Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WW | PF00397 | 223 - 251 | 1.8e-08 | WW domain |
| WW | PF00397 | 266 - 292 | 5.7e-08 | WW domain |
| FF | PF01846 | 467 - 516 | 1.8e-16 | FF domain |
| FF | PF01846 | 534 - 584 | 5.8e-14 | FF domain |
| FF | PF01846 | 676 - 731 | 9.7e-08 | FF domain |
| FF_PRPF40A | PF25432 | 739 - 798 | 7.4e-20 | PRPF40A-like, FF domain |
| FF | PF01846 | 812 - 859 | 6.2e-08 | FF domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1159, 2140 |
| AccB1I | GGYRCC | 1 cut(s) | 1042 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 263, 278, 1662, 1813 |
| AccBSI | CCGCTC | 1 cut(s) | 1525 |
| AccI | GTMKAC | 1 cut(s) | 1433 |
| AccII | CGCG | 2 cut(s) | 1959, 2385 |
| AciI | CCGC | 7 cut(s) | 83, 233, 1525, 1585, 1729, 2044, 2992 |
| AclI | AACGTT | 1 cut(s) | 1699 |
| AclWI | GGATC | 6 cut(s) | 1229, 1361, 1470, 1595, 2733, 2911 |
| AcoI | YGGCCR | 2 cut(s) | 3, 407 |
| AcsI | RAATTY | 7 cut(s) | 157, 456, 806, 1243, 1259, 2232, 3041 |
| AcuI | CTGAAG | 5 cut(s) | 603, 905, 1209, 1748, 2135 |
| AcvI | CACGTG | 1 cut(s) | 1607 |
| AfaI | GTAC | 5 cut(s) | 351, 579, 1290, 1820, 2528 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 53, 89, 263, 278, 844, 1036, 1443, 1662, 1813 |
| AflII | CTTAAG | 1 cut(s) | 394 |
| AflIII | ACRYGT | 2 cut(s) | 2383, 2575 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 608 |
| AhlI | ACTAGT | 1 cut(s) | 1058 |
| AjiI | CACGTC | 2 cut(s) | 1913, 2248 |
| AjnI | CCWGG | 3 cut(s) | 271, 1944, 2282 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 213, 245 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 165, 197, 1788, 1820 |
| Alw21I | GWGCWC | 2 cut(s) | 1910, 2552 |
| Alw26I | GTCTC | 2 cut(s) | 1719, 2901 |
| AlwI | GGATC | 6 cut(s) | 1229, 1361, 1470, 1595, 2733, 2911 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2957 |
| AoxI | GGCC | 7 cut(s) | 3, 41, 274, 407, 891, 1467, 1551 |
| ApeKI | GCWGC | 9 cut(s) | 31, 244, 286, 586, 1193, 1217, 1860, 2069, 2910 |
| ApoI | RAATTY | 7 cut(s) | 157, 456, 806, 1243, 1259, 2232, 3041 |
| AseI | ATTAAT | 2 cut(s) | 1335, 1485 |
| AspS9I | GGNCC | 7 cut(s) | 56, 266, 892, 1467, 1552, 2287, 2942 |
| AsuC2I | CCSGG | 1 cut(s) | 895 |
| AsuHPI | GGTGA | 9 cut(s) | 209, 604, 608, 1092, 2263, 2552, 2720, 2981, 3026 |
| AsuII | TTCGAA | 1 cut(s) | 2236 |
| AvaII | GGWCC | 4 cut(s) | 56, 266, 2287, 2942 |
| AxyI | CCTNAGG | 2 cut(s) | 876, 933 |
| BaeGI | GKGCMC | 1 cut(s) | 403 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 948, 981 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 1042 |
| BanII | GRGCYC | 1 cut(s) | 2552 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1272, 1304 |
