Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 265 - 385 | 8.5e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1193, 1215 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 398, 776 |
| AccI | GTMKAC | 3 cut(s) | 280, 658, 1000 |
| AcsI | RAATTY | 5 cut(s) | 329, 707, 983, 1045, 1252 |
| AfaI | GTAC | 3 cut(s) | 487, 865, 1241 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 398, 776 |
| AflIII | ACRYGT | 1 cut(s) | 1090 |
| AgeI | ACCGGT | 1 cut(s) | 31 |
| AjiI | CACGTC | 2 cut(s) | 457, 835 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 283, 315, 661, 693 |
| AleI | CACNNNNGTG | 2 cut(s) | 265, 643 |
| AoxI | GGCC | 2 cut(s) | 219, 597 |
| ApeKI | GCWGC | 9 cut(s) | 59, 126, 129, 437, 440, 497, 815, 818, 875 |
| ApoI | RAATTY | 5 cut(s) | 329, 707, 983, 1045, 1252 |
| AsiGI | ACCGGT | 1 cut(s) | 31 |
| BanII | GRGCYC | 1 cut(s) | 12 |
| BauI | CACGAG | 1 cut(s) | 11 |
| BbvI | GCAGC | 9 cut(s) | 71, 116, 138, 424, 427, 509, 802, 805, 887 |
| BccI | CCATC | 6 cut(s) | 375, 416, 476, 753, 794, 854 |
| BclI | TGATCA | 2 cut(s) | 895, 1104 |
| BfaI | CTAG | 1 cut(s) | 1119 |
| BfmI | CTRYAG | 1 cut(s) | 43 |
| BisI | GCNGC | 9 cut(s) | 60, 127, 130, 438, 441, 498, 816, 819, 876 |
| BlsI | GCNGC | 9 cut(s) | 61, 128, 131, 439, 442, 499, 817, 820, 877 |
| BmgBI | CACGTC | 2 cut(s) | 457, 835 |
| BmiI | GGNNCC | 3 cut(s) | 21, 390, 768 |
| BmsI | GCATC | 4 cut(s) | 295, 673, 1114, 1211 |
| BpmI | CTGGAG | 2 cut(s) | 375, 753 |
| Bpu10I | CCTNAGC | 1 cut(s) | 118 |
| BsaJI | CCNNGG | 3 cut(s) | 362, 740, 1017 |
| BsaWI | WCCGGW | 3 cut(s) | 31, 252, 630 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 398, 776 |
| Bse118I | RCCGGY | 1 cut(s) | 31 |
| Bse3DI | GCAATG | 1 cut(s) | 523 |
| BseDI | CCNNGG | 3 cut(s) | 362, 740, 1017 |
| BseGI | GGATG | 5 cut(s) | 286, 386, 664, 764, 1226 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 398, 776 |
| BseMI | GCAATG | 1 cut(s) | 523 |
| BseRI | GAGGAG | 1 cut(s) | 12 |
| BseXI | GCAGC | 9 cut(s) | 71, 116, 138, 424, 427, 509, 802, 805, 887 |
| BsgI | GTGCAG | 1 cut(s) | 12 |
| BshFI | GGCC | 2 cut(s) | 221, 599 |
| BshTI | ACCGGT | 1 cut(s) | 31 |
| BsiSI | CCGG | 3 cut(s) | 32, 253, 631 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 398, 776 |
| BsmI | GAATGC | 2 cut(s) | 262, 640 |
| BsnI | GGCC | 2 cut(s) | 221, 599 |
| Bsp1286I | GDGCHC | 1 cut(s) | 12 |
| Bsp143I | GATC | 3 cut(s) | 895, 1104, 1204 |
| BspANI | GGCC | 2 cut(s) | 221, 599 |
| BspLI | GGNNCC | 3 cut(s) | 21, 390, 768 |
| BsrDI | GCAATG | 1 cut(s) | 523 |
| BsrFI | RCCGGY | 1 cut(s) | 31 |
| BssAI | RCCGGY | 1 cut(s) | 31 |
| BssECI | CCNNGG | 3 cut(s) | 362, 740, 1017 |
| BssMI | GATC | 3 cut(s) | 895, 1104, 1204 |
| BssSI | CACGAG | 1 cut(s) | 11 |
| BssT1I | CCWWGG | 3 cut(s) | 362, 740, 1017 |
| Bst2BI | CACGAG | 1 cut(s) | 11 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 527 |
| BstC8I | GCNNGC | 2 cut(s) | 72, 1014 |
| BstDEI | CTNAG | 1 cut(s) | 118 |
| BstF5I | GGATG | 5 cut(s) | 286, 386, 664, 764, 1226 |
| BstKTI | GATC | 3 cut(s) | 898, 1107, 1207 |
| BstMBI | GATC | 3 cut(s) | 895, 1104, 1204 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 101, 123 |
