Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 518 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 396 |
| AccB1I | GGYRCC | 2 cut(s) | 251, 416 |
| AciI | CCGC | 1 cut(s) | 324 |
| AclWI | GGATC | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 377 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AfaI | GTAC | 1 cut(s) | 548 |
| AflII | CTTAAG | 1 cut(s) | 122 |
| AflIII | ACRYGT | 1 cut(s) | 543 |
| AgsI | TTSAA | 3 cut(s) | 350, 395, 426 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 5 cut(s) | 143, 215, 277, 313, 562 |
| AluI | AGCT | 5 cut(s) | 143, 215, 277, 313, 562 |
| Alw26I | GTCTC | 1 cut(s) | 531 |
| AlwI | GGATC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 3 cut(s) | 176, 281, 472 |
| ApoI | RAATTY | 1 cut(s) | 377 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 85, 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 595 |
| BanI | GGYRCC | 2 cut(s) | 251, 416 |
| BbvI | GCAGC | 3 cut(s) | 163, 293, 484 |
| BccI | CCATC | 2 cut(s) | 64, 232 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BcoDI | GTCTC | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BfrI | CTTAAG | 1 cut(s) | 122 |
| BisI | GCNGC | 3 cut(s) | 177, 282, 473 |
| BlsI | GCNGC | 3 cut(s) | 178, 283, 474 |
| Bme1390I | CCNGG | 1 cut(s) | 450 |
| Bme18I | GGWCC | 1 cut(s) | 595 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 3 cut(s) | 201, 253, 418 |
| BmrFI | CCNGG | 1 cut(s) | 450 |
| BsaAI | YACGTR | 1 cut(s) | 546 |
| BsaJI | CCNNGG | 1 cut(s) | 412 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 1 cut(s) | 412 |
| BseRI | GAGGAG | 1 cut(s) | 38 |
| BseXI | GCAGC | 3 cut(s) | 163, 293, 484 |
| BshNI | GGYRCC | 2 cut(s) | 251, 416 |
| BsmAI | GTCTC | 1 cut(s) | 531 |
| BsmBI | CGTCTC | 1 cut(s) | 531 |
| Bsp143I | GATC | 2 cut(s) | 40, 118 |
| Bsp19I | CCATGG | 1 cut(s) | 412 |
| BspACI | CCGC | 1 cut(s) | 324 |
| BspLI | GGNNCC | 3 cut(s) | 201, 253, 418 |
| BspPI | GGATC | 1 cut(s) | 126 |
| BspT107I | GGYRCC | 2 cut(s) | 251, 416 |
| BspTI | CTTAAG | 1 cut(s) | 122 |
| BssECI | CCNNGG | 1 cut(s) | 412 |
| BssMI | GATC | 2 cut(s) | 40, 118 |
| BssT1I | CCWWGG | 1 cut(s) | 412 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 1 cut(s) | 97 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstAFI | CTTAAG | 1 cut(s) | 122 |
| BstBAI | YACGTR | 1 cut(s) | 546 |
| BstC8I | GCNNGC | 2 cut(s) | 141, 279 |
| BstDEI | CTNAG | 1 cut(s) | 327 |
| BstDSI | CCRYGG | 1 cut(s) | 412 |
| BstKTI | GATC | 2 cut(s) | 43, 121 |
| BstMAI | GTCTC | 1 cut(s) | 531 |
| BstMBI | GATC | 2 cut(s) | 40, 118 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 149, 274 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstSCI | CCNGG | 1 cut(s) | 448 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 3 cut(s) | 163, 293, 484 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 314 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BtgI | CCRYGG | 1 cut(s) | 412 |
| Cac8I | GCNNGC | 2 cut(s) | 141, 279 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| Csp6I | GTAC | 1 cut(s) | 547 |
| CviAII | CATG | 3 cut(s) | 366, 413, 466 |
| CviJI | RGCY | 9 cut(s) | 30, 143, 215, 277, 313, 436, 475, 554, 562 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 143, 215, 277, 313, 436, 475, 554, 562 |
| CviQI | GTAC | 1 cut(s) | 547 |
| DdeI | CTNAG | 1 cut(s) | 327 |
| DpnI | GATC | 2 cut(s) | 42, 120 |
| DpnII | GATC | 2 cut(s) | 40, 118 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 396 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 1 cut(s) | 412 |
