Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 640 |
| AccB1I | GGYRCC | 1 cut(s) | 640 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 53 |
| AciI | CCGC | 4 cut(s) | 122, 126, 170, 425 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcsI | RAATTY | 5 cut(s) | 176, 278, 507, 776, 788 |
| AcuI | CTGAAG | 1 cut(s) | 981 |
| AfaI | GTAC | 2 cut(s) | 573, 642 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 53, 458, 532, 533, 848 |
| AgsI | TTSAA | 4 cut(s) | 22, 481, 793, 1012 |
| AhlI | ACTAGT | 1 cut(s) | 563 |
| AjnI | CCWGG | 2 cut(s) | 405, 823 |
| AluBI | AGCT | 3 cut(s) | 413, 880, 1008 |
| AluI | AGCT | 3 cut(s) | 413, 880, 1008 |
| Alw26I | GTCTC | 1 cut(s) | 546 |
| AlwI | GGATC | 1 cut(s) | 198 |
| Ama87I | CYCGRG | 1 cut(s) | 213 |
| AoxI | GGCC | 2 cut(s) | 677, 908 |
| ApeKI | GCWGC | 3 cut(s) | 43, 371, 383 |
| ApoI | RAATTY | 5 cut(s) | 176, 278, 507, 776, 788 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| Asp718I | GGTACC | 1 cut(s) | 640 |
| AspLEI | GCGC | 1 cut(s) | 397 |
| AspS9I | GGNCC | 4 cut(s) | 8, 88, 403, 678 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaI | CYCGRG | 1 cut(s) | 213 |
| AvaII | GGWCC | 3 cut(s) | 8, 88, 403 |
| BanI | GGYRCC | 1 cut(s) | 640 |
| BbvI | GCAGC | 3 cut(s) | 55, 383, 395 |
| BccI | CCATC | 5 cut(s) | 47, 76, 479, 694, 808 |
| BciT130I | CCWGG | 2 cut(s) | 407, 825 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BcoDI | GTCTC | 1 cut(s) | 546 |
| BcuI | ACTAGT | 1 cut(s) | 563 |
| BfaI | CTAG | 4 cut(s) | 564, 725, 885, 1005 |
| BfmI | CTRYAG | 1 cut(s) | 843 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BisI | GCNGC | 5 cut(s) | 44, 122, 372, 384, 426 |
| BlsI | GCNGC | 5 cut(s) | 45, 123, 373, 385, 427 |
| Bme1390I | CCNGG | 2 cut(s) | 407, 825 |
| Bme18I | GGWCC | 3 cut(s) | 8, 88, 403 |
| BmeT110I | CYCGRG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 4 cut(s) | 8, 88, 403, 678 |
| BmiI | GGNNCC | 2 cut(s) | 642, 954 |
| BmrFI | CCNGG | 2 cut(s) | 407, 825 |
| BmsI | GCATC | 3 cut(s) | 117, 196, 846 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BpuEI | CTTGAG | 1 cut(s) | 896 |
| BsaBI | GATNNNNATC | 1 cut(s) | 654 |
| BsaI | GGTCTC | 1 cut(s) | 546 |
| BsaJI | CCNNGG | 2 cut(s) | 11, 502 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 53, 458, 532, 533, 848 |
| Bse118I | RCCGGY | 1 cut(s) | 397 |
| Bse1I | ACTGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 1 cut(s) | 165 |
| Bse8I | GATNNNNATC | 1 cut(s) | 654 |
| BseBI | CCWGG | 2 cut(s) | 407, 825 |
| BseDI | CCNNGG | 2 cut(s) | 11, 502 |
| BseGI | GGATG | 1 cut(s) | 490 |
| BseJI | GATNNNNATC | 1 cut(s) | 654 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 53, 458, 532, 533, 848 |
| BseMI | GCAATG | 1 cut(s) | 165 |
| BseMII | CTCAG | 1 cut(s) | 962 |
| BseNI | ACTGG | 1 cut(s) | 426 |
| BseXI | GCAGC | 3 cut(s) | 55, 383, 395 |
| BseYI | CCCAGC | 1 cut(s) | 557 |
| BsgI | GTGCAG | 1 cut(s) | 248 |
| BshFI | GGCC | 2 cut(s) | 679, 910 |
| BshNI | GGYRCC | 1 cut(s) | 640 |
| BsiHKCI | CYCGRG | 1 cut(s) | 213 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 574 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 53, 458, 532, 533, 848 |
| BsmAI | GTCTC | 1 cut(s) | 546 |
| BsmFI | GGGAC | 1 cut(s) | 574 |
| BsnI | GGCC | 2 cut(s) | 679, 910 |
| Bso31I | GGTCTC | 1 cut(s) | 546 |
| BsoBI | CYCGRG | 1 cut(s) | 213 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp143I | GATC | 2 cut(s) | 190, 655 |
