Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PORR | PF11955 | 50 - 374 | 3.7e-107 | Plant organelle RNA recognition domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 135 |
| AciI | CCGC | 2 cut(s) | 722, 953 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcoI | YGGCCR | 2 cut(s) | 830, 1153 |
| AcsI | RAATTY | 1 cut(s) | 58 |
| AcuI | CTGAAG | 1 cut(s) | 255 |
| AfaI | GTAC | 3 cut(s) | 80, 297, 1024 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 736, 737 |
| AflII | CTTAAG | 1 cut(s) | 932 |
| AgsI | TTSAA | 5 cut(s) | 63, 344, 764, 1135, 1211 |
| AjnI | CCWGG | 2 cut(s) | 371, 985 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1142, 1172, 1174, 1204, 1223, 1255 |
| AluBI | AGCT | 4 cut(s) | 40, 398, 626, 922 |
| AluI | AGCT | 4 cut(s) | 40, 398, 626, 922 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 966 |
| Alw26I | GTCTC | 2 cut(s) | 652, 973 |
| Alw44I | GTGCAC | 1 cut(s) | 962 |
| AlwI | GGATC | 1 cut(s) | 233 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 249, 790 |
| AoxI | GGCC | 2 cut(s) | 830, 1153 |
| ApaLI | GTGCAC | 1 cut(s) | 962 |
| ApeKI | GCWGC | 1 cut(s) | 395 |
| ApoI | RAATTY | 1 cut(s) | 58 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 146, 178 |
| AspS9I | GGNCC | 1 cut(s) | 698 |
| AsuC2I | CCSGG | 1 cut(s) | 563 |
| AsuHPI | GGTGA | 3 cut(s) | 368, 650, 795 |
| AvaII | GGWCC | 1 cut(s) | 698 |
| BaeGI | GKGCMC | 1 cut(s) | 966 |
| BbsI | GAAGAC | 1 cut(s) | 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 966 |
| BbvI | GCAGC | 1 cut(s) | 407 |
| BccI | CCATC | 7 cut(s) | 215, 340, 514, 572, 602, 1217, 1271 |
| BciT130I | CCWGG | 2 cut(s) | 373, 987 |
| BciVI | GTATCC | 2 cut(s) | 263, 829 |
| BcnI | CCSGG | 1 cut(s) | 563 |
| BcoDI | GTCTC | 2 cut(s) | 652, 973 |
| BfrI | CTTAAG | 1 cut(s) | 932 |
| BfuI | GTATCC | 2 cut(s) | 263, 829 |
| BisI | GCNGC | 2 cut(s) | 396, 953 |
| BlsI | GCNGC | 2 cut(s) | 397, 954 |
| Bme1390I | CCNGG | 3 cut(s) | 373, 563, 987 |
| Bme18I | GGWCC | 1 cut(s) | 698 |
| BmgT120I | GGNCC | 1 cut(s) | 698 |
| BmiI | GGNNCC | 1 cut(s) | 1200 |
| BmrFI | CCNGG | 3 cut(s) | 373, 563, 987 |
| BmrI | ACTGGG | 1 cut(s) | 237 |
| BmsI | GCATC | 3 cut(s) | 832, 854, 1081 |
| BmuI | ACTGGG | 1 cut(s) | 237 |
| BpiI | GAAGAC | 1 cut(s) | 1218 |
| BpmI | CTGGAG | 1 cut(s) | 714 |
| BpuEI | CTTGAG | 2 cut(s) | 203, 908 |
| BpuMI | CCSGG | 1 cut(s) | 563 |
| BsaI | GGTCTC | 1 cut(s) | 652 |
| BsaJI | CCNNGG | 3 cut(s) | 371, 735, 986 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 736, 737 |
| Bse118I | RCCGGY | 1 cut(s) | 1155 |
| Bse1I | ACTGG | 1 cut(s) | 243 |
| Bse3DI | GCAATG | 1 cut(s) | 678 |
| BseBI | CCWGG | 2 cut(s) | 373, 987 |
| BseDI | CCNNGG | 3 cut(s) | 371, 735, 986 |
