Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thioredoxin | PF00085 | 68 - 164 | 1.6e-23 | Thioredoxin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 458 |
| AccB1I | GGYRCC | 1 cut(s) | 458 |
| AccBSI | CCGCTC | 1 cut(s) | 115 |
| AccII | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| AciI | CCGC | 7 cut(s) | 42, 113, 181, 197, 301, 320, 362 |
| AdeI | CACNNNGTG | 1 cut(s) | 304 |
| AfaI | GTAC | 2 cut(s) | 408, 460 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 361, 495 |
| AgsI | TTSAA | 1 cut(s) | 166 |
| AluBI | AGCT | 4 cut(s) | 148, 194, 273, 340 |
| AluI | AGCT | 4 cut(s) | 148, 194, 273, 340 |
| Alw21I | GWGCWC | 1 cut(s) | 196 |
| AoxI | GGCC | 1 cut(s) | 281 |
| ApeKI | GCWGC | 2 cut(s) | 5, 485 |
| Asp718I | GGTACC | 1 cut(s) | 458 |
| AspLEI | GCGC | 2 cut(s) | 41, 126 |
| AspS9I | GGNCC | 4 cut(s) | 138, 281, 295, 499 |
| AvaII | GGWCC | 3 cut(s) | 138, 295, 499 |
| BanI | GGYRCC | 1 cut(s) | 458 |
| BanII | GRGCYC | 1 cut(s) | 196 |
| BauI | CACGAG | 1 cut(s) | 214 |
| Bbv12I | GWGCWC | 1 cut(s) | 196 |
| BbvCI | CCTCAGC | 1 cut(s) | 384 |
| BbvI | GCAGC | 1 cut(s) | 472 |
| BccI | CCATC | 1 cut(s) | 286 |
| BceAI | ACGGC | 1 cut(s) | 268 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 248, 282 |
| BfaI | CTAG | 1 cut(s) | 254 |
| BisI | GCNGC | 3 cut(s) | 6, 42, 486 |
| BlsI | GCNGC | 3 cut(s) | 7, 43, 487 |
| Bme18I | GGWCC | 3 cut(s) | 138, 295, 499 |
| BmgT120I | GGNCC | 4 cut(s) | 138, 281, 295, 499 |
| BmiI | GGNNCC | 2 cut(s) | 460, 500 |
| Bpu10I | CCTNAGC | 1 cut(s) | 384 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 79, 109 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 361, 495 |
| Bse118I | RCCGGY | 1 cut(s) | 199 |
| BseGI | GGATG | 2 cut(s) | 297, 370 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 361, 495 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BseXI | GCAGC | 1 cut(s) | 472 |
| Bsh1236I | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| BshFI | GGCC | 1 cut(s) | 283 |
| BshNI | GGYRCC | 1 cut(s) | 458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 196 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 361, 495 |
| BsnI | GGCC | 1 cut(s) | 283 |
| Bsp1286I | GDGCHC | 1 cut(s) | 196 |
| BspACI | CCGC | 7 cut(s) | 42, 113, 181, 197, 301, 320, 362 |
| BspANI | GGCC | 1 cut(s) | 283 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspFNI | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| BspLI | GGNNCC | 2 cut(s) | 460, 500 |
| BspT107I | GGYRCC | 1 cut(s) | 458 |
| BsrBI | CCGCTC | 1 cut(s) | 115 |
| BsrFI | RCCGGY | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 199 |
| BssSI | CACGAG | 1 cut(s) | 214 |
| Bst2BI | CACGAG | 1 cut(s) | 214 |
| Bst4CI | ACNGT | 2 cut(s) | 239, 451 |
| BstC8I | GCNNGC | 3 cut(s) | 271, 334, 338 |
| BstDEI | CTNAG | 1 cut(s) | 384 |
| BstEII | GGTNACC | 1 cut(s) | 202 |
| BstF5I | GGATG | 2 cut(s) | 297, 370 |
| BstFNI | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| BstHHI | GCGC | 2 cut(s) | 41, 126 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 36, 121 |
| BstPI | GGTNACC | 1 cut(s) | 202 |
| BstUI | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| BstV1I | GCAGC | 1 cut(s) | 472 |
| BsuRI | GGCC | 1 cut(s) | 283 |
| BtsCI | GGATG | 2 cut(s) | 297, 370 |
| BtsIMutI | CAGTG | 2 cut(s) | 244, 447 |
| Cac8I | GCNNGC | 3 cut(s) | 271, 334, 338 |
| CfoI | GCGC | 2 cut(s) | 41, 126 |
| Cfr10I | RCCGGY | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 4 cut(s) | 138, 281, 295, 499 |
| Csp6I | GTAC | 2 cut(s) | 407, 459 |
| CviAII | CATG | 1 cut(s) | 463 |
| CviJI | RGCY | 7 cut(s) | 5, 148, 194, 273, 283, 340, 404 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 148, 194, 273, 283, 340, 404 |
| CviQI | GTAC | 2 cut(s) | 407, 459 |
| DdeI | CTNAG | 1 cut(s) | 384 |
| DraIII | CACNNNGTG | 1 cut(s) | 304 |
| EciI | GGCGGA | 1 cut(s) | 186 |
| Ecl136II | GAGCTC | 1 cut(s) | 194 |
| Eco24I | GRGCYC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 3 cut(s) | 138, 295, 499 |
| Eco53kI | GAGCTC | 1 cut(s) | 194 |
| Eco91I | GGTNACC | 1 cut(s) | 202 |
| EcoICRI | GAGCTC | 1 cut(s) | 194 |
| EcoO109I | RGGNCCY | 1 cut(s) | 499 |
| EcoO65I | GGTNACC | 1 cut(s) | 202 |
| EcoT38I | GRGCYC | 1 cut(s) | 196 |
| FaeI | CATG | 1 cut(s) | 466 |
| FaiI | YATR | 5 cut(s) | 267, 330, 393, 464, 480 |
| FatI | CATG | 1 cut(s) | 462 |
| FauI | CCCGC | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 42, 486 |
| FokI | GGATG | 2 cut(s) | 304, 377 |
| FriOI | GRGCYC | 1 cut(s) | 196 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 42, 486 |
| FspBI | CTAG | 1 cut(s) | 254 |
| GlaI | GCGC | 2 cut(s) | 40, 125 |
| GluI | GCNGC | 3 cut(s) | 6, 42, 486 |
| HaeIII | GGCC | 1 cut(s) | 283 |
| HapII | CCGG | 1 cut(s) | 200 |
| HhaI | GCGC | 2 cut(s) | 41, 126 |
| Hin1II | CATG | 1 cut(s) | 466 |
| Hin6I | GCGC | 2 cut(s) | 39, 124 |
| HinP1I | GCGC | 2 cut(s) | 39, 124 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| HinfI | GANTC | 3 cut(s) | 185, 212, 505 |
| HpaII | CCGG | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 298 |
| Hpy188I | TCNGA | 1 cut(s) | 119 |
| Hpy188III | TCNNGA | 3 cut(s) | 166, 189, 502 |
| Hpy8I | GTNNAC | 1 cut(s) | 298 |
| HpyAV | CCTTC | 4 cut(s) | 70, 74, 172, 181 |
| HpyCH4III | ACNGT | 2 cut(s) | 239, 451 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 376 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 36, 121 |
| HpyF3I | CTNAG | 1 cut(s) | 384 |
| Hsp92II | CATG | 1 cut(s) | 466 |
| HspAI | GCGC | 2 cut(s) | 39, 124 |
| KpnI | GGTACC | 1 cut(s) | 462 |
| LmnI | GCTCC | 3 cut(s) | 35, 120, 199 |
| LpnPI | CCDG | 6 cut(s) | 202, 213, 259, 261, 318, 423 |
| Lsp1109I | GCAGC | 1 cut(s) | 472 |
| MaeI | CTAG | 1 cut(s) | 254 |
| MaeIII | GTNAC | 2 cut(s) | 202, 443 |
| MbiI | CCGCTC | 1 cut(s) | 115 |
| MboII | GAAGA | 1 cut(s) | 448 |
| MhlI | GDGCHC | 1 cut(s) | 196 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MnlI | CCTC | 9 cut(s) | 19, 22, 43, 56, 113, 165, 365, 379, 489 |
| MseI | TTAA | 4 cut(s) | 144, 234, 399, 426 |
| MspI | CCGG | 1 cut(s) | 200 |
| MvnI | CGCG | 5 cut(s) | 39, 183, 303, 320, 362 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 36, 121 |
| NlaIII | CATG | 1 cut(s) | 466 |
| NlaIV | GGNNCC | 2 cut(s) | 460, 500 |
| NmuCI | GTSAC | 1 cut(s) | 443 |
| PfeI | GAWTC | 2 cut(s) | 185, 505 |
| PkrI | GCNGC | 3 cut(s) | 7, 43, 487 |
| PleI | GAGTC | 1 cut(s) | 206 |
| PpsI | GAGTC | 1 cut(s) | 206 |
| PpuMI | RGGWCCY | 1 cut(s) | 499 |
| Psp124BI | GAGCTC | 1 cut(s) | 196 |
| Psp5II | RGGWCCY | 1 cut(s) | 499 |
| PspEI | GGTNACC | 1 cut(s) | 202 |
| PspN4I | GGNNCC | 2 cut(s) | 460, 500 |
| PspPI | GGNCC | 4 cut(s) | 138, 281, 295, 499 |
| PspPPI | RGGWCCY | 1 cut(s) | 499 |
| RsaI | GTAC | 2 cut(s) | 408, 460 |
| RsaNI | GTAC | 2 cut(s) | 407, 459 |
| SacI | GAGCTC | 1 cut(s) | 196 |
| SaqAI | TTAA | 4 cut(s) | 144, 234, 399, 426 |
| SatI | GCNGC | 3 cut(s) | 6, 42, 486 |
| Sau96I | GGNCC | 4 cut(s) | 138, 281, 295, 499 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SduI | GDGCHC | 1 cut(s) | 196 |
| SetI | ASST | 9 cut(s) | 62, 150, 157, 164, 173, 196, 275, 342, 412 |
| SinI | GGWCC | 3 cut(s) | 138, 295, 499 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| SsiI | CCGC | 7 cut(s) | 42, 113, 181, 197, 301, 320, 362 |
| SspMI | CTAG | 1 cut(s) | 254 |
| SstI | GAGCTC | 1 cut(s) | 196 |
| TaaI | ACNGT | 2 cut(s) | 239, 451 |
| TaqI | TCGA | 1 cut(s) | 258 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 2 cut(s) | 185, 505 |
| Tru1I | TTAA | 4 cut(s) | 144, 234, 399, 426 |
| Tru9I | TTAA | 4 cut(s) | 144, 234, 399, 426 |
| TscAI | CASTG | 2 cut(s) | 244, 454 |
| TseFI | GTSAC | 1 cut(s) | 443 |
| TseI | GCWGC | 2 cut(s) | 5, 485 |
| Tsp45I | GTSAC | 1 cut(s) | 443 |
| TspDTI | ATGAA | 1 cut(s) | 327 |
| TspGWI | ACGGA | 3 cut(s) | 130, 166, 498 |
| TspRI | CASTG | 2 cut(s) | 244, 454 |
| VpaK11BI | GGWCC | 3 cut(s) | 138, 295, 499 |
| XspI | CTAG | 1 cut(s) | 254 |