Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 8, 2345 |
| Acc36I | ACCTGC | 1 cut(s) | 481 |
| AccB1I | GGYRCC | 1 cut(s) | 416 |
| AccI | GTMKAC | 1 cut(s) | 713 |
| AciI | CCGC | 3 cut(s) | 88, 873, 2024 |
| AclWI | GGATC | 4 cut(s) | 910, 2026, 2850, 3070 |
| AcsI | RAATTY | 6 cut(s) | 109, 621, 726, 2170, 2214, 2352 |
| AcuI | CTGAAG | 2 cut(s) | 648, 2184 |
| AcvI | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| AcyI | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| AfaI | GTAC | 5 cut(s) | 97, 766, 2859, 2919, 2950 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 87, 1770, 2983 |
| AflII | CTTAAG | 1 cut(s) | 1223 |
| AflIII | ACRYGT | 1 cut(s) | 1816 |
| AgeI | ACCGGT | 1 cut(s) | 419 |
| AgsI | TTSAA | 8 cut(s) | 385, 1508, 1514, 1918, 2157, 2222, 2649, 3052 |
| AhlI | ACTAGT | 1 cut(s) | 1003 |
| AjnI | CCWGG | 2 cut(s) | 1317, 1959 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 831, 863 |
| Alw21I | GWGCWC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| Alw26I | GTCTC | 2 cut(s) | 1127, 1883 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 4 cut(s) | 910, 2026, 2850, 3070 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2528 |
| AoxI | GGCC | 5 cut(s) | 77, 173, 691, 985, 2034 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApoI | RAATTY | 6 cut(s) | 109, 621, 726, 2170, 2214, 2352 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 290, 322 |
| AseI | ATTAAT | 1 cut(s) | 2775 |
| AsiGI | ACCGGT | 1 cut(s) | 419 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1263, 1404, 1818 |
| AspLEI | GCGC | 1 cut(s) | 792 |
| AspS9I | GGNCC | 3 cut(s) | 78, 311, 610 |
| AsuC2I | CCSGG | 1 cut(s) | 1526 |
| AsuHPI | GGTGA | 3 cut(s) | 863, 970, 1514 |
| AsuII | TTCGAA | 1 cut(s) | 113 |
| AvaII | GGWCC | 2 cut(s) | 311, 610 |
| AxyI | CCTNAGG | 2 cut(s) | 982, 1188 |
| BaeGI | GKGCMC | 1 cut(s) | 931 |
| BanI | GGYRCC | 1 cut(s) | 416 |
| BanII | GRGCYC | 2 cut(s) | 1416, 1461 |
| BauI | CACGAG | 2 cut(s) | 939, 2111 |
| BbrPI | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| BbsI | GAAGAC | 2 cut(s) | 636, 2517 |
| Bbv12I | GWGCWC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| BbvCI | CCTCAGC | 1 cut(s) | 477 |
| BccI | CCATC | 9 cut(s) | 37, 64, 371, 652, 659, 1167, 1541, 1772, 2809 |
| BceAI | ACGGC | 1 cut(s) | 972 |
| BciT130I | CCWGG | 2 cut(s) | 1319, 1961 |
| BcnI | CCSGG | 1 cut(s) | 1526 |
| BcoDI | GTCTC | 2 cut(s) | 1127, 1883 |
| BcuI | ACTAGT | 1 cut(s) | 1003 |
| BfmI | CTRYAG | 2 cut(s) | 544, 1628 |
| BfrI | CTTAAG | 1 cut(s) | 1223 |
| BfuAI | ACCTGC | 1 cut(s) | 481 |
| BglII | AGATCT | 1 cut(s) | 1750 |
| Bme1390I | CCNGG | 3 cut(s) | 1319, 1526, 1961 |
| Bme18I | GGWCC | 2 cut(s) | 311, 610 |
| BmgT120I | GGNCC | 3 cut(s) | 78, 311, 610 |
| BmiI | GGNNCC | 2 cut(s) | 418, 3059 |
| BmrFI | CCNGG | 3 cut(s) | 1319, 1526, 1961 |
