Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 8 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 235 |
| AciI | CCGC | 2 cut(s) | 161, 518 |
| AclWI | GGATC | 1 cut(s) | 268 |
| AcoI | YGGCCR | 1 cut(s) | 237 |
| AcsI | RAATTY | 1 cut(s) | 316 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 433 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 23, 235 |
| AgsI | TTSAA | 3 cut(s) | 67, 83, 316 |
| AluBI | AGCT | 4 cut(s) | 30, 36, 53, 389 |
| AluI | AGCT | 4 cut(s) | 30, 36, 53, 389 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| AlwI | GGATC | 1 cut(s) | 268 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 296 |
| AoxI | GGCC | 1 cut(s) | 237 |
| ApoI | RAATTY | 1 cut(s) | 316 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 136 |
| AspS9I | GGNCC | 1 cut(s) | 108 |
| AsuC2I | CCSGG | 1 cut(s) | 24 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 108 |
| BanII | GRGCYC | 2 cut(s) | 32, 228 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BccI | CCATC | 5 cut(s) | 52, 331, 495, 508, 541 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BclI | TGATCA | 2 cut(s) | 562, 613 |
| BcnI | CCSGG | 1 cut(s) | 24 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BfmI | CTRYAG | 1 cut(s) | 330 |
| BisI | GCNGC | 1 cut(s) | 519 |
| BlsI | GCNGC | 1 cut(s) | 520 |
| Bme1390I | CCNGG | 1 cut(s) | 24 |
| Bme18I | GGWCC | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 1 cut(s) | 108 |
| BmiI | GGNNCC | 1 cut(s) | 227 |
| BmrFI | CCNGG | 1 cut(s) | 24 |
| BpmI | CTGGAG | 1 cut(s) | 62 |
| BpuMI | CCSGG | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 1 cut(s) | 23 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 84, 114, 680, 710 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 23, 235 |
| BseDI | CCNNGG | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 23, 235 |
| BseMII | CTCAG | 1 cut(s) | 702 |
| BshFI | GGCC | 1 cut(s) | 239 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 23, 235 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 239 |
| Bso31I | GGTCTC | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 2 cut(s) | 32, 228 |
| Bsp143I | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| BspACI | CCGC | 2 cut(s) | 161, 518 |
| BspANI | GGCC | 1 cut(s) | 239 |
| BspCNI | CTCAG | 1 cut(s) | 703 |
| BspHI | TCATGA | 1 cut(s) | 565 |
| BspLI | GGNNCC | 1 cut(s) | 227 |
| BspPI | GGATC | 1 cut(s) | 268 |
| BspTNI | GGTCTC | 1 cut(s) | 38 |
| BssECI | CCNNGG | 1 cut(s) | 23 |
| BssMI | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst4CI | ACNGT | 3 cut(s) | 122, 268, 631 |
| Bst6I | CTCTTC | 2 cut(s) | 91, 662 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 2 cut(s) | 38, 163 |
| BstDEI | CTNAG | 3 cut(s) | 54, 488, 711 |
| BstKTI | GATC | 6 cut(s) | 276, 494, 565, 616, 665, 693 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| BstSCI | CCNGG | 1 cut(s) | 22 |
| BstSFI | CTRYAG | 1 cut(s) | 330 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 452 |
| BsuRI | GGCC | 1 cut(s) | 239 |
| BtsI | GCAGTG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 3 cut(s) | 118, 525, 706 |
| Cac8I | GCNNGC | 2 cut(s) | 38, 163 |
| CaiI | CAGNNNCTG | 1 cut(s) | 296 |
| CciI | TCATGA | 1 cut(s) | 565 |
| Cfr13I | GGNCC | 1 cut(s) | 108 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 103, 138 |
| CviAII | CATG | 4 cut(s) | 166, 566, 650, 694 |
| CviJI | RGCY | 7 cut(s) | 30, 36, 40, 53, 226, 239, 389 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 36, 40, 53, 226, 239, 389 |
| DdeI | CTNAG | 3 cut(s) | 54, 488, 711 |
| DpnI | GATC | 6 cut(s) | 275, 493, 564, 615, 664, 692 |
| DpnII | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| DraIII | CACNNNGTG | 1 cut(s) | 433 |
| EaeI | YGGCCR | 1 cut(s) | 237 |
| Eam1104I | CTCTTC | 2 cut(s) | 91, 662 |
| EarI | CTCTTC | 2 cut(s) | 91, 662 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 228 |
| Eco31I | GGTCTC | 1 cut(s) | 38 |
| Eco47I | GGWCC | 1 cut(s) | 108 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 1 cut(s) | 108 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 228 |
| FaeI | CATG | 4 cut(s) | 169, 569, 653, 697 |
| FatI | CATG | 4 cut(s) | 165, 565, 649, 693 |
