Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 361 |
| AciI | CCGC | 1 cut(s) | 178 |
| AclWI | GGATC | 2 cut(s) | 35, 48 |
| AfaI | GTAC | 1 cut(s) | 466 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| AlwI | GGATC | 2 cut(s) | 35, 48 |
| BaeGI | GKGCMC | 1 cut(s) | 325 |
| BamHI | GGATCC | 1 cut(s) | 40 |
| BauI | CACGAG | 1 cut(s) | 324 |
| BccI | CCATC | 3 cut(s) | 222, 236, 477 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 2 cut(s) | 60, 368 |
| BmiI | GGNNCC | 2 cut(s) | 42, 57 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 2 cut(s) | 45, 213 |
| BsaI | GGTCTC | 1 cut(s) | 185 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| Bse8I | GATNNNNATC | 2 cut(s) | 45, 213 |
| BseGI | GGATG | 2 cut(s) | 217, 247 |
| BseJI | GATNNNNATC | 2 cut(s) | 45, 213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BseSI | GKGCMC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| Bso31I | GGTCTC | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 325 |
| Bsp143I | GATC | 4 cut(s) | 40, 46, 208, 451 |
| BspACI | CCGC | 1 cut(s) | 178 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspLI | GGNNCC | 2 cut(s) | 42, 57 |
| BspPI | GGATC | 2 cut(s) | 35, 48 |
| BspTNI | GGTCTC | 1 cut(s) | 185 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssMI | GATC | 4 cut(s) | 40, 46, 208, 451 |
| BssSI | CACGAG | 1 cut(s) | 324 |
| Bst2BI | CACGAG | 1 cut(s) | 324 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 505 |
| BstC8I | GCNNGC | 1 cut(s) | 501 |
| BstDEI | CTNAG | 3 cut(s) | 147, 165, 267 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 2 cut(s) | 217, 247 |
| BstKTI | GATC | 4 cut(s) | 43, 49, 211, 454 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 4 cut(s) | 40, 46, 208, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 437, 505 |
| BstNSI | RCATGY | 1 cut(s) | 503 |
| BstSLI | GKGCMC | 1 cut(s) | 325 |
| BstX2I | RGATCY | 1 cut(s) | 40 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 51, 351, 476 |
| BstYI | RGATCY | 1 cut(s) | 40 |
| BtgZI | GCGATG | 1 cut(s) | 420 |
| BtsCI | GGATG | 2 cut(s) | 217, 247 |
| Cac8I | GCNNGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 1 cut(s) | 465 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 286, 321 |
| CviAII | CATG | 1 cut(s) | 500 |
| CviJI | RGCY | 3 cut(s) | 157, 254, 329 |
| CviKI_1 | RGCY | 3 cut(s) | 157, 254, 329 |
| CviQI | GTAC | 1 cut(s) | 465 |
| DdeI | CTNAG | 3 cut(s) | 147, 165, 267 |
| DpnI | GATC | 4 cut(s) | 42, 48, 210, 453 |
| DpnII | GATC | 4 cut(s) | 40, 46, 208, 451 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| Eco31I | GGTCTC | 1 cut(s) | 185 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| FaeI | CATG | 1 cut(s) | 503 |
| FatI | CATG | 1 cut(s) | 499 |
| FauI | CCCGC | 1 cut(s) | 171 |
| FauNDI | CATATG | 2 cut(s) | 235, 313 |
| FblI | GTMKAC | 1 cut(s) | 361 |
| FokI | GGATG | 2 cut(s) | 204, 254 |
| FspBI | CTAG | 2 cut(s) | 60, 368 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| Hin1II | CATG | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 2 cut(s) | 87, 362 |
| Hpy188I | TCNGA | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 368 |
| Hpy8I | GTNNAC | 2 cut(s) | 87, 362 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 4 cut(s) | 233, 286, 482, 508 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 437, 505 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 165, 267 |
| Hsp92II | CATG | 1 cut(s) | 503 |
| Kzo9I | GATC | 4 cut(s) | 40, 46, 208, 451 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| LpnPI | CCDG | 6 cut(s) | 57, 138, 171, 351, 357, 443 |
| MaeI | CTAG | 2 cut(s) | 60, 368 |
| MaeIII | GTNAC | 1 cut(s) | 511 |
| MalI | GATC | 4 cut(s) | 42, 48, 210, 453 |
| MboI | GATC | 4 cut(s) | 40, 46, 208, 451 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MflI | RGATCY | 1 cut(s) | 40 |
| MhlI | GDGCHC | 1 cut(s) | 325 |
| MluCI | AATT | 4 cut(s) | 23, 96, 102, 173 |
| MnlI | CCTC | 8 cut(s) | 8, 107, 131, 162, 196, 375, 403, 415 |
| MseI | TTAA | 1 cut(s) | 273 |
| MslI | CAYNNNNRTG | 1 cut(s) | 474 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 437, 505 |
| NdeI | CATATG | 2 cut(s) | 235, 313 |
| NdeII | GATC | 4 cut(s) | 40, 46, 208, 451 |
| NlaIII | CATG | 1 cut(s) | 503 |
| NlaIV | GGNNCC | 2 cut(s) | 42, 57 |
| NmuCI | GTSAC | 1 cut(s) | 511 |
| NspI | RCATGY | 1 cut(s) | 503 |
| PaeI | GCATGC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 2 cut(s) | 42, 57 |
| PsuI | RGATCY | 1 cut(s) | 40 |
| RsaI | GTAC | 1 cut(s) | 466 |
| RsaNI | GTAC | 1 cut(s) | 465 |
| RseI | CAYNNNNRTG | 1 cut(s) | 474 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| Sau3AI | GATC | 4 cut(s) | 40, 46, 208, 451 |
| SduI | GDGCHC | 1 cut(s) | 325 |
| SetI | ASST | 5 cut(s) | 118, 207, 351, 367, 426 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 474 |
| SphI | GCATGC | 1 cut(s) | 503 |
| Sse9I | AATT | 4 cut(s) | 23, 96, 102, 173 |
| SsiI | CCGC | 1 cut(s) | 178 |
| SspMI | CTAG | 2 cut(s) | 60, 368 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TasI | AATT | 4 cut(s) | 23, 96, 102, 173 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TseFI | GTSAC | 1 cut(s) | 511 |
| Tsp45I | GTSAC | 1 cut(s) | 511 |
| TspDTI | ATGAA | 1 cut(s) | 330 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XbaI | TCTAGA | 1 cut(s) | 367 |
| XceI | RCATGY | 1 cut(s) | 503 |
| XmiI | GTMKAC | 1 cut(s) | 361 |
| XspI | CTAG | 2 cut(s) | 60, 368 |