Rorug05G0561800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000322
Physical Location & Seq
Forward (+)
75304092 .. 75307246
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0561800.1

Sequence Viewer

Length: 390 bp
ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAGGTGCTGTTGGGCCACTTGCCTTGGTGGCAATAATCGTCGGATTCATGTCGTTCTGCAAGGCACAATGTAATAAGCATTTCCCCAACAAGAATTCAAAGACTGGTTCTTCGGATCCATCTGCAATAGTTGAGTTGACTAGAGGTGGACCTAGTTCAACAAGGCATTTCACAATGGAGGAGTTAGAACAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTAGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTGCTCCGTGATGGGATGGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACAAGAATTTGTCTCAGAGGTAATGTACTTGTCGCAGATTCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

129

Amino Acids

13.89

Weight (kDa)

9.26

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 324
AclWI GGATC 2 cut(s) 140, 153
AcsI RAATTY 2 cut(s) 124, 347
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 1 cut(s) 368
AgsI TTSAA 2 cut(s) 129, 189
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 2 cut(s) 140, 153
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 2 cut(s) 124, 347
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 44, 179
AsuC2I CCSGG 1 cut(s) 330
AvaII GGWCC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 32
BccI CCATC 3 cut(s) 157, 293, 298
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 4 cut(s) 171, 183, 254, 339
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 44, 179
BmiI GGNNCC 2 cut(s) 147, 326
BmrFI CCNGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 54, 328
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 54, 328
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 358
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 368
BspLI GGNNCC 2 cut(s) 147, 326
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 2 cut(s) 140, 153
BspT107I GGYRCC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 54, 328
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 385
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 44, 179
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 23, 46, 224, 314
CviKI_1 RGCY 4 cut(s) 23, 46, 224, 314
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 355
DinI GGCGCC 1 cut(s) 326
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 82
FaiI YATR 4 cut(s) 26, 80, 261, 282
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 4 cut(s) 171, 183, 254, 339
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 330
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 75, 379
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 2 cut(s) 168, 179
Hpy188I TCNGA 3 cut(s) 74, 145, 358
Hpy8I GTNNAC 2 cut(s) 168, 179
Hpy99I CGWCG 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 20, 90, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 355
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 297, 340
LpnPI CCDG 2 cut(s) 120, 343
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 4 cut(s) 171, 183, 254, 339
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 6, 132, 242
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 2 cut(s) 124, 347
Mly113I GGCGCC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 10, 52
MnlI CCTC 4 cut(s) 26, 167, 202, 352
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 325
NciI CCSGG 1 cut(s) 330
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 147, 326
PfeI GAWTC 2 cut(s) 75, 379
PkrI GCNGC 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 328
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 147, 326
PspPI GGNCC 2 cut(s) 44, 179
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 44, 179
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 37, 178, 184, 226, 289, 363
SfcI CTRYAG 1 cut(s) 18
SfoI GGCGCC 1 cut(s) 326
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 2 cut(s) 124, 347
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 4 cut(s) 171, 183, 254, 339
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 54
TasI AATT 2 cut(s) 124, 347
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 75, 379
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 67, 255, 371
TspGWI ACGGA 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 2 cut(s) 124, 347
XspI CTAG 4 cut(s) 171, 183, 254, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.