| BmrI | ACTGGG | 1 cut(s) | 2605 |
| BmuI | ACTGGG | 1 cut(s) | 2605 |
| BpiI | GAAGAC | 2 cut(s) | 636, 2517 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 599, 631 |
| BpmI | CTGGAG | 3 cut(s) | 588, 1923, 1982 |
| Bpu10I | CCTNAGC | 1 cut(s) | 477 |
| Bpu14I | TTCGAA | 1 cut(s) | 113 |
| BpuEI | CTTGAG | 2 cut(s) | 601, 1445 |
| BpuMI | CCSGG | 1 cut(s) | 1526 |
| BsaAI | YACGTR | 3 cut(s) | 932, 1277, 1304 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| BsaJI | CCNNGG | 2 cut(s) | 74, 494 |
| BsaWI | WCCGGW | 2 cut(s) | 419, 1737 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 182, 212, 1093, 1123 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 87, 1770, 2983 |
| Bse118I | RCCGGY | 1 cut(s) | 419 |
| Bse1I | ACTGG | 2 cut(s) | 2248, 2611 |
| Bse21I | CCTNAGG | 2 cut(s) | 982, 1188 |
| Bse3DI | GCAATG | 1 cut(s) | 1499 |
| BseBI | CCWGG | 2 cut(s) | 1319, 1961 |
| BseDI | CCNNGG | 2 cut(s) | 74, 494 |
| BseGI | GGATG | 8 cut(s) | 48, 50, 453, 670, 1135, 2046, 2717, 2737 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 87, 1770, 2983 |
| BseMI | GCAATG | 1 cut(s) | 1499 |
| BseNI | ACTGG | 2 cut(s) | 2248, 2611 |
| BseRI | GAGGAG | 2 cut(s) | 203, 872 |
| BseSI | GKGCMC | 1 cut(s) | 931 |
| BseYI | CCCAGC | 1 cut(s) | 2116 |
| BsgI | GTGCAG | 1 cut(s) | 373 |
| BshFI | GGCC | 5 cut(s) | 79, 175, 693, 987, 2036 |
| BshNI | GGYRCC | 1 cut(s) | 416 |
| BshTI | ACCGGT | 1 cut(s) | 419 |
| BsiHKAI | GWGCWC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| BsiSI | CCGG | 3 cut(s) | 420, 1525, 1738 |
| BslFI | GGGAC | 3 cut(s) | 49, 1049, 2960 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 87, 1770, 2983 |
| BsmAI | GTCTC | 2 cut(s) | 1127, 1883 |
| BsmFI | GGGAC | 3 cut(s) | 49, 1049, 2960 |
| BsmI | GAATGC | 2 cut(s) | 1012, 2137 |
| BsnI | GGCC | 5 cut(s) | 79, 175, 693, 987, 2036 |
| Bsp119I | TTCGAA | 1 cut(s) | 113 |
| Bsp1286I | GDGCHC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| Bsp1407I | TGTACA | 1 cut(s) | 2917 |
| BspACI | CCGC | 3 cut(s) | 88, 873, 2024 |
| BspANI | GGCC | 5 cut(s) | 79, 175, 693, 987, 2036 |
| BspHI | TCATGA | 1 cut(s) | 2797 |
| BspLI | GGNNCC | 2 cut(s) | 418, 3059 |
| BspMI | ACCTGC | 1 cut(s) | 481 |
| BspPI | GGATC | 4 cut(s) | 910, 2026, 2850, 3070 |
| BspT104I | TTCGAA | 1 cut(s) | 113 |
| BspT107I | GGYRCC | 1 cut(s) | 416 |
| BspTI | CTTAAG | 1 cut(s) | 1223 |
| BsrDI | GCAATG | 1 cut(s) | 1499 |
| BsrFI | RCCGGY | 1 cut(s) | 419 |
| BsrGI | TGTACA | 1 cut(s) | 2917 |
| BsrI | ACTGG | 2 cut(s) | 2248, 2611 |
| BssAI | RCCGGY | 1 cut(s) | 419 |
| BssECI | CCNNGG | 2 cut(s) | 74, 494 |
| BssNAI | GTATAC | 1 cut(s) | 714 |
| BssNI | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| BssSI | CACGAG | 2 cut(s) | 939, 2111 |
| Bst1107I | GTATAC | 1 cut(s) | 714 |
| Bst2BI | CACGAG | 2 cut(s) | 939, 2111 |
| Bst2UI | CCWGG | 2 cut(s) | 1319, 1961 |