| Eco47I | GGWCC | 1 cut(s) | 595 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 412 |
| ErhI | CCWWGG | 1 cut(s) | 412 |
| Esp3I | CGTCTC | 1 cut(s) | 531 |
| FaeI | CATG | 3 cut(s) | 369, 416, 469 |
| FatI | CATG | 3 cut(s) | 365, 412, 465 |
| FauI | CCCGC | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 282, 473 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 282, 473 |
| GluI | GCNGC | 3 cut(s) | 177, 282, 473 |
| Hin1II | CATG | 3 cut(s) | 369, 416, 469 |
| HindIII | AAGCTT | 1 cut(s) | 311 |
| HinfI | GANTC | 1 cut(s) | 346 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 1 cut(s) | 263 |
| Hpy188I | TCNGA | 2 cut(s) | 81, 389 |
| Hpy188III | TCNNGA | 2 cut(s) | 307, 589 |
| Hpy8I | GTNNAC | 1 cut(s) | 263 |
| Hpy99I | CGWCG | 1 cut(s) | 41 |
| HpyAV | CCTTC | 2 cut(s) | 389, 586 |
| HpyCH4III | ACNGT | 1 cut(s) | 97 |
| HpyCH4IV | ACGT | 1 cut(s) | 545 |
| HpyCH4V | TGCA | 6 cut(s) | 111, 139, 152, 246, 404, 527 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 149, 274 |
| HpyF3I | CTNAG | 1 cut(s) | 327 |
| HpySE526I | ACGT | 1 cut(s) | 545 |
| Hsp92II | CATG | 3 cut(s) | 369, 416, 469 |
| Kzo9I | GATC | 2 cut(s) | 40, 118 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 293, 484 |
| MaeII | ACGT | 1 cut(s) | 545 |
| MalI | GATC | 2 cut(s) | 42, 120 |
| MboI | GATC | 2 cut(s) | 40, 118 |
| MboII | GAAGA | 3 cut(s) | 68, 247, 479 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 5 cut(s) | 100, 129, 300, 377, 510 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 3 cut(s) | 16, 238, 373 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MseI | TTAA | 5 cut(s) | 99, 123, 333, 342, 375 |
| MslI | CAYNNNNRTG | 1 cut(s) | 497 |
| MspCI | CTTAAG | 1 cut(s) | 122 |
| MspR9I | CCNGG | 1 cut(s) | 450 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 149, 274 |
| NcoI | CCATGG | 1 cut(s) | 412 |
| NdeII | GATC | 2 cut(s) | 40, 118 |
| NlaIII | CATG | 3 cut(s) | 369, 416, 469 |
| NlaIV | GGNNCC | 3 cut(s) | 201, 253, 418 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PfeI | GAWTC | 1 cut(s) | 346 |
| PfoI | TCCNGGA | 1 cut(s) | 448 |
| PkrI | GCNGC | 3 cut(s) | 178, 283, 474 |
| Ppu21I | YACGTR | 1 cut(s) | 546 |
| PsiI | TTATAA | 1 cut(s) | 518 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 3 cut(s) | 201, 253, 418 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 1 cut(s) | 548 |
| RsaNI | GTAC | 1 cut(s) | 547 |
| RseI | CAYNNNNRTG | 1 cut(s) | 497 |
| SaqAI | TTAA | 5 cut(s) | 99, 123, 333, 342, 375 |
| SatI | GCNGC | 3 cut(s) | 177, 282, 473 |
| Sau3AI | GATC | 2 cut(s) | 40, 118 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| ScrFI | CCNGG | 1 cut(s) | 450 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SinI | GGWCC | 1 cut(s) | 595 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 497 |
| SmlI | CTYRAG | 1 cut(s) | 122 |
| SmoI | CTYRAG | 1 cut(s) | 122 |
| Sse9I | AATT | 5 cut(s) | 100, 129, 300, 377, 510 |
| SsiI | CCGC | 1 cut(s) | 324 |
| SspI | AATATT | 1 cut(s) | 85 |
| StyD4I | CCNGG | 1 cut(s) | 448 |
| StyI | CCWWGG | 1 cut(s) | 412 |
| TaaI | ACNGT | 1 cut(s) | 97 |
| TaiI | ACGT | 1 cut(s) | 548 |
| TaqI | TCGA | 4 cut(s) | 39, 92, 145, 298 |
| TasI | AATT | 5 cut(s) | 100, 129, 300, 377, 510 |
| TfiI | GAWTC | 1 cut(s) | 346 |
| Tru1I | TTAA | 5 cut(s) | 99, 123, 333, 342, 375 |
| Tru9I | TTAA | 5 cut(s) | 99, 123, 333, 342, 375 |
| TseI | GCWGC | 3 cut(s) | 176, 281, 472 |
| TspDTI | ATGAA | 1 cut(s) | 482 |
| Vha464I | CTTAAG | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 595 |
| XapI | RAATTY | 1 cut(s) | 377 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |