Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 14 - 61 | 5.9e-15 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 17 - 75 | 3e-10 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 67 - 111 | 2.1e-16 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 71 - 119 | 1.1e-06 | Myb-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 278, 391, 584, 681 |
| AclWI | GGATC | 1 cut(s) | 572 |
| AcoI | YGGCCR | 1 cut(s) | 292 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AfaI | GTAC | 6 cut(s) | 385, 442, 607, 763, 769, 808 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 445, 649 |
| AflII | CTTAAG | 1 cut(s) | 137 |
| AgsI | TTSAA | 4 cut(s) | 175, 350, 518, 541 |
| AhlI | ACTAGT | 1 cut(s) | 764 |
| AjnI | CCWGG | 2 cut(s) | 289, 558 |
| AleI | CACNNNNGTG | 1 cut(s) | 464 |
| AluBI | AGCT | 8 cut(s) | 56, 229, 250, 623, 714, 751, 797, 838 |
| AluI | AGCT | 8 cut(s) | 56, 229, 250, 623, 714, 751, 797, 838 |
| Alw21I | GWGCWC | 2 cut(s) | 231, 461 |
| Alw26I | GTCTC | 1 cut(s) | 494 |
| Alw44I | GTGCAC | 1 cut(s) | 457 |
| AlwI | GGATC | 1 cut(s) | 572 |
| Ama87I | CYCGRG | 1 cut(s) | 213 |
| AoxI | GGCC | 2 cut(s) | 292, 844 |
| ApaLI | GTGCAC | 1 cut(s) | 457 |
| ApeKI | GCWGC | 3 cut(s) | 527, 797, 838 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| AspS9I | GGNCC | 1 cut(s) | 845 |
| AsuHPI | GGTGA | 4 cut(s) | 110, 380, 605, 830 |
| AvaI | CYCGRG | 1 cut(s) | 213 |
| BaeGI | GKGCMC | 1 cut(s) | 461 |
| BanII | GRGCYC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 2 cut(s) | 231, 461 |
| BbvCI | CCTCAGC | 1 cut(s) | 587 |
| BbvI | GCAGC | 3 cut(s) | 514, 784, 825 |
| BccI | CCATC | 5 cut(s) | 162, 258, 589, 697, 779 |
| BciT130I | CCWGG | 2 cut(s) | 291, 560 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 494 |
| BcuI | ACTAGT | 1 cut(s) | 764 |
| BfaI | CTAG | 1 cut(s) | 765 |
| BfmI | CTRYAG | 1 cut(s) | 754 |
| BfrI | CTTAAG | 1 cut(s) | 137 |
| BisI | GCNGC | 3 cut(s) | 528, 798, 839 |
| BlsI | GCNGC | 3 cut(s) | 529, 799, 840 |
| BmcAI | AGTACT | 3 cut(s) | 385, 763, 769 |
| Bme1390I | CCNGG | 2 cut(s) | 291, 560 |
| BmeT110I | CYCGRG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 1 cut(s) | 845 |
| BmiI | GGNNCC | 1 cut(s) | 870 |
| BmrFI | CCNGG | 2 cut(s) | 291, 560 |
| BmsI | GCATC | 1 cut(s) | 458 |
| Bpu10I | CCTNAGC | 1 cut(s) | 587 |
| BsaBI | GATNNNNATC | 1 cut(s) | 828 |
| BsaJI | CCNNGG | 2 cut(s) | 444, 864 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 31, 774, 804 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 445, 649 |
| Bse1I | ACTGG | 5 cut(s) | 326, 607, 669, 810, 899 |
| Bse8I | GATNNNNATC | 1 cut(s) | 828 |
| BseBI | CCWGG | 2 cut(s) | 291, 560 |
| BseDI | CCNNGG | 2 cut(s) | 444, 864 |
| BseGI | GGATG | 5 cut(s) | 223, 359, 499, 597, 860 |