| Bst6I | CTCTTC | 4 cut(s) | 783, 2274, 2697, 3021 |
| BstACI | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| BstAFI | CTTAAG | 1 cut(s) | 1223 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 160, 536, 2456 |
| BstAUI | TGTACA | 1 cut(s) | 2917 |
| BstBAI | YACGTR | 3 cut(s) | 932, 1277, 1304 |
| BstBI | TTCGAA | 1 cut(s) | 113 |
| BstC8I | GCNNGC | 6 cut(s) | 173, 1427, 1926, 2766, 2770, 2943 |
| BstDSI | CCRYGG | 1 cut(s) | 494 |
| BstF5I | GGATG | 8 cut(s) | 48, 50, 453, 670, 1135, 2046, 2717, 2737 |
| BstHHI | GCGC | 1 cut(s) | 792 |
| BstMAI | GTCTC | 2 cut(s) | 1127, 1883 |
| BstNI | CCWGG | 2 cut(s) | 1319, 1961 |
| BstNSI | RCATGY | 5 cut(s) | 206, 1820, 1936, 2772, 2945 |
| BstSCI | CCNGG | 3 cut(s) | 1317, 1524, 1959 |
| BstSFI | CTRYAG | 2 cut(s) | 544, 1628 |
| BstSLI | GKGCMC | 1 cut(s) | 931 |
| BstV2I | GAAGAC | 2 cut(s) | 636, 2517 |
| BstX2I | RGATCY | 3 cut(s) | 1750, 2018, 3075 |
| BstYI | RGATCY | 3 cut(s) | 1750, 2018, 3075 |
| BstZ17I | GTATAC | 1 cut(s) | 714 |
| Bsu36I | CCTNAGG | 2 cut(s) | 982, 1188 |
| BsuRI | GGCC | 5 cut(s) | 79, 175, 693, 987, 2036 |
| BtgI | CCRYGG | 1 cut(s) | 494 |
| BtgZI | GCGATG | 1 cut(s) | 1081 |
| BtsCI | GGATG | 8 cut(s) | 48, 50, 453, 670, 1135, 2046, 2717, 2737 |
| BtsIMutI | CAGTG | 9 cut(s) | 15, 246, 390, 1221, 1620, 2603, 2647, 2661, 2878 |
| BveI | ACCTGC | 1 cut(s) | 481 |
| Cac8I | GCNNGC | 6 cut(s) | 173, 1427, 1926, 2766, 2770, 2943 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2528 |
| CciI | TCATGA | 1 cut(s) | 2797 |
| CfoI | GCGC | 1 cut(s) | 792 |
| Cfr10I | RCCGGY | 1 cut(s) | 419 |
| Cfr13I | GGNCC | 3 cut(s) | 78, 311, 610 |
| CseI | GACGC | 1 cut(s) | 22 |
| Csp6I | GTAC | 5 cut(s) | 96, 765, 2858, 2918, 2949 |
| CspAI | ACCGGT | 1 cut(s) | 419 |
| CviQI | GTAC | 5 cut(s) | 96, 765, 2858, 2918, 2949 |
| DraI | TTTAAA | 1 cut(s) | 1746 |
| Eam1104I | CTCTTC | 4 cut(s) | 783, 2274, 2697, 3021 |
| EarI | CTCTTC | 4 cut(s) | 783, 2274, 2697, 3021 |
| Ecl136II | GAGCTC | 2 cut(s) | 1414, 1459 |
| Eco147I | AGGCCT | 1 cut(s) | 693 |
| Eco24I | GRGCYC | 2 cut(s) | 1416, 1461 |
| Eco47I | GGWCC | 2 cut(s) | 311, 610 |
| Eco53kI | GAGCTC | 2 cut(s) | 1414, 1459 |
| Eco57I | CTGAAG | 2 cut(s) | 648, 2184 |
| Eco72I | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| Eco81I | CCTNAGG | 2 cut(s) | 982, 1188 |
| EcoICRI | GAGCTC | 2 cut(s) | 1414, 1459 |
| EcoRI | GAATTC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 2 cut(s) | 1317, 1959 |
| EcoT22I | ATGCAT | 2 cut(s) | 1808, 2774 |
| EcoT38I | GRGCYC | 2 cut(s) | 1416, 1461 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1751, 1783 |
| FaqI | GGGAC | 3 cut(s) | 49, 1049, 2960 |
| FauNDI | CATATG | 2 cut(s) | 403, 2628 |
| FblI | GTMKAC | 1 cut(s) | 713 |
| FokI | GGATG | 8 cut(s) | 37, 55, 460, 677, 1142, 2033, 2704, 2744 |
| FriOI | GRGCYC | 2 cut(s) | 1416, 1461 |