| Bsp19I | CCATGG | 1 cut(s) | 502 |
| BspACI | CCGC | 4 cut(s) | 122, 126, 170, 425 |
| BspANI | GGCC | 2 cut(s) | 679, 910 |
| BspCNI | CTCAG | 1 cut(s) | 963 |
| BspLI | GGNNCC | 2 cut(s) | 642, 954 |
| BspMAI | CTGCAG | 1 cut(s) | 847 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BspT107I | GGYRCC | 1 cut(s) | 640 |
| BspTNI | GGTCTC | 1 cut(s) | 546 |
| BsrDI | GCAATG | 1 cut(s) | 165 |
| BsrFI | RCCGGY | 1 cut(s) | 397 |
| BsrI | ACTGG | 1 cut(s) | 426 |
| BssAI | RCCGGY | 1 cut(s) | 397 |
| BssECI | CCNNGG | 2 cut(s) | 11, 502 |
| BssMI | GATC | 2 cut(s) | 190, 655 |
| BssT1I | CCWWGG | 1 cut(s) | 502 |
| Bst2UI | CCWGG | 2 cut(s) | 407, 825 |
| Bst6I | CTCTTC | 1 cut(s) | 893 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 345, 392 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 843, 992 |
| BstDEI | CTNAG | 3 cut(s) | 457, 666, 971 |
| BstDSI | CCRYGG | 2 cut(s) | 11, 502 |
| BstF5I | GGATG | 1 cut(s) | 490 |
| BstHHI | GCGC | 1 cut(s) | 397 |
| BstKTI | GATC | 2 cut(s) | 193, 658 |
| BstMAI | GTCTC | 1 cut(s) | 546 |
| BstMBI | GATC | 2 cut(s) | 190, 655 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 158, 167, 215, 345, 380, 392, 1014 |
| BstNI | CCWGG | 2 cut(s) | 407, 825 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstSCI | CCNGG | 2 cut(s) | 405, 823 |
| BstSFI | CTRYAG | 1 cut(s) | 843 |
| BstV1I | GCAGC | 3 cut(s) | 55, 383, 395 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BsuRI | GGCC | 2 cut(s) | 679, 910 |
| BtgI | CCRYGG | 2 cut(s) | 11, 502 |
| BtsCI | GGATG | 1 cut(s) | 490 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 419 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 843, 992 |
| CfoI | GCGC | 1 cut(s) | 397 |
| Cfr10I | RCCGGY | 1 cut(s) | 397 |
| Cfr13I | GGNCC | 4 cut(s) | 8, 88, 403, 678 |
| Csp6I | GTAC | 2 cut(s) | 572, 641 |
| CviAII | CATG | 4 cut(s) | 40, 118, 239, 503 |
| CviQI | GTAC | 2 cut(s) | 572, 641 |
| DdeI | CTNAG | 3 cut(s) | 457, 666, 971 |
| DpnI | GATC | 2 cut(s) | 192, 657 |
| DpnII | GATC | 2 cut(s) | 190, 655 |
| Eam1104I | CTCTTC | 1 cut(s) | 893 |
| EarI | CTCTTC | 1 cut(s) | 893 |
| Eco130I | CCWWGG | 1 cut(s) | 502 |
| Eco31I | GGTCTC | 1 cut(s) | 546 |
| Eco47I | GGWCC | 3 cut(s) | 8, 88, 403 |
| Eco57I | CTGAAG | 1 cut(s) | 981 |
| Eco88I | CYCGRG | 1 cut(s) | 213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 88 |
| EcoRI | GAATTC | 1 cut(s) | 776 |
| EcoRII | CCWGG | 2 cut(s) | 405, 823 |
| EcoT14I | CCWWGG | 1 cut(s) | 502 |
| ErhI | CCWWGG | 1 cut(s) | 502 |
| FaeI | CATG | 4 cut(s) | 43, 121, 242, 506 |
| FaqI | GGGAC | 1 cut(s) | 574 |
| FatI | CATG | 4 cut(s) | 39, 117, 238, 502 |
| FauI | CCCGC | 2 cut(s) | 133, 163 |
| FauNDI | CATATG | 2 cut(s) | 49, 130 |
| Fnu4HI | GCNGC | 5 cut(s) | 44, 122, 372, 384, 426 |
| FokI | GGATG | 1 cut(s) | 497 |
| Fsp4HI | GCNGC | 5 cut(s) | 44, 122, 372, 384, 426 |
| FspBI | CTAG | 4 cut(s) | 564, 725, 885, 1005 |
| GlaI | GCGC | 1 cut(s) | 396 |
| GluI | GCNGC | 5 cut(s) | 44, 122, 372, 384, 426 |
| GsaI | CCCAGC | 1 cut(s) | 561 |
| HaeIII | GGCC | 2 cut(s) | 679, 910 |
| HapII | CCGG | 1 cut(s) | 398 |
| HhaI | GCGC | 1 cut(s) | 397 |
| Hin1II | CATG | 4 cut(s) | 43, 121, 242, 506 |
| Hin6I | GCGC | 1 cut(s) | 395 |
| HinP1I | GCGC | 1 cut(s) | 395 |
| HinfI | GANTC | 1 cut(s) | 322 |
| HpaII | CCGG | 1 cut(s) | 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 307 |
| Hpy188I | TCNGA | 1 cut(s) | 718 |
| Hpy188III | TCNNGA | 3 cut(s) | 188, 467, 970 |
| Hpy8I | GTNNAC | 1 cut(s) | 307 |
| HpyAV | CCTTC | 4 cut(s) | 265, 463, 531, 754 |
| HpyCH4V | TGCA | 9 cut(s) | 43, 70, 209, 242, 265, 339, 703, 797, 845 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 158, 167, 215, 345, 380, 392, 1014 |
| HpyF3I | CTNAG | 3 cut(s) | 457, 666, 971 |
| Hsp92II | CATG | 4 cut(s) | 43, 121, 242, 506 |
| HspAI | GCGC | 1 cut(s) | 395 |
| KpnI | GGTACC | 1 cut(s) | 644 |
| Kzo9I | GATC | 2 cut(s) | 190, 655 |
| LmnI | GCTCC | 3 cut(s) | 418, 754, 917 |
| Lsp1109I | GCAGC | 3 cut(s) | 55, 383, 395 |
| LweI | GCATC | 3 cut(s) | 117, 196, 846 |
| MaeI | CTAG | 4 cut(s) | 564, 725, 885, 1005 |
| MalI | GATC | 2 cut(s) | 192, 657 |
| MboI | GATC | 2 cut(s) | 190, 655 |
| MboII | GAAGA | 6 cut(s) | 173, 250, 581, 907, 910, 974 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MseI | TTAA | 1 cut(s) | 437 |
| MslI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 2 cut(s) | 407, 825 |
| MvaI | CCWGG | 2 cut(s) | 407, 825 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 158, 167, 215, 345, 380, 392, 1014 |
| NcoI | CCATGG | 1 cut(s) | 502 |
| NdeI | CATATG | 2 cut(s) | 49, 130 |
| NdeII | GATC | 2 cut(s) | 190, 655 |
| NlaIII | CATG | 4 cut(s) | 43, 121, 242, 506 |
| NlaIV | GGNNCC | 2 cut(s) | 642, 954 |
| NspI | RCATGY | 1 cut(s) | 121 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 53 |
| PfoI | TCCNGGA | 1 cut(s) | 405 |
| PkrI | GCNGC | 5 cut(s) | 45, 123, 373, 385, 427 |
| PpuMI | RGGWCCY | 1 cut(s) | 88 |
| Psp5II | RGGWCCY | 1 cut(s) | 88 |
| Psp6I | CCWGG | 2 cut(s) | 405, 823 |
| PspFI | CCCAGC | 1 cut(s) | 557 |
| PspGI | CCWGG | 2 cut(s) | 405, 823 |
| PspN4I | GGNNCC | 2 cut(s) | 642, 954 |
| PspPI | GGNCC | 4 cut(s) | 8, 88, 403, 678 |
| PspPPI | RGGWCCY | 1 cut(s) | 88 |
| PstI | CTGCAG | 1 cut(s) | 847 |
| RsaI | GTAC | 2 cut(s) | 573, 642 |
| RsaNI | GTAC | 2 cut(s) | 572, 641 |
| RseI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| SaqAI | TTAA | 1 cut(s) | 437 |
| SatI | GCNGC | 5 cut(s) | 44, 122, 372, 384, 426 |
| Sau3AI | GATC | 2 cut(s) | 190, 655 |
| Sau96I | GGNCC | 4 cut(s) | 8, 88, 403, 678 |
| ScrFI | CCNGG | 2 cut(s) | 407, 825 |
| SfaNI | GCATC | 3 cut(s) | 117, 196, 846 |
| SfcI | CTRYAG | 1 cut(s) | 843 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SgrAI | CRCCGGYG | 1 cut(s) | 397 |
| SinI | GGWCC | 3 cut(s) | 8, 88, 403 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| SmlI | CTYRAG | 1 cut(s) | 875 |
| SmoI | CTYRAG | 1 cut(s) | 875 |
| SpeI | ACTAGT | 1 cut(s) | 563 |
| SsiI | CCGC | 4 cut(s) | 122, 126, 170, 425 |
| SspMI | CTAG | 4 cut(s) | 564, 725, 885, 1005 |
| StyD4I | CCNGG | 2 cut(s) | 405, 823 |
| StyI | CCWWGG | 1 cut(s) | 502 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TauI | GCSGC | 2 cut(s) | 124, 428 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| Tru1I | TTAA | 1 cut(s) | 437 |
| Tru9I | TTAA | 1 cut(s) | 437 |
| TscAI | CASTG | 2 cut(s) | 118, 426 |
| TseI | GCWGC | 3 cut(s) | 43, 371, 383 |
| TspDTI | ATGAA | 2 cut(s) | 173, 642 |
| TspRI | CASTG | 2 cut(s) | 118, 426 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 3 cut(s) | 8, 88, 403 |
| XapI | RAATTY | 5 cut(s) | 176, 278, 507, 776, 788 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 4 cut(s) | 564, 725, 885, 1005 |