| BseJI | GATNNNNATC | 1 cut(s) | 828 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 445, 649 |
| BseMII | CTCAG | 2 cut(s) | 578, 761 |
| BseNI | ACTGG | 5 cut(s) | 326, 607, 669, 810, 899 |
| BseRI | GAGGAG | 3 cut(s) | 22, 57, 795 |
| BseSI | GKGCMC | 1 cut(s) | 461 |
| BseXI | GCAGC | 3 cut(s) | 514, 784, 825 |
| BseYI | CCCAGC | 1 cut(s) | 414 |
| BshFI | GGCC | 2 cut(s) | 294, 846 |
| BsiHKAI | GWGCWC | 2 cut(s) | 231, 461 |
| BsiHKCI | CYCGRG | 1 cut(s) | 213 |
| BsiSI | CCGG | 1 cut(s) | 238 |
| BslFI | GGGAC | 1 cut(s) | 613 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 445, 649 |
| BsmAI | GTCTC | 1 cut(s) | 494 |
| BsmFI | GGGAC | 1 cut(s) | 613 |
| BsnI | GGCC | 2 cut(s) | 294, 846 |
| BsoBI | CYCGRG | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 231, 461 |
| Bsp143I | GATC | 3 cut(s) | 352, 577, 610 |
| Bsp19I | CCATGG | 1 cut(s) | 864 |
| BspACI | CCGC | 4 cut(s) | 278, 391, 584, 681 |
| BspANI | GGCC | 2 cut(s) | 294, 846 |
| BspCNI | CTCAG | 2 cut(s) | 579, 760 |
| BspLI | GGNNCC | 1 cut(s) | 870 |
| BspPI | GGATC | 1 cut(s) | 572 |
| BspQI | GCTCTTC | 1 cut(s) | 219 |
| BspTI | CTTAAG | 1 cut(s) | 137 |
| BsrI | ACTGG | 5 cut(s) | 326, 607, 669, 810, 899 |
| BssECI | CCNNGG | 2 cut(s) | 444, 864 |
| BssMI | GATC | 3 cut(s) | 352, 577, 610 |
| BssT1I | CCWWGG | 2 cut(s) | 444, 864 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 560 |
| Bst4CI | ACNGT | 2 cut(s) | 514, 758 |
| Bst6I | CTCTTC | 2 cut(s) | 219, 492 |
| BstAFI | CTTAAG | 1 cut(s) | 137 |
| BstDEI | CTNAG | 4 cut(s) | 74, 182, 587, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 864 |
| BstF5I | GGATG | 5 cut(s) | 223, 359, 499, 597, 860 |
| BstKTI | GATC | 3 cut(s) | 355, 580, 613 |
| BstMAI | GTCTC | 1 cut(s) | 494 |
| BstMBI | GATC | 3 cut(s) | 352, 577, 610 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 247 |
| BstNI | CCWGG | 2 cut(s) | 291, 560 |
| BstSCI | CCNGG | 2 cut(s) | 289, 558 |
| BstSFI | CTRYAG | 1 cut(s) | 754 |
| BstSLI | GKGCMC | 1 cut(s) | 461 |
| BstV1I | GCAGC | 3 cut(s) | 514, 784, 825 |
| BsuRI | GGCC | 2 cut(s) | 294, 846 |
| BtgI | CCRYGG | 1 cut(s) | 864 |
| BtsCI | GGATG | 5 cut(s) | 223, 359, 499, 597, 860 |
| Cfr13I | GGNCC | 1 cut(s) | 845 |
| CsiI | ACCWGGT | 1 cut(s) | 558 |
| Csp6I | GTAC | 6 cut(s) | 384, 441, 606, 762, 768, 807 |
| CviAII | CATG | 5 cut(s) | 48, 95, 545, 842, 865 |
| CviQI | GTAC | 6 cut(s) | 384, 441, 606, 762, 768, 807 |
| DdeI | CTNAG | 4 cut(s) | 74, 182, 587, 747 |
| DpnI | GATC | 3 cut(s) | 354, 579, 612 |
| DpnII | GATC | 3 cut(s) | 352, 577, 610 |
| EaeI | YGGCCR | 1 cut(s) | 292 |
| Eam1104I | CTCTTC | 2 cut(s) | 219, 492 |
| EarI | CTCTTC | 2 cut(s) | 219, 492 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 2 cut(s) | 444, 864 |
| Eco24I | GRGCYC | 1 cut(s) | 231 |