| GlaI | GCGC | 1 cut(s) | 791 |
| GsaI | CCCAGC | 1 cut(s) | 2120 |
| GsuI | CTGGAG | 3 cut(s) | 588, 1923, 1982 |
| HaeIII | GGCC | 5 cut(s) | 79, 175, 693, 987, 2036 |
| HapII | CCGG | 3 cut(s) | 420, 1525, 1738 |
| HgaI | GACGC | 1 cut(s) | 22 |
| HhaI | GCGC | 1 cut(s) | 792 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| Hin6I | GCGC | 1 cut(s) | 790 |
| HinP1I | GCGC | 1 cut(s) | 790 |
| HincII | GTYRAC | 2 cut(s) | 2616, 3109 |
| HindII | GTYRAC | 2 cut(s) | 2616, 3109 |
| HindIII | AAGCTT | 2 cut(s) | 1043, 2980 |
| HpaII | CCGG | 3 cut(s) | 420, 1525, 1738 |
| HphI | GGTGA | 3 cut(s) | 863, 970, 1514 |
| Hpy166II | GTNNAC | 7 cut(s) | 714, 929, 1822, 2257, 2433, 2616, 3109 |
| Hpy8I | GTNNAC | 7 cut(s) | 714, 929, 1822, 2257, 2433, 2616, 3109 |
| HpyAV | CCTTC | 8 cut(s) | 205, 434, 1330, 1546, 1912, 2458, 2662, 3106 |
| HpyCH4IV | ACGT | 5 cut(s) | 5, 931, 1276, 1303, 2342 |
| HpySE526I | ACGT | 5 cut(s) | 5, 931, 1276, 1303, 2342 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 14, 2342 |
| HspAI | GCGC | 1 cut(s) | 790 |
| LmnI | GCTCC | 9 cut(s) | 190, 607, 859, 1009, 1555, 1921, 1963, 3014, 3057 |
| MaeII | ACGT | 5 cut(s) | 5, 931, 1276, 1303, 2342 |
| MaeIII | GTNAC | 7 cut(s) | 10, 244, 556, 1065, 1490, 1614, 2026 |
| MfeI | CAATTG | 1 cut(s) | 1361 |
| MflI | RGATCY | 3 cut(s) | 1750, 2018, 3075 |
| MhlI | GDGCHC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| MlyI | GAGTC | 3 cut(s) | 1073, 1129, 2506 |
| MmeI | TCCRAC | 1 cut(s) | 720 |
| Mph1103I | ATGCAT | 2 cut(s) | 1808, 2774 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1263, 1404, 1818 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2193, 2543, 2730 |
| MspA1I | CMGCKG | 1 cut(s) | 2528 |
| MspCI | CTTAAG | 1 cut(s) | 1223 |
| MspI | CCGG | 3 cut(s) | 420, 1525, 1738 |
| MspR9I | CCNGG | 3 cut(s) | 1319, 1526, 1961 |
| MunI | CAATTG | 1 cut(s) | 1361 |
| Mva1269I | GAATGC | 2 cut(s) | 1012, 2137 |
| MvaI | CCWGG | 2 cut(s) | 1319, 1961 |
| NciI | CCSGG | 1 cut(s) | 1526 |
| NdeI | CATATG | 2 cut(s) | 403, 2628 |
| NlaIV | GGNNCC | 2 cut(s) | 418, 3059 |
| NmeAIII | GCCGAG | 1 cut(s) | 55 |
| NmuCI | GTSAC | 4 cut(s) | 10, 244, 556, 1065 |
| NsiI | ATGCAT | 2 cut(s) | 1808, 2774 |
| NspI | RCATGY | 5 cut(s) | 206, 1820, 1936, 2772, 2945 |
| NspV | TTCGAA | 1 cut(s) | 113 |
| PaeI | GCATGC | 2 cut(s) | 2772, 2945 |
| PagI | TCATGA | 1 cut(s) | 2797 |
| PceI | AGGCCT | 1 cut(s) | 693 |
| PciI | ACATGT | 1 cut(s) | 1816 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 937, 1273 |
| PctI | GAATGC | 2 cut(s) | 1012, 2137 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1263, 1404, 1818 |
| PfeI | GAWTC | 9 cut(s) | 20, 115, 1519, 1865, 2222, 2241, 2531, 2657, 2819 |
| PfoI | TCCNGGA | 1 cut(s) | 1317 |
| PinAI | ACCGGT | 1 cut(s) | 419 |
| PleI | GAGTC | 3 cut(s) | 1072, 1129, 2505 |
