Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

3099417 .. 3099620

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0025200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGTCGCTGTGAGGCCTTCTCGAAATTCTCACCCTCTTGTTCATCGGAGCAACTCCGTGAGTCTCCATTTTCCTCACCTCCGACTGAAAATGAACCTCCGGTGGCGGATGGTCATGCATTTCCTGATGACCCGGCGGCTCGGAGTGCATATGAACCATATGCGGCGGCGATTGCAACCGGCGGCGAGTACGAGCCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

67

Amino Acids

7.13

Weight (kDa)

4.28

Isoelectric Point (pI)

100.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	107, 137, 164, 167, 183
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	24, 69
BccI	CCATC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	69
BisI	GCNGC	4 cut(s)	138, 165, 168, 184
BlsI	GCNGC	4 cut(s)	139, 166, 169, 185
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	179
BseGI	GGATG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	101, 134, 180
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	17
BspACI	CCGC	5 cut(s)	107, 137, 164, 167, 183
BspANI	GGCC	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 173
BstSCI	CCNGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	116, 201
CviJI	RGCY	3 cut(s)	17, 140, 196
CviKI_1	RGCY	3 cut(s)	17, 140, 196
CviQI	GTAC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	121
FaeI	CATG	2 cut(s)	119, 204
FaiI	YATR	6 cut(s)	117, 151, 153, 160, 162, 202
FatI	CATG	2 cut(s)	115, 200
FauNDI	CATATG	2 cut(s)	151, 160
Fnu4HI	GCNGC	4 cut(s)	138, 165, 168, 184
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	138, 165, 168, 184
GluI	GCNGC	4 cut(s)	138, 165, 168, 184
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	101, 134, 180
Hin1II	CATG	2 cut(s)	119, 204
HinfI	GANTC	2 cut(s)	4, 62
HpaII	CCGG	3 cut(s)	101, 134, 180
HphI	GGTGA	2 cut(s)	24, 69
Hpy188I	TCNGA	3 cut(s)	49, 84, 144
Hpy188III	TCNNGA	3 cut(s)	22, 125, 201
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	119, 149, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 173
Hsp92II	CATG	2 cut(s)	119, 204
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	114, 138, 147, 193
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	13, 71
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	5 cut(s)	7, 46, 85, 90, 108
Mph1103I	ATGCAT	1 cut(s)	121
MspI	CCGG	3 cut(s)	101, 134, 180
MspR9I	CCNGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	146, 173
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	2 cut(s)	151, 160
NlaIII	CATG	2 cut(s)	119, 204
NsiI	ATGCAT	1 cut(s)	121
PagI	TCATGA	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	139, 166, 169, 185
PleI	GAGTC	2 cut(s)	12, 70
PpsI	GAGTC	2 cut(s)	12, 70
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	4 cut(s)	138, 165, 168, 184
SchI	GAGTC	2 cut(s)	13, 71
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	2 cut(s)	82, 100
Sse9I	AATT	1 cut(s)	26
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	5 cut(s)	107, 137, 164, 167, 183
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	26
TauI	GCSGC	4 cut(s)	140, 167, 170, 186
TspDTI	ATGAA	4 cut(s)	33, 108, 168, 189
TspGWI	ACGGA	1 cut(s)	47
XapI	RAATTY	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.