341, 706 |
| BfaI | CTAG | 5 cut(s) | 216, 317, 611, 915, 998 |
| BfuI | GTATCC | 1 cut(s) | 392 |
| Bme1390I | CCNGG | 2 cut(s) | 278, 455 |
| Bme18I | GGWCC | 3 cut(s) | 602, 760, 1048 |
| BmgT120I | GGNCC | 4 cut(s) | 602, 760, 1025, 1048 |
| BmiI | GGNNCC | 2 cut(s) | 31, 963 |
| BmrFI | CCNGG | 2 cut(s) | 278, 455 |
| BmrI | ACTGGG | 1 cut(s) | 999 |
| BmsI | GCATC | 5 cut(s) | 151, 202, 408, 932, 984 |
| BmuI | ACTGGG | 1 cut(s) | 999 |
| Bpu14I | TTCGAA | 2 cut(s) | 648, 1040 |
| BsaAI | YACGTR | 1 cut(s) | 172 |
| BsaHI | GRCGYC | 1 cut(s) | 740 |
| BsaI | GGTCTC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 4 cut(s) | 277, 453, 454, 763 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 409, 577, 910 |
| Bse1I | ACTGG | 3 cut(s) | 385, 833, 994 |
| BseBI | CCWGG | 2 cut(s) | 278, 455 |
| BseDI | CCNNGG | 4 cut(s) | 277, 453, 454, 763 |
| BseGI | GGATG | 5 cut(s) | 189, 399, 519, 999, 1012 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 409, 577, 910 |
| BseMII | CTCAG | 5 cut(s) | 35, 286, 409, 515, 953 |
| BseNI | ACTGG | 3 cut(s) | 385, 833, 994 |
| BseYI | CCCAGC | 1 cut(s) | 549 |
| BshFI | GGCC | 1 cut(s) | 1026 |
| BsiHKAI | GWGCWC | 2 cut(s) | 201, 864 |
| BslFI | GGGAC | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 409, 577, 910 |
| BsmAI | GTCTC | 2 cut(s) | 341, 706 |
| BsmFI | GGGAC | 1 cut(s) | 454 |
| BsnI | GGCC | 1 cut(s) | 1026 |
| Bso31I | GGTCTC | 1 cut(s) | 341 |
| Bsp119I | TTCGAA | 2 cut(s) | 648, 1040 |
| Bsp1286I | GDGCHC | 3 cut(s) | 43, 201, 864 |
| Bsp143I | GATC | 2 cut(s) | 436, 961 |
| BspACI | CCGC | 3 cut(s) | 746, 907, 959 |
| BspANI | GGCC | 1 cut(s) | 1026 |
| BspCNI | CTCAG | 5 cut(s) | 36, 285, 408, 514, 952 |
| BspLI | GGNNCC | 2 cut(s) | 31, 963 |
| BspPI | GGATC | 2 cut(s) | 956, 969 |
| BspT104I | TTCGAA | 2 cut(s) | 648, 1040 |
| BspTNI | GGTCTC | 1 cut(s) | 341 |
| BsrI | ACTGG | 3 cut(s) | 385, 833, 994 |
| BssECI | CCNNGG | 4 cut(s) | 277, 453, 454, 763 |
| BssMI | GATC | 2 cut(s) | 436, 961 |
| BssNI | GRCGYC | 1 cut(s) | 740 |
| BssSI | CACGAG | 1 cut(s) | 894 |
| BssT1I | CCWWGG | 1 cut(s) | 763 |
| Bst2BI | CACGAG | 1 cut(s) | 894 |
| Bst2UI | CCWGG | 2 cut(s) | 278, 455 |
| Bst4CI | ACNGT | 3 cut(s) | 337, 430, 933 |
| Bst6I | CTCTTC | 1 cut(s) | 171 |
| BstACI | GRCGYC | 1 cut(s) | 740 |
| BstBAI | YACGTR | 1 cut(s) | 172 |
| BstBI | TTCGAA | 2 cut(s) | 648, 1040 |
| BstC8I | GCNNGC | 3 cut(s) | 140, 477, 905 |
| BstDEI | CTNAG | 5 cut(s) | 44, 272, 395, 501, 939 |
| BstEII | GGTNACC | 1 cut(s) | 748 |
| BstF5I | GGATG | 5 cut(s) | 189, 399, 519, 999, 1012 |
| BstHHI | GCGC | 1 cut(s) | 834 |
| BstKTI | GATC | 2 cut(s) | 439, 964 |
| BstMAI | GTCTC | 2 cut(s) | 341, 706 |
| BstMBI | GATC | 2 cut(s) | 436, 961 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 920 |
| BstNI | CCWGG | 2 cut(s) | 278, 455 |
| BstNSI | RCATGY | 2 cut(s) | 783, 1058 |
| BstPI | GGTNACC | 1 cut(s) | 748 |
| BstSCI | CCNGG | 2 cut(s) | 276, 453 |
| BstX2I | RGATCY | 1 cut(s) | 961 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 828 |
| BstYI | RGATCY | 1 cut(s) | 961 |
| BsuI | GTATCC | 1 cut(s) | 392 |
| BsuRI | GGCC | 1 cut(s) | 1026 |
| BtsCI | GGATG | 5 cut(s) | 189, 399, 519, 999, 1012 |
| BtsIMutI | CAGTG | 1 cut(s) | 435 |
| Cac8I | GCNNGC | 3 cut(s) | 140, 477, 905 |
| CaiI | CAGNNNCTG | 2 cut(s) | 434, 556 |
| CfoI | GCGC | 1 cut(s) | 834 |
| Cfr13I | GGNCC | 4 cut(s) | 602, 760, 1025, 1048 |
| Csp6I | GTAC | 3 cut(s) | 333, 717, 872 |
| CviAII | CATG | 2 cut(s) | 780, 1055 |
| CviQI | GTAC | 3 cut(s) | 333, 717, 872 |
| DdeI | CTNAG | 5 cut(s) | 44, 272, 395, 501, 939 |
| DpnI | GATC | 2 cut(s) | 438, 963 |
| DpnII | GATC | 2 cut(s) | 436, 961 |
| DraI | TTTAAA | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 1 cut(s) | 171 |
| EarI | CTCTTC | 1 cut(s) | 171 |
| Eco130I | CCWWGG | 1 cut(s) | 763 |
| Eco24I | GRGCYC | 1 cut(s) | 43 |
| Eco31I | GGTCTC | 1 cut(s) | 341 |
| Eco32I | GATATC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 3 cut(s) | 602, 760, 1048 |
| Eco57I | CTGAAG | 2 cut(s) | 425, 697 |
| Eco91I | GGTNACC | 1 cut(s) | 748 |
| EcoO109I | RGGNCCY | 3 cut(s) | 760, 1025, 1048 |
| EcoO65I | GGTNACC | 1 cut(s) | 748 |
| EcoRI | GAATTC | 1 cut(s) | 1036 |
| EcoRII | CCWGG | 2 cut(s) | 276, 453 |
| EcoRV | GATATC | 1 cut(s) | 696 |
| EcoT14I | CCWWGG | 1 cut(s) | 763 |
| EcoT38I | GRGCYC | 1 cut(s) | 43 |
| ErhI | CCWWGG | 1 cut(s) | 763 |
| FaeI | CATG | 2 cut(s) | 783, 1058 |
| FaiI | YATR | 5 cut(s) | 410, 509, 654, 781, 1056 |
| FaqI | GGGAC | 1 cut(s) | 454 |
| FatI | CATG | 2 cut(s) | 779, 1054 |
| FokI | GGATG | 5 cut(s) | 196, 386, 506, 1006, 1019 |
| FriOI | GRGCYC | 1 cut(s) | 43 |
| FspBI | CTAG | 5 cut(s) | 216, 317, 611, 915, 998 |
| GlaI | GCGC | 1 cut(s) | 833 |
| GsaI | CCCAGC | 1 cut(s) | 553 |
| HaeIII | GGCC | 1 cut(s) | 1026 |
| HhaI | GCGC | 1 cut(s) | 834 |
| Hin1I | GRCGYC | 1 cut(s) | 740 |
| Hin1II | CATG | 2 cut(s) | 783, 1058 |
| Hin6I | GCGC | 1 cut(s) | 832 |
| HinP1I | GCGC | 1 cut(s) | 832 |
| HinfI | GANTC | 2 cut(s) | 249, 268 |
| Hpy166II | GTNNAC | 1 cut(s) | 709 |
| Hpy188I | TCNGA | 7 cut(s) | 45, 267, 504, 624, 866, 942, 1020 |
| Hpy188III | TCNNGA | 5 cut(s) | 22, 523, 611, 815, 896 |
| Hpy8I | GTNNAC | 1 cut(s) | 709 |
| HpyAV | CCTTC | 3 cut(s) | 413, 655, 904 |
| HpyCH4III | ACNGT | 3 cut(s) | 337, 430, 933 |
| HpyCH4IV | ACGT | 3 cut(s) | 171, 719, 740 |
| HpyCH4V | TGCA | 2 cut(s) | 84, 425 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 920 |
| HpyF3I | CTNAG | 5 cut(s) | 44, 272, 395, 501, 939 |
| HpySE526I | ACGT | 3 cut(s) | 171, 719, 740 |
| Hsp92I | GRCGYC | 1 cut(s) | 740 |
| Hsp92II | CATG | 2 cut(s) | 783, 1058 |
| HspAI | GCGC | 1 cut(s) | 832 |
| Kzo9I | GATC | 2 cut(s) | 436, 961 |
| LweI | GCATC | 5 cut(s) | 151, 202, 408, 932, 984 |
| MaeI | CTAG | 5 cut(s) | 216, 317, 611, 915, 998 |
| MaeII | ACGT | 3 cut(s) | 171, 719, 740 |
| MaeIII | GTNAC | 3 cut(s) | 151, 430, 748 |
| MalI | GATC | 2 cut(s) | 438, 963 |