| Eco32I | GATATC | 1 cut(s) | 193 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco88I | CYCGRG | 1 cut(s) | 213 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoRI | GAATTC | 1 cut(s) | 69 |
| EcoRII | CCWGG | 2 cut(s) | 289, 558 |
| EcoRV | GATATC | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 2 cut(s) | 444, 864 |
| EcoT38I | GRGCYC | 1 cut(s) | 231 |
| ErhI | CCWWGG | 2 cut(s) | 444, 864 |
| FaeI | CATG | 5 cut(s) | 51, 98, 548, 845, 868 |
| FaqI | GGGAC | 1 cut(s) | 613 |
| FatI | CATG | 5 cut(s) | 47, 94, 544, 841, 864 |
| FauI | CCCGC | 2 cut(s) | 271, 674 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| Fnu4HI | GCNGC | 3 cut(s) | 528, 798, 839 |
| FokI | GGATG | 5 cut(s) | 230, 346, 506, 604, 847 |
| FriOI | GRGCYC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 3 cut(s) | 528, 798, 839 |
| FspBI | CTAG | 1 cut(s) | 765 |
| GluI | GCNGC | 3 cut(s) | 528, 798, 839 |
| GsaI | CCCAGC | 1 cut(s) | 418 |
| HaeIII | GGCC | 2 cut(s) | 294, 846 |
| HapII | CCGG | 1 cut(s) | 238 |
| Hin1II | CATG | 5 cut(s) | 51, 98, 548, 845, 868 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HinfI | GANTC | 2 cut(s) | 10, 881 |
| HpaII | CCGG | 1 cut(s) | 238 |
| HphI | GGTGA | 4 cut(s) | 110, 380, 605, 830 |
| Hpy166II | GTNNAC | 2 cut(s) | 459, 565 |
| Hpy188I | TCNGA | 3 cut(s) | 373, 724, 886 |
| Hpy188III | TCNNGA | 5 cut(s) | 196, 215, 313, 350, 538 |
| Hpy8I | GTNNAC | 2 cut(s) | 459, 565 |
| Hpy99I | CGWCG | 2 cut(s) | 437, 740 |
| HpyAV | CCTTC | 3 cut(s) | 95, 128, 276 |
| HpyCH4III | ACNGT | 2 cut(s) | 514, 758 |
| HpyCH4IV | ACGT | 2 cut(s) | 432, 735 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 159, 459, 773, 841 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 247 |
| HpyF3I | CTNAG | 4 cut(s) | 74, 182, 587, 747 |
| HpySE526I | ACGT | 2 cut(s) | 432, 735 |
| Hsp92II | CATG | 5 cut(s) | 51, 98, 548, 845, 868 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 3 cut(s) | 352, 577, 610 |
| LguI | GCTCTTC | 1 cut(s) | 219 |
| LmnI | GCTCC | 3 cut(s) | 44, 535, 874 |
| Lsp1109I | GCAGC | 3 cut(s) | 514, 784, 825 |
| LweI | GCATC | 1 cut(s) | 458 |
| MabI | ACCWGGT | 1 cut(s) | 558 |
| MaeI | CTAG | 1 cut(s) | 765 |
| MaeII | ACGT | 2 cut(s) | 432, 735 |
| MaeIII | GTNAC | 2 cut(s) | 483, 818 |
| MalI | GATC | 3 cut(s) | 354, 579, 612 |
| MboI | GATC | 3 cut(s) | 352, 577, 610 |
| MboII | GAAGA | 4 cut(s) | 233, 236, 352, 509 |
| MhlI | GDGCHC | 2 cut(s) | 231, 461 |
| MluCI | AATT | 6 cut(s) | 69, 316, 367, 646, 673, 887 |
| MlyI | GAGTC | 2 cut(s) | 19, 875 |
| MnlI | CCTC | 7 cut(s) | 22, 35, 55, 194, 582, 773, 887 |
| MseI | TTAA | 5 cut(s) | 35, 138, 645, 699, 792 |
| MslI | CAYNNNNRTG | 2 cut(s) | 454, 464 |
| MspA1I | CMGCKG | 2 cut(s) | 586, 623 |
| MspCI | CTTAAG | 1 cut(s) | 137 |
| MspI | CCGG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 2 cut(s) | 291, 560 |
| MvaI | CCWGG | 2 cut(s) | 291, 560 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 247 |
| NcoI | CCATGG | 1 cut(s) | 864 |
| NdeII | GATC | 3 cut(s) | 352, 577, 610 |
| NlaIII | CATG | 5 cut(s) | 51, 98, 548, 845, 868 |
| NlaIV | GGNNCC | 1 cut(s) | 870 |
| NmuCI | GTSAC | 2 cut(s) | 483, 818 |
| OliI | CACNNNNGTG | 1 cut(s) | 464 |
| PciSI | GCTCTTC | 1 cut(s) | 219 |
| PflFI | GACNNNGTC | 1 cut(s) | 560 |
| PkrI | GCNGC | 3 cut(s) | 529, 799, 840 |
| PleI | GAGTC | 2 cut(s) | 18, 875 |
| PpsI | GAGTC | 2 cut(s) | 18, 875 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp6I | CCWGG | 2 cut(s) | 289, 558 |
| PspFI | CCCAGC | 1 cut(s) | 414 |
| PspGI | CCWGG | 2 cut(s) | 289, 558 |
| PspN4I | GGNNCC | 1 cut(s) | 870 |
| PspPI | GGNCC | 1 cut(s) | 845 |
| PsyI | GACNNNGTC | 1 cut(s) | 560 |
| PvuII | CAGCTG | 1 cut(s) | 623 |
| RsaI | GTAC | 6 cut(s) | 385, 442, 607, 763, 769, 808 |
| RsaNI | GTAC | 6 cut(s) | 384, 441, 606, 762, 768, 807 |
| RseI | CAYNNNNRTG | 2 cut(s) | 454, 464 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 219 |
| SaqAI | TTAA | 5 cut(s) | 35, 138, 645, 699, 792 |
| SatI | GCNGC | 3 cut(s) | 528, 798, 839 |
| Sau3AI | GATC | 3 cut(s) | 352, 577, 610 |
| Sau96I | GGNCC | 1 cut(s) | 845 |
| ScaI | AGTACT | 3 cut(s) | 385, 763, 769 |
| SchI | GAGTC | 2 cut(s) | 19, 875 |
| ScrFI | CCNGG | 2 cut(s) | 291, 560 |
| SduI | GDGCHC | 2 cut(s) | 231, 461 |
| SexAI | ACCWGGT | 1 cut(s) | 558 |
| SfaNI | GCATC | 1 cut(s) | 458 |
| SfcI | CTRYAG | 1 cut(s) | 754 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 454, 464 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| SpeI | ACTAGT | 1 cut(s) | 764 |
| Sse9I | AATT | 6 cut(s) | 69, 316, 367, 646, 673, 887 |
| SsiI | CCGC | 4 cut(s) | 278, 391, 584, 681 |
| SspI | AATATT | 1 cut(s) | 334 |
| SspMI | CTAG | 1 cut(s) | 765 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StyD4I | CCNGG | 2 cut(s) | 289, 558 |
| StyI | CCWWGG | 2 cut(s) | 444, 864 |
| TaaI | ACNGT | 2 cut(s) | 514, 758 |
| TaiI | ACGT | 2 cut(s) | 435, 738 |
| TaqI | TCGA | 2 cut(s) | 738, 879 |
| TasI | AATT | 6 cut(s) | 69, 316, 367, 646, 673, 887 |
| TatI | WGTACW | 3 cut(s) | 383, 761, 767 |
| Tru1I | TTAA | 5 cut(s) | 35, 138, 645, 699, 792 |
| Tru9I | TTAA | 5 cut(s) | 35, 138, 645, 699, 792 |
| TseFI | GTSAC | 2 cut(s) | 483, 818 |
| TseI | GCWGC | 3 cut(s) | 527, 797, 838 |
| Tsp45I | GTSAC | 2 cut(s) | 483, 818 |
| TspDTI | ATGAA | 6 cut(s) | 233, 234, 321, 460, 510, 678 |
| TspGWI | ACGGA | 1 cut(s) | 428 |
| Tth111I | GACNNNGTC | 1 cut(s) | 560 |
| Vha464I | CTTAAG | 1 cut(s) | 137 |
| VneI | GTGCAC | 1 cut(s) | 457 |
| XapI | RAATTY | 1 cut(s) | 69 |
| XspI | CTAG | 1 cut(s) | 765 |
| ZrmI | AGTACT | 3 cut(s) | 385, 763, 769 |