| FauI | CCCGC | 1 cut(s) | 154 |
| FbaI | TGATCA | 2 cut(s) | 562, 613 |
| Fnu4HI | GCNGC | 1 cut(s) | 519 |
| FriOI | GRGCYC | 2 cut(s) | 32, 228 |
| Fsp4HI | GCNGC | 1 cut(s) | 519 |
| FspBI | CTAG | 1 cut(s) | 33 |
| GluI | GCNGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 1 cut(s) | 62 |
| HaeIII | GGCC | 1 cut(s) | 239 |
| HapII | CCGG | 1 cut(s) | 23 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 169, 569, 653, 697 |
| HinfI | GANTC | 4 cut(s) | 13, 169, 293, 335 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy166II | GTNNAC | 1 cut(s) | 301 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 271, 407, 495, 566 |
| Hpy8I | GTNNAC | 1 cut(s) | 301 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 3 cut(s) | 122, 268, 631 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 306 |
| HpyCH4V | TGCA | 2 cut(s) | 212, 699 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 488, 711 |
| HpySE526I | ACGT | 2 cut(s) | 5, 306 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 169, 569, 653, 697 |
| Ksp22I | TGATCA | 2 cut(s) | 562, 613 |
| Kzo9I | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| LmnI | GCTCC | 2 cut(s) | 27, 231 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeII | ACGT | 2 cut(s) | 5, 306 |
| MaeIII | GTNAC | 1 cut(s) | 701 |
| MalI | GATC | 6 cut(s) | 275, 493, 564, 615, 664, 692 |
| MboI | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| MboII | GAAGA | 5 cut(s) | 95, 108, 510, 581, 679 |
| MhlI | GDGCHC | 2 cut(s) | 32, 228 |
| MluCI | AATT | 4 cut(s) | 78, 132, 316, 657 |
| MlyI | GAGTC | 2 cut(s) | 22, 163 |
| MnlI | CCTC | 5 cut(s) | 86, 121, 135, 630, 663 |
| MroXI | GAANNNNTTC | 1 cut(s) | 136 |
| MseI | TTAA | 1 cut(s) | 636 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspI | CCGG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 24 |
| NciI | CCSGG | 1 cut(s) | 24 |
| NdeII | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| NlaIII | CATG | 4 cut(s) | 169, 569, 653, 697 |
| NlaIV | GGNNCC | 1 cut(s) | 227 |
| NmuCI | GTSAC | 1 cut(s) | 701 |
| PagI | TCATGA | 1 cut(s) | 565 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PdmI | GAANNNNTTC | 1 cut(s) | 136 |
| PfeI | GAWTC | 2 cut(s) | 293, 335 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 235 |
| PkrI | GCNGC | 1 cut(s) | 520 |
| PleI | GAGTC | 2 cut(s) | 21, 163 |
| PpsI | GAGTC | 2 cut(s) | 21, 163 |
| PpuMI | RGGWCCY | 1 cut(s) | 108 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| Psp5II | RGGWCCY | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 1 cut(s) | 227 |
| PspPI | GGNCC | 1 cut(s) | 108 |
| PspPPI | RGGWCCY | 1 cut(s) | 108 |
| PstNI | CAGNNNCTG | 1 cut(s) | 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| SaqAI | TTAA | 1 cut(s) | 636 |
| SatI | GCNGC | 1 cut(s) | 519 |
| Sau3AI | GATC | 6 cut(s) | 273, 491, 562, 613, 662, 690 |
| Sau96I | GGNCC | 1 cut(s) | 108 |
| SchI | GAGTC | 2 cut(s) | 22, 163 |
| ScrFI | CCNGG | 1 cut(s) | 24 |
| SduI | GDGCHC | 2 cut(s) | 32, 228 |
| SfcI | CTRYAG | 1 cut(s) | 330 |
| SinI | GGWCC | 1 cut(s) | 108 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| Sse9I | AATT | 4 cut(s) | 78, 132, 316, 657 |
| SsiI | CCGC | 2 cut(s) | 161, 518 |
| SspMI | CTAG | 1 cut(s) | 33 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| StyD4I | CCNGG | 1 cut(s) | 22 |
| TaaI | ACNGT | 3 cut(s) | 122, 268, 631 |
| TaiI | ACGT | 2 cut(s) | 8, 309 |
| TaqI | TCGA | 2 cut(s) | 140, 665 |
| TasI | AATT | 4 cut(s) | 78, 132, 316, 657 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 2 cut(s) | 293, 335 |
| Tru1I | TTAA | 1 cut(s) | 636 |
| Tru9I | TTAA | 1 cut(s) | 636 |
| TscAI | CASTG | 3 cut(s) | 125, 532, 706 |
| TseFI | GTSAC | 1 cut(s) | 701 |
| Tsp45I | GTSAC | 1 cut(s) | 701 |
| TspDTI | ATGAA | 3 cut(s) | 380, 582, 656 |
| TspGWI | ACGGA | 1 cut(s) | 6 |
| TspRI | CASTG | 3 cut(s) | 125, 532, 706 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 235 |
| VpaK11BI | GGWCC | 1 cut(s) | 108 |
| XapI | RAATTY | 1 cut(s) | 316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 55 |
| XmnI | GAANNNNTTC | 1 cut(s) | 136 |
| XspI | CTAG | 1 cut(s) | 33 |
| ZraI | GACGTC | 1 cut(s) | 6 |