| MboI | GATC | 2 cut(s) | 436, 961 |
| MboII | GAAGA | 7 cut(s) | 137, 158, 376, 431, 534, 538, 664 |
| MflI | RGATCY | 1 cut(s) | 961 |
| MhlI | GDGCHC | 3 cut(s) | 43, 201, 864 |
| MluCI | AATT | 4 cut(s) | 237, 286, 368, 1036 |
| MnlI | CCTC | 2 cut(s) | 948, 997 |
| MroXI | GAANNNNTTC | 2 cut(s) | 368, 530 |
| MseI | TTAA | 2 cut(s) | 242, 1060 |
| MspA1I | CMGCKG | 1 cut(s) | 907 |
| MspR9I | CCNGG | 2 cut(s) | 278, 455 |
| MvaI | CCWGG | 2 cut(s) | 278, 455 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 920 |
| NdeII | GATC | 2 cut(s) | 436, 961 |
| NlaIII | CATG | 2 cut(s) | 783, 1058 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 963 |
| NmuCI | GTSAC | 2 cut(s) | 151, 430 |
| NspI | RCATGY | 2 cut(s) | 783, 1058 |
| NspV | TTCGAA | 2 cut(s) | 648, 1040 |
| PasI | CCCWGGG | 1 cut(s) | 454 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 68 |
| PdmI | GAANNNNTTC | 2 cut(s) | 368, 530 |
| PfeI | GAWTC | 2 cut(s) | 249, 268 |
| Ppu21I | YACGTR | 1 cut(s) | 172 |
| PpuMI | RGGWCCY | 2 cut(s) | 760, 1048 |
| Psp5II | RGGWCCY | 2 cut(s) | 760, 1048 |
| Psp6I | CCWGG | 2 cut(s) | 276, 453 |
| PspEI | GGTNACC | 1 cut(s) | 748 |
| PspFI | CCCAGC | 1 cut(s) | 549 |
| PspGI | CCWGG | 2 cut(s) | 276, 453 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 963 |
| PspPI | GGNCC | 4 cut(s) | 602, 760, 1025, 1048 |
| PspPPI | RGGWCCY | 2 cut(s) | 760, 1048 |
| PstNI | CAGNNNCTG | 2 cut(s) | 434, 556 |
| PsuI | RGATCY | 1 cut(s) | 961 |
| RsaI | GTAC | 3 cut(s) | 334, 718, 873 |
| RsaNI | GTAC | 3 cut(s) | 333, 717, 872 |
| SaqAI | TTAA | 2 cut(s) | 242, 1060 |
| Sau3AI | GATC | 2 cut(s) | 436, 961 |
| Sau96I | GGNCC | 4 cut(s) | 602, 760, 1025, 1048 |
| ScrFI | CCNGG | 2 cut(s) | 278, 455 |
| SduI | GDGCHC | 3 cut(s) | 43, 201, 864 |
| SfaNI | GCATC | 5 cut(s) | 151, 202, 408, 932, 984 |
| SfuI | TTCGAA | 2 cut(s) | 648, 1040 |
| SinI | GGWCC | 3 cut(s) | 602, 760, 1048 |
| Sse9I | AATT | 4 cut(s) | 237, 286, 368, 1036 |
| SsiI | CCGC | 3 cut(s) | 746, 907, 959 |
| SspMI | CTAG | 5 cut(s) | 216, 317, 611, 915, 998 |
| StyD4I | CCNGG | 2 cut(s) | 276, 453 |
| StyI | CCWWGG | 1 cut(s) | 763 |
| TaaI | ACNGT | 3 cut(s) | 337, 430, 933 |
| TaiI | ACGT | 3 cut(s) | 174, 722, 743 |
| TaqI | TCGA | 3 cut(s) | 71, 648, 1040 |
| TasI | AATT | 4 cut(s) | 237, 286, 368, 1036 |
| TatI | WGTACW | 1 cut(s) | 332 |
| TfiI | GAWTC | 2 cut(s) | 249, 268 |
| Tru1I | TTAA | 2 cut(s) | 242, 1060 |
| Tru9I | TTAA | 2 cut(s) | 242, 1060 |
| TscAI | CASTG | 1 cut(s) | 435 |
| TseFI | GTSAC | 2 cut(s) | 151, 430 |
| Tsp45I | GTSAC | 2 cut(s) | 151, 430 |
| TspDTI | ATGAA | 2 cut(s) | 200, 664 |
| TspGWI | ACGGA | 1 cut(s) | 55 |
| TspRI | CASTG | 1 cut(s) | 435 |
| VpaK11BI | GGWCC | 3 cut(s) | 602, 760, 1048 |
| XapI | RAATTY | 3 cut(s) | 237, 368, 1036 |
| XbaI | TCTAGA | 1 cut(s) | 610 |
| XceI | RCATGY | 2 cut(s) | 783, 1058 |
| XmnI | GAANNNNTTC | 2 cut(s) | 368, 530 |
| XspI | CTAG | 5 cut(s) | 216, 317, 611, 915, 998 |
| ZraI | GACGTC | 1 cut(s) | 741 |