Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

15557518 .. 15558469

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGGCTCGTTTGGGTACCTAGGCCTGTGTTTCTATTGCTGTTCCTAGCTATTGTTCTTGTCCTGAGCTCTTTGTTTCAGTCGATTTCGAAACAAAAAAATCTTCAATTCTCATTGAATCCTCTATTCGTGTTTTCGCTATGTAACATCATAATCTTTGCCATCATTGTTGGAGATCATCGGCCACCTACCGAGGAAGTTGACAGCATCTTACCATTCCTAGCAGGTTCAGCAGAGGATGCAACTTATGATATTGAGGATGATGGTAGCAACAAGCACTGCAATATGGATGGTCATGTTAATGGCAGTGAGGATGTTGATGATCAAGTTGATGAAAGTGGAGAAGAAGATGGAGAATATGATTCTGACGGTTACAATGAAGATGACGACGACAATGGTAGCAATGATGAAATTGGCTGGGAAGACACAGATGAATCTGATGATAACTTGGAGACGAGAGTTGAAAACTTCATTGATAGGGTTTACAAGGGATGGCGAGAAGAGAGGCTAAGGGATAGCCTATGCAATCCCCTGCAATTTTTTGGTTACATCAATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

187

Amino Acids

21.28

Weight (kDa)

4.05

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	182
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	107, 118, 464
AluBI	AGCT	2 cut(s)	50, 69
AluI	AGCT	2 cut(s)	50, 69
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	23, 182
Asp718I	GGTACC	1 cut(s)	16
AspA2I	CCTAGG	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	71
BccI	CCATC	5 cut(s)	170, 257, 284, 344, 486
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	21, 47, 221
BfuAI	ACCTGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	216, 229
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	2 cut(s)	65, 509
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	20, 192
Bse3DI	GCAATG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	20, 192
BseGI	GGATG	5 cut(s)	244, 265, 295, 319, 497
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	25, 184
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	25, 184
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	175, 322
BspANI	GGCC	2 cut(s)	25, 184
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	20, 192
BssMI	GATC	2 cut(s)	175, 322
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	65, 509
BstF5I	GGATG	5 cut(s)	244, 265, 295, 319, 497
BstKTI	GATC	2 cut(s)	178, 325
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	175, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	25, 184
BtsCI	GGATG	5 cut(s)	244, 265, 295, 319, 497
BtsI	GCAGTG	2 cut(s)	277, 313
BtsIMutI	CAGTG	2 cut(s)	277, 313
BveI	ACCTGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	8 cut(s)	7, 25, 50, 69, 184, 417, 508, 519
CviKI_1	RGCY	8 cut(s)	7, 25, 50, 69, 184, 417, 508, 519
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	65, 509
DpnI	GATC	2 cut(s)	177, 324
DpnII	GATC	2 cut(s)	175, 322
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	1 cut(s)	299
FaiI	YATR	8 cut(s)	142, 152, 249, 287, 297, 360, 523, 562
FatI	CATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	5 cut(s)	251, 272, 302, 326, 504
FriOI	GRGCYC	1 cut(s)	71
FspBI	CTAG	3 cut(s)	21, 47, 221
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	25, 184
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	118, 362, 434
Hpy166II	GTNNAC	2 cut(s)	202, 484
Hpy188I	TCNGA	2 cut(s)	367, 439
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	202, 484
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	242, 282, 525, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	2 cut(s)	65, 509
Hsp92II	CATG	1 cut(s)	299
KpnI	GGTACC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	175, 322
LpnPI	CCDG	5 cut(s)	39, 77, 210, 403, 545
LweI	GCATC	2 cut(s)	216, 229
MaeI	CTAG	3 cut(s)	21, 47, 221
MaeIII	GTNAC	3 cut(s)	143, 371, 545
MalI	GATC	2 cut(s)	177, 324
MboI	GATC	2 cut(s)	175, 322
MboII	GAAGA	6 cut(s)	95, 356, 359, 392, 434, 512
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	107, 411, 536
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	132, 187, 229, 250, 304, 498
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeII	GATC	2 cut(s)	175, 322
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	118, 362, 434
PsiI	TTATAA	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	175, 322
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	22, 52, 71, 190, 229
SfaNI	GCATC	2 cut(s)	216, 229
SfuI	TTCGAA	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	107, 411, 536
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	21, 47, 221
SstI	GAGCTC	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	83, 89
TasI	AATT	3 cut(s)	107, 411, 536
TfiI	GAWTC	3 cut(s)	118, 362, 434
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	284, 313
TspDTI	ATGAA	5 cut(s)	348, 393, 423, 447, 460
TspRI	CASTG	2 cut(s)	284, 313
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 47, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.