| PmaCI | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| PmlI | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| PpsI | GAGTC | 3 cut(s) | 1072, 1129, 2505 |
| Ppu21I | YACGTR | 3 cut(s) | 932, 1277, 1304 |
| PscI | ACATGT | 1 cut(s) | 1816 |
| PshBI | ATTAAT | 1 cut(s) | 2775 |
| Psp124BI | GAGCTC | 2 cut(s) | 1416, 1461 |
| Psp6I | CCWGG | 2 cut(s) | 1317, 1959 |
| PspCI | CACGTG | 3 cut(s) | 932, 1277, 1304 |
| PspFI | CCCAGC | 1 cut(s) | 2116 |
| PspGI | CCWGG | 2 cut(s) | 1317, 1959 |
| PspN4I | GGNNCC | 2 cut(s) | 418, 3059 |
| PspPI | GGNCC | 3 cut(s) | 78, 311, 610 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2528 |
| PsuI | RGATCY | 3 cut(s) | 1750, 2018, 3075 |
| PvuII | CAGCTG | 1 cut(s) | 2528 |
| RsaI | GTAC | 5 cut(s) | 97, 766, 2859, 2919, 2950 |
| RsaNI | GTAC | 5 cut(s) | 96, 765, 2858, 2918, 2949 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2193, 2543, 2730 |
| SacI | GAGCTC | 2 cut(s) | 1416, 1461 |
| Sau96I | GGNCC | 3 cut(s) | 78, 311, 610 |
| SchI | GAGTC | 3 cut(s) | 1073, 1129, 2506 |
| ScrFI | CCNGG | 3 cut(s) | 1319, 1526, 1961 |
| SduI | GDGCHC | 5 cut(s) | 165, 931, 1416, 1461, 2570 |
| SfcI | CTRYAG | 2 cut(s) | 544, 1628 |
| SfuI | TTCGAA | 1 cut(s) | 113 |
| SinI | GGWCC | 2 cut(s) | 311, 610 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2193, 2543, 2730 |
| SmlI | CTYRAG | 3 cut(s) | 616, 1223, 1460 |
| SmoI | CTYRAG | 3 cut(s) | 616, 1223, 1460 |
| SpeI | ACTAGT | 1 cut(s) | 1003 |
| SphI | GCATGC | 2 cut(s) | 2772, 2945 |
| SseBI | AGGCCT | 1 cut(s) | 693 |
| SsiI | CCGC | 3 cut(s) | 88, 873, 2024 |
| SstI | GAGCTC | 2 cut(s) | 1416, 1461 |
| StuI | AGGCCT | 1 cut(s) | 693 |
| StyD4I | CCNGG | 3 cut(s) | 1317, 1524, 1959 |
| TaiI | ACGT | 5 cut(s) | 8, 934, 1279, 1306, 2345 |
| TaqI | TCGA | 4 cut(s) | 113, 525, 696, 2655 |
| TaqII | GACCGA | 1 cut(s) | 299 |
| TatI | WGTACW | 2 cut(s) | 2857, 2917 |
| TauI | GCSGC | 2 cut(s) | 91, 876 |
| TfiI | GAWTC | 9 cut(s) | 20, 115, 1519, 1865, 2222, 2241, 2531, 2657, 2819 |
| TscAI | CASTG | 9 cut(s) | 15, 253, 397, 1221, 1627, 2603, 2647, 2668, 2878 |
| TseFI | GTSAC | 4 cut(s) | 10, 244, 556, 1065 |
| Tsp45I | GTSAC | 4 cut(s) | 10, 244, 556, 1065 |
| TspGWI | ACGGA | 2 cut(s) | 799, 2045 |
| TspRI | CASTG | 9 cut(s) | 15, 253, 397, 1221, 1627, 2603, 2647, 2668, 2878 |
| Vha464I | CTTAAG | 1 cut(s) | 1223 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 2 cut(s) | 311, 610 |
| VspI | ATTAAT | 1 cut(s) | 2775 |
| XapI | RAATTY | 6 cut(s) | 109, 621, 726, 2170, 2214, 2352 |
| XbaI | TCTAGA | 1 cut(s) | 2588 |
| XceI | RCATGY | 5 cut(s) | 206, 1820, 1936, 2772, 2945 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2443, 2761 |
| XmiI | GTMKAC | 1 cut(s) | 713 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1263, 1404, 1818 |
| ZraI | GACGTC | 2 cut(s) | 6, 2343 |
| Zsp2I | ATGCAT | 2 cut(s) | 1808, 2774 |