| BseGI | GGATG | 6 cut(s) | 367, 525, 583, 845, 982, 1072 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 736, 737 |
| BseMI | GCAATG | 1 cut(s) | 678 |
| BseMII | CTCAG | 2 cut(s) | 23, 390 |
| BseNI | ACTGG | 1 cut(s) | 243 |
| BseRI | GAGGAG | 2 cut(s) | 428, 1233 |
| BseSI | GKGCMC | 1 cut(s) | 966 |
| BseXI | GCAGC | 1 cut(s) | 407 |
| BshFI | GGCC | 2 cut(s) | 832, 1155 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 966 |
| BsiSI | CCGG | 4 cut(s) | 563, 833, 1156, 1184 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 736, 737 |
| BsmAI | GTCTC | 2 cut(s) | 652, 973 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsmI | GAATGC | 2 cut(s) | 673, 901 |
| BsnI | GGCC | 2 cut(s) | 832, 1155 |
| Bso31I | GGTCTC | 1 cut(s) | 652 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 966 |
| Bsp143I | GATC | 3 cut(s) | 238, 471, 1128 |
| BspACI | CCGC | 2 cut(s) | 722, 953 |
| BspANI | GGCC | 2 cut(s) | 832, 1155 |
| BspCNI | CTCAG | 2 cut(s) | 24, 391 |
| BspHI | TCATGA | 1 cut(s) | 874 |
| BspLI | GGNNCC | 1 cut(s) | 1200 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspTI | CTTAAG | 1 cut(s) | 932 |
| BspTNI | GGTCTC | 1 cut(s) | 652 |
| BsrDI | GCAATG | 1 cut(s) | 678 |
| BsrFI | RCCGGY | 1 cut(s) | 1155 |
| BsrI | ACTGG | 1 cut(s) | 243 |
| BssAI | RCCGGY | 1 cut(s) | 1155 |
| BssECI | CCNNGG | 3 cut(s) | 371, 735, 986 |
| BssMI | GATC | 3 cut(s) | 238, 471, 1128 |
| BssT1I | CCWWGG | 1 cut(s) | 735 |
| Bst2UI | CCWGG | 2 cut(s) | 373, 987 |
| Bst4CI | ACNGT | 3 cut(s) | 635, 1027, 1049 |
| Bst6I | CTCTTC | 3 cut(s) | 50, 339, 413 |
| BstAFI | CTTAAG | 1 cut(s) | 932 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 961 |
| BstDEI | CTNAG | 5 cut(s) | 32, 399, 884, 1203, 1290 |
| BstF5I | GGATG | 6 cut(s) | 367, 525, 583, 845, 982, 1072 |
| BstKTI | GATC | 3 cut(s) | 241, 474, 1131 |
| BstMAI | GTCTC | 2 cut(s) | 652, 973 |
| BstMBI | GATC | 3 cut(s) | 238, 471, 1128 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 961 |
| BstNI | CCWGG | 2 cut(s) | 373, 987 |
| BstSCI | CCNGG | 3 cut(s) | 371, 561, 985 |
| BstSLI | GKGCMC | 1 cut(s) | 966 |
| BstV1I | GCAGC | 1 cut(s) | 407 |
| BstV2I | GAAGAC | 1 cut(s) | 1218 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1277 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| BsuI | GTATCC | 2 cut(s) | 263, 829 |
| BsuRI | GGCC | 2 cut(s) | 832, 1155 |
| BtsCI | GGATG | 6 cut(s) | 367, 525, 583, 845, 982, 1072 |
| BtsI | GCAGTG | 1 cut(s) | 1131 |
| BtsIMutI | CAGTG | 3 cut(s) | 250, 640, 1131 |
| CaiI | CAGNNNCTG | 2 cut(s) | 249, 790 |
| CciI | TCATGA | 1 cut(s) | 874 |
| Cfr10I | RCCGGY | 1 cut(s) | 1155 |
| Cfr13I | GGNCC | 1 cut(s) | 698 |
| Csp6I | GTAC | 3 cut(s) | 79, 296, 1023 |
| CviAII | CATG | 3 cut(s) | 139, 301, 875 |
| CviQI | GTAC | 3 cut(s) | 79, 296, 1023 |
| DdeI | CTNAG | 5 cut(s) | 32, 399, 884, 1203, 1290 |
| DpnI | GATC | 3 cut(s) | 240, 473, 1130 |
| DpnII | GATC | 3 cut(s) | 238, 471, 1128 |
| DraI | TTTAAA | 1 cut(s) | 379 |
| EaeI | YGGCCR | 2 cut(s) | 830, 1153 |
| Eam1104I | CTCTTC | 3 cut(s) | 50, 339, 413 |
| EarI | CTCTTC | 3 cut(s) | 50, 339, 413 |
| Eco130I | CCWWGG | 1 cut(s) | 735 |
| Eco31I | GGTCTC | 1 cut(s) | 652 |
| Eco47I | GGWCC | 1 cut(s) | 698 |
| Eco57I | CTGAAG | 1 cut(s) | 255 |
| EcoRII | CCWGG | 2 cut(s) | 371, 985 |
| EcoT14I | CCWWGG | 1 cut(s) | 735 |
| EcoT22I | ATGCAT | 1 cut(s) | 847 |
| ErhI | CCWWGG | 1 cut(s) | 735 |
| FaeI | CATG | 3 cut(s) | 142, 304, 878 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 29, 61 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FatI | CATG | 3 cut(s) | 138, 300, 874 |
| FauI | CCCGC | 1 cut(s) | 729 |
| FblI | GTMKAC | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 2 cut(s) | 396, 953 |
| FokI | GGATG | 6 cut(s) | 354, 532, 590, 832, 969, 1059 |
| Fsp4HI | GCNGC | 2 cut(s) | 396, 953 |
| GluI | GCNGC | 2 cut(s) | 396, 953 |
| GsuI | CTGGAG | 1 cut(s) | 714 |
| HaeIII | GGCC | 2 cut(s) | 832, 1155 |
| HapII | CCGG | 4 cut(s) | 563, 833, 1156, 1184 |
| Hin1II | CATG | 3 cut(s) | 142, 304, 878 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HinfI | GANTC | 5 cut(s) | 155, 167, 571, 1055, 1118 |
| HpaII | CCGG | 4 cut(s) | 563, 833, 1156, 1184 |
| HphI | GGTGA | 3 cut(s) | 368, 650, 795 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 284, 631, 964 |
| Hpy188I | TCNGA | 3 cut(s) | 504, 786, 850 |
| Hpy188III | TCNNGA | 6 cut(s) | 220, 475, 575, 693, 875, 1132 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 284, 631, 964 |
| HpyAV | CCTTC | 2 cut(s) | 298, 741 |
| HpyCH4III | ACNGT | 3 cut(s) | 635, 1027, 1049 |
| HpyCH4V | TGCA | 6 cut(s) | 228, 556, 661, 671, 845, 964 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 961 |
| HpyF3I | CTNAG | 5 cut(s) | 32, 399, 884, 1203, 1290 |
| Hsp92II | CATG | 3 cut(s) | 142, 304, 878 |
| Kzo9I | GATC | 3 cut(s) | 238, 471, 1128 |
| Lsp1109I | GCAGC | 1 cut(s) | 407 |
| LweI | GCATC | 3 cut(s) | 832, 854, 1081 |
| MaeIII | GTNAC | 2 cut(s) | 3, 595 |
| MalI | GATC | 3 cut(s) | 240, 473, 1130 |
| MboI | GATC | 3 cut(s) | 238, 471, 1128 |
| MfeI | CAATTG | 1 cut(s) | 711 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MhlI | GDGCHC | 2 cut(s) | 180, 966 |
| MluCI | AATT | 7 cut(s) | 58, 287, 380, 467, 507, 711, 1029 |
| MlyI | GAGTC | 4 cut(s) | 149, 161, 1064, 1127 |
| MmeI | TCCRAC | 3 cut(s) | 144, 725, 1221 |
| Mph1103I | ATGCAT | 1 cut(s) | 847 |
| MseI | TTAA | 9 cut(s) | 129, 201, 213, 378, 749, 773, 933, 1008, 1035 |
| MslI | CAYNNNNRTG | 1 cut(s) | 826 |
| MspA1I | CMGCKG | 1 cut(s) | 398 |