| BstNSI | RCATGY | 3 cut(s) | 74, 1016, 1094 |
| BstSFI | CTRYAG | 1 cut(s) | 43 |
| BstV1I | GCAGC | 9 cut(s) | 71, 116, 138, 424, 427, 509, 802, 805, 887 |
| BsuRI | GGCC | 2 cut(s) | 221, 599 |
| BtgZI | GCGATG | 2 cut(s) | 435, 813 |
| BtrI | CACGTC | 2 cut(s) | 457, 835 |
| BtsCI | GGATG | 5 cut(s) | 286, 386, 664, 764, 1226 |
| Cac8I | GCNNGC | 2 cut(s) | 72, 1014 |
| Cfr10I | RCCGGY | 1 cut(s) | 31 |
| Csp6I | GTAC | 3 cut(s) | 486, 864, 1240 |
| CspAI | ACCGGT | 1 cut(s) | 31 |
| CviAII | CATG | 9 cut(s) | 71, 114, 479, 857, 1013, 1057, 1091, 1102, 1185 |
| CviQI | GTAC | 3 cut(s) | 486, 864, 1240 |
| DdeI | CTNAG | 1 cut(s) | 118 |
| DpnI | GATC | 3 cut(s) | 897, 1106, 1206 |
| DpnII | GATC | 3 cut(s) | 895, 1104, 1204 |
| Eco130I | CCWWGG | 3 cut(s) | 362, 740, 1017 |
| Eco147I | AGGCCT | 2 cut(s) | 221, 599 |
| Eco24I | GRGCYC | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 3 cut(s) | 362, 740, 1017 |
| EcoT38I | GRGCYC | 1 cut(s) | 12 |
| ErhI | CCWWGG | 3 cut(s) | 362, 740, 1017 |
| FaeI | CATG | 9 cut(s) | 74, 117, 482, 860, 1016, 1060, 1094, 1105, 1188 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 283, 315, 661, 693 |
| FatI | CATG | 9 cut(s) | 70, 113, 478, 856, 1012, 1056, 1090, 1101, 1184 |
| FbaI | TGATCA | 2 cut(s) | 895, 1104 |
| FblI | GTMKAC | 3 cut(s) | 280, 658, 1000 |
| Fnu4HI | GCNGC | 9 cut(s) | 60, 127, 130, 438, 441, 498, 816, 819, 876 |
| FokI | GGATG | 5 cut(s) | 273, 393, 651, 771, 1233 |
| FriOI | GRGCYC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 9 cut(s) | 60, 127, 130, 438, 441, 498, 816, 819, 876 |
| FspBI | CTAG | 1 cut(s) | 1119 |
| GluI | GCNGC | 9 cut(s) | 60, 127, 130, 438, 441, 498, 816, 819, 876 |
| GsuI | CTGGAG | 2 cut(s) | 375, 753 |
| HaeIII | GGCC | 2 cut(s) | 221, 599 |
| HapII | CCGG | 3 cut(s) | 32, 253, 631 |
| Hin1II | CATG | 9 cut(s) | 74, 117, 482, 860, 1016, 1060, 1094, 1105, 1188 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HindIII | AAGCTT | 2 cut(s) | 297, 675 |
| HinfI | GANTC | 4 cut(s) | 358, 469, 736, 847 |
| HpaII | CCGG | 3 cut(s) | 32, 253, 631 |
| Hpy166II | GTNNAC | 5 cut(s) | 37, 281, 659, 1001, 1240 |
| Hpy188I | TCNGA | 1 cut(s) | 1109 |
| Hpy188III | TCNNGA | 3 cut(s) | 392, 770, 1202 |
| Hpy8I | GTNNAC | 5 cut(s) | 37, 281, 659, 1001, 1240 |
| Hpy99I | CGWCG | 2 cut(s) | 458, 836 |
| HpyAV | CCTTC | 6 cut(s) | 266, 369, 644, 747, 935, 1066 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 527 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 834 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 260, 370, 638, 748, 967, 1012, 1096 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 101, 123 |
| HpyF3I | CTNAG | 1 cut(s) | 118 |
| HpySE526I | ACGT | 2 cut(s) | 456, 834 |
| Hsp92II | CATG | 9 cut(s) | 74, 117, 482, 860, 1016, 1060, 1094, 1105, 1188 |
| Ksp22I | TGATCA | 2 cut(s) | 895, 1104 |
| Kzo9I | GATC | 3 cut(s) | 895, 1104, 1204 |
| LmnI | GCTCC | 8 cut(s) | 25, 205, 394, 461, 583, 772, 839, 1204 |
| LpnPI | CCDG | 8 cut(s) | 39, 45, 266, 405, 644, 783, 1137, 1215 |
| Lsp1109I | GCAGC | 9 cut(s) | 71, 116, 138, 424, 427, 509, 802, 805, 887 |
| LweI | GCATC | 4 cut(s) | 295, 673, 1114, 1211 |
| MaeI | CTAG | 1 cut(s) | 1119 |
