Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

21932002 .. 21932745

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGTGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCAGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

6.32

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	2 cut(s)	133, 367
AccIII	TCCGGA	1 cut(s)	705
AciI	CCGC	3 cut(s)	82, 633, 712
AclWI	GGATC	4 cut(s)	161, 336, 355, 436
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	193, 465, 560
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	549
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	6 cut(s)	103, 166, 377, 473, 667, 692
AluI	AGCT	6 cut(s)	103, 166, 377, 473, 667, 692
Alw21I	GWGCWC	1 cut(s)	669
AlwI	GGATC	4 cut(s)	161, 336, 355, 436
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	308, 539, 599
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	273
BanII	GRGCYC	2 cut(s)	229, 669
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 400
BceAI	ACGGC	2 cut(s)	38, 193
BciT130I	CCWGG	1 cut(s)	551
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	453, 486
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	2 cut(s)	133, 367
BisI	GCNGC	2 cut(s)	51, 712
BlpI	GCTNAGC	1 cut(s)	668
BlsI	GCNGC	2 cut(s)	52, 713
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	3 cut(s)	6, 128, 710
BmrFI	CCNGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	2 cut(s)	146, 495
Bpu1102I	GCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	80, 683
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
BseAI	TCCGGA	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 265
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	483, 682
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	229, 273, 669
Bsp13I	TCCGGA	1 cut(s)	705
Bsp143I	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
Bsp1720I	GCTNAGC	1 cut(s)	668
BspACI	CCGC	3 cut(s)	82, 633, 712
BspCNI	CTCAG	2 cut(s)	482, 681
BspEI	TCCGGA	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	6, 128, 710
BspMI	ACCTGC	2 cut(s)	133, 367
BspPI	GGATC	4 cut(s)	161, 336, 355, 436
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	136, 573, 641
Bst6I	CTCTTC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	469, 668
BstF5I	GGATG	2 cut(s)	37, 265
BstKTI	GATC	7 cut(s)	156, 186, 284, 331, 350, 431, 547
BstMBI	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 374, 678
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	3 cut(s)	153, 347, 428
BstYI	RGATCY	3 cut(s)	153, 347, 428
BtsCI	GGATG	2 cut(s)	37, 265
BtsIMutI	CAGTG	1 cut(s)	569
BveI	ACCTGC	2 cut(s)	133, 367
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	9 cut(s)	70, 266, 274, 323, 439, 505, 526, 584, 607
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	469, 668
DpnI	GATC	7 cut(s)	155, 185, 283, 330, 349, 430, 546
DpnII	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	667
Eco24I	GRGCYC	2 cut(s)	229, 669
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	229, 669
FaeI	CATG	9 cut(s)	73, 269, 277, 326, 442, 508, 529, 587, 610
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	9 cut(s)	69, 265, 273, 322, 438, 504, 525, 583, 606
Fnu4HI	GCNGC	2 cut(s)	51, 712
FokI	GGATG	2 cut(s)	44, 272
FriOI	GRGCYC	2 cut(s)	229, 669
Fsp4HI	GCNGC	2 cut(s)	51, 712
FspBI	CTAG	2 cut(s)	453, 486
GluI	GCNGC	2 cut(s)	51, 712
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	146, 495
HapII	CCGG	1 cut(s)	706
Hin1II	CATG	9 cut(s)	73, 269, 277, 326, 442, 508, 529, 587, 610
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	90
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	3 cut(s)	308, 539, 599
Hpy166II	GTNNAC	3 cut(s)	217, 252, 397
Hpy188I	TCNGA	2 cut(s)	259, 622
Hpy188III	TCNNGA	4 cut(s)	193, 214, 230, 706
Hpy8I	GTNNAC	3 cut(s)	217, 252, 397
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	3 cut(s)	136, 573, 641
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	277, 356, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 374, 678
HpyF3I	CTNAG	2 cut(s)	469, 668
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	9 cut(s)	73, 269, 277, 326, 442, 508, 529, 587, 610
Kpn2I	TCCGGA	1 cut(s)	705
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
LmnI	GCTCC	3 cut(s)	84, 100, 708
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	453, 486
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	307, 635
MalI	GATC	7 cut(s)	155, 185, 283, 330, 349, 430, 546
MboI	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
MboII	GAAGA	7 cut(s)	253, 256, 342, 363, 457, 554, 622
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	3 cut(s)	153, 347, 428
MhlI	GDGCHC	3 cut(s)	229, 273, 669
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	9 cut(s)	22, 29, 104, 144, 319, 470, 530, 583, 676
MroI	TCCGGA	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	2 cut(s)	339, 396
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	4 cut(s)	166, 377, 473, 714
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	79, 374, 678
NdeII	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
NlaIII	CATG	9 cut(s)	73, 269, 277, 326, 442, 508, 529, 587, 610
NlaIV	GGNNCC	3 cut(s)	6, 128, 710
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	52, 713
PpuMI	RGGWCCY	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	6, 128, 710
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PsrI	GAACNNNNNNTAC	2 cut(s)	475, 507
PsuI	RGATCY	3 cut(s)	153, 347, 428
PvuII	CAGCTG	3 cut(s)	166, 377, 473
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	339, 396
SatI	GCNGC	2 cut(s)	51, 712
Sau3AI	GATC	7 cut(s)	153, 183, 281, 328, 347, 428, 544
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	229, 273, 669
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	2 cut(s)	95, 662
SmoI	CTYRAG	2 cut(s)	95, 662
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	82, 633, 712
SspMI	CTAG	2 cut(s)	453, 486
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	136, 573, 641
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	339, 396
Tru9I	TTAA	2 cut(s)	339, 396
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	6 cut(s)	254, 449, 514, 521, 623, 639
TspRI	CASTG	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	126
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	2 cut(s)	453, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.