| MspCI | CTTAAG | 1 cut(s) | 932 |
| MspI | CCGG | 4 cut(s) | 563, 833, 1156, 1184 |
| MspR9I | CCNGG | 3 cut(s) | 373, 563, 987 |
| MunI | CAATTG | 1 cut(s) | 711 |
| Mva1269I | GAATGC | 2 cut(s) | 673, 901 |
| MvaI | CCWGG | 2 cut(s) | 373, 987 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 961 |
| NciI | CCSGG | 1 cut(s) | 563 |
| NdeII | GATC | 3 cut(s) | 238, 471, 1128 |
| NlaIII | CATG | 3 cut(s) | 142, 304, 878 |
| NlaIV | GGNNCC | 1 cut(s) | 1200 |
| NmuCI | GTSAC | 1 cut(s) | 595 |
| NsiI | ATGCAT | 1 cut(s) | 847 |
| PagI | TCATGA | 1 cut(s) | 874 |
| PctI | GAATGC | 2 cut(s) | 673, 901 |
| PfeI | GAWTC | 1 cut(s) | 571 |
| PkrI | GCNGC | 2 cut(s) | 397, 954 |
| PleI | GAGTC | 4 cut(s) | 149, 161, 1063, 1126 |
| PpsI | GAGTC | 4 cut(s) | 149, 161, 1063, 1126 |
| Psp6I | CCWGG | 2 cut(s) | 371, 985 |
| PspGI | CCWGG | 2 cut(s) | 371, 985 |
| PspN4I | GGNNCC | 1 cut(s) | 1200 |
| PspPI | GGNCC | 1 cut(s) | 698 |
| PstNI | CAGNNNCTG | 2 cut(s) | 249, 790 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| PvuII | CAGCTG | 1 cut(s) | 398 |
| RsaI | GTAC | 3 cut(s) | 80, 297, 1024 |
| RsaNI | GTAC | 3 cut(s) | 79, 296, 1023 |
| RseI | CAYNNNNRTG | 1 cut(s) | 826 |
| SaqAI | TTAA | 9 cut(s) | 129, 201, 213, 378, 749, 773, 933, 1008, 1035 |
| SatI | GCNGC | 2 cut(s) | 396, 953 |
| Sau3AI | GATC | 3 cut(s) | 238, 471, 1128 |
| Sau96I | GGNCC | 1 cut(s) | 698 |
| SchI | GAGTC | 4 cut(s) | 149, 161, 1064, 1127 |
| ScrFI | CCNGG | 3 cut(s) | 373, 563, 987 |
| SduI | GDGCHC | 2 cut(s) | 180, 966 |
| SfaNI | GCATC | 3 cut(s) | 832, 854, 1081 |
| SinI | GGWCC | 1 cut(s) | 698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 826 |
| SmlI | CTYRAG | 3 cut(s) | 218, 923, 932 |
| SmoI | CTYRAG | 3 cut(s) | 218, 923, 932 |
| Sse9I | AATT | 7 cut(s) | 58, 287, 380, 467, 507, 711, 1029 |
| SsiI | CCGC | 2 cut(s) | 722, 953 |
| StyD4I | CCNGG | 3 cut(s) | 371, 561, 985 |
| StyI | CCWWGG | 1 cut(s) | 735 |
| TaaI | ACNGT | 3 cut(s) | 635, 1027, 1049 |
| TaqI | TCGA | 1 cut(s) | 183 |
| TasI | AATT | 7 cut(s) | 58, 287, 380, 467, 507, 711, 1029 |
| TauI | GCSGC | 1 cut(s) | 955 |
| TfiI | GAWTC | 1 cut(s) | 571 |
| Tru1I | TTAA | 9 cut(s) | 129, 201, 213, 378, 749, 773, 933, 1008, 1035 |
| Tru9I | TTAA | 9 cut(s) | 129, 201, 213, 378, 749, 773, 933, 1008, 1035 |
| TscAI | CASTG | 3 cut(s) | 250, 640, 1131 |
| TseFI | GTSAC | 1 cut(s) | 595 |
| TseI | GCWGC | 1 cut(s) | 395 |
| Tsp45I | GTSAC | 1 cut(s) | 595 |
| TspDTI | ATGAA | 6 cut(s) | 155, 279, 317, 689, 863, 1193 |
| TspRI | CASTG | 3 cut(s) | 250, 640, 1131 |
| Vha464I | CTTAAG | 1 cut(s) | 932 |
| VneI | GTGCAC | 1 cut(s) | 962 |
| VpaK11BI | GGWCC | 1 cut(s) | 698 |
| XapI | RAATTY | 1 cut(s) | 58 |
| XmiI | GTMKAC | 1 cut(s) | 135 |
| Zsp2I | ATGCAT | 1 cut(s) | 847 |