| MaeII | ACGT | 2 cut(s) | 456, 834 |
| MaeIII | GTNAC | 2 cut(s) | 473, 851 |
| MalI | GATC | 3 cut(s) | 897, 1106, 1206 |
| MboI | GATC | 3 cut(s) | 895, 1104, 1204 |
| MboII | GAAGA | 2 cut(s) | 1040, 1076 |
| MfeI | CAATTG | 2 cut(s) | 263, 641 |
| MhlI | GDGCHC | 1 cut(s) | 12 |
| MlyI | GAGTC | 2 cut(s) | 352, 730 |
| MnlI | CCTC | 7 cut(s) | 33, 102, 379, 443, 757, 821, 1079 |
| MseI | TTAA | 8 cut(s) | 213, 224, 323, 591, 602, 701, 1079, 1247 |
| MslI | CAYNNNNRTG | 4 cut(s) | 265, 291, 643, 669 |
| MspA1I | CMGCKG | 1 cut(s) | 129 |
| MspI | CCGG | 3 cut(s) | 32, 253, 631 |
| MunI | CAATTG | 2 cut(s) | 263, 641 |
| Mva1269I | GAATGC | 2 cut(s) | 262, 640 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 101, 123 |
| NdeII | GATC | 3 cut(s) | 895, 1104, 1204 |
| NlaIII | CATG | 9 cut(s) | 74, 117, 482, 860, 1016, 1060, 1094, 1105, 1188 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 390, 768 |
| NspI | RCATGY | 3 cut(s) | 74, 1016, 1094 |
| OliI | CACNNNNGTG | 2 cut(s) | 265, 643 |
| PaeI | GCATGC | 2 cut(s) | 74, 1016 |
| PceI | AGGCCT | 2 cut(s) | 221, 599 |
| PciI | ACATGT | 1 cut(s) | 1090 |
| PctI | GAATGC | 2 cut(s) | 262, 640 |
| PfeI | GAWTC | 2 cut(s) | 469, 847 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 398, 776 |
| PinAI | ACCGGT | 1 cut(s) | 31 |
| PkrI | GCNGC | 9 cut(s) | 61, 128, 131, 439, 442, 499, 817, 820, 877 |
| PleI | GAGTC | 2 cut(s) | 352, 730 |
| PpsI | GAGTC | 2 cut(s) | 352, 730 |
| PscI | ACATGT | 1 cut(s) | 1090 |
| PsiI | TTATAA | 2 cut(s) | 1193, 1215 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 390, 768 |
| PvuII | CAGCTG | 1 cut(s) | 129 |
| RsaI | GTAC | 3 cut(s) | 487, 865, 1241 |
| RsaNI | GTAC | 3 cut(s) | 486, 864, 1240 |
| RseI | CAYNNNNRTG | 4 cut(s) | 265, 291, 643, 669 |
| SaqAI | TTAA | 8 cut(s) | 213, 224, 323, 591, 602, 701, 1079, 1247 |
| SatI | GCNGC | 9 cut(s) | 60, 127, 130, 438, 441, 498, 816, 819, 876 |
| Sau3AI | GATC | 3 cut(s) | 895, 1104, 1204 |
| SchI | GAGTC | 2 cut(s) | 352, 730 |
| SduI | GDGCHC | 1 cut(s) | 12 |
| SfaNI | GCATC | 4 cut(s) | 295, 673, 1114, 1211 |
| SfcI | CTRYAG | 1 cut(s) | 43 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 265, 291, 643, 669 |
| SphI | GCATGC | 2 cut(s) | 74, 1016 |
| SseBI | AGGCCT | 2 cut(s) | 221, 599 |
| SspMI | CTAG | 1 cut(s) | 1119 |
| StuI | AGGCCT | 2 cut(s) | 221, 599 |
| StyI | CCWWGG | 3 cut(s) | 362, 740, 1017 |
| TaaI | ACNGT | 2 cut(s) | 149, 527 |
| TaiI | ACGT | 2 cut(s) | 459, 837 |
| TaqI | TCGA | 1 cut(s) | 1207 |
| TatI | WGTACW | 1 cut(s) | 1239 |
| TfiI | GAWTC | 2 cut(s) | 469, 847 |
| Tru1I | TTAA | 8 cut(s) | 213, 224, 323, 591, 602, 701, 1079, 1247 |
| Tru9I | TTAA | 8 cut(s) | 213, 224, 323, 591, 602, 701, 1079, 1247 |
| TseI | GCWGC | 9 cut(s) | 59, 126, 129, 437, 440, 497, 815, 818, 875 |
| TspDTI | ATGAA | 5 cut(s) | 342, 720, 899, 954, 1045 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 398, 776 |
| XapI | RAATTY | 5 cut(s) | 329, 707, 983, 1045, 1252 |
| XceI | RCATGY | 3 cut(s) | 74, 1016, 1094 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 399, 777 |
| XmiI | GTMKAC | 3 cut(s) | 280, 658, 1000 |
| XspI | CTAG | 1 cut(s) | 1119 |