| BbrPI | CACGTG | 1 cut(s) | 1607 |
| BbsI | GAAGAC | 3 cut(s) | 2754, 2859, 2980 |
| Bbv12I | GWGCWC | 2 cut(s) | 1910, 2552 |
| BbvCI | CCTCAGC | 1 cut(s) | 354 |
| BbvI | GCAGC | 9 cut(s) | 43, 256, 273, 598, 1180, 1204, 1872, 2056, 2922 |
| BceAI | ACGGC | 1 cut(s) | 422 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 20, 54, 108, 142 |
| BciT130I | CCWGG | 3 cut(s) | 273, 1946, 2284 |
| BciVI | GTATCC | 1 cut(s) | 1986 |
| BclI | TGATCA | 2 cut(s) | 2059, 3016 |
| BcnI | CCSGG | 1 cut(s) | 895 |
| BcoDI | GTCTC | 2 cut(s) | 1719, 2901 |
| BcuI | ACTAGT | 1 cut(s) | 1058 |
| BfaI | CTAG | 6 cut(s) | 1059, 1964, 2207, 2360, 2907, 3029 |
| BfmI | CTRYAG | 2 cut(s) | 1218, 2070 |
| BfrI | CTTAAG | 1 cut(s) | 394 |
| BfuAI | ACCTGC | 2 cut(s) | 1159, 2140 |
| BfuI | GTATCC | 1 cut(s) | 1986 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 40 |
| BglII | AGATCT | 2 cut(s) | 260, 2125 |
| BlpI | GCTNAGC | 1 cut(s) | 315 |
| Bme1390I | CCNGG | 4 cut(s) | 273, 895, 1946, 2284 |
| Bme18I | GGWCC | 4 cut(s) | 56, 266, 2287, 2942 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 608 |
| BmgBI | CACGTC | 2 cut(s) | 1913, 2248 |
| BmgT120I | GGNCC | 7 cut(s) | 56, 266, 892, 1467, 1552, 2287, 2942 |
| BmiI | GGNNCC | 3 cut(s) | 1044, 1305, 2288 |
| BmrFI | CCNGG | 4 cut(s) | 273, 895, 1946, 2284 |
| BpiI | GAAGAC | 3 cut(s) | 2754, 2859, 2980 |
| BpmI | CTGGAG | 2 cut(s) | 612, 794 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 315 |
| Bpu14I | TTCGAA | 1 cut(s) | 2236 |
| BpuEI | CTTGAG | 1 cut(s) | 999 |
| BpuMI | CCSGG | 1 cut(s) | 895 |
| BsaAI | YACGTR | 2 cut(s) | 1607, 2578 |
| BsaI | GGTCTC | 2 cut(s) | 1719, 2901 |
| BsaJI | CCNNGG | 6 cut(s) | 87, 277, 404, 528, 1275, 2283 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1788, 1818, 2998, 3028 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 53, 89, 263, 278, 844, 1036, 1443, 1662, 1813 |
| Bse21I | CCTNAGG | 2 cut(s) | 876, 933 |
| Bse3DI | GCAATG | 2 cut(s) | 1341, 3001 |
| BseBI | CCWGG | 3 cut(s) | 273, 1946, 2284 |
| BseDI | CCNNGG | 6 cut(s) | 87, 277, 404, 528, 1275, 2283 |
| BseGI | GGATG | 6 cut(s) | 70, 524, 639, 1652, 2062, 2109 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 53, 89, 263, 278, 844, 1036, 1443, 1662, 1813 |
| BseMI | GCAATG | 2 cut(s) | 1341, 3001 |
| BseMII | CTCAG | 7 cut(s) | 239, 329, 368, 867, 947, 1268, 1653 |
| BseRI | GAGGAG | 8 cut(s) | 60, 198, 1592, 2002, 2384, 2414, 2683, 3038 |
| BseSI | GKGCMC | 1 cut(s) | 403 |
| BseXI | GCAGC | 9 cut(s) | 43, 256, 273, 598, 1180, 1204, 1872, 2056, 2922 |
| BsgI | GTGCAG | 1 cut(s) | 263 |
| Bsh1236I | CGCG | 2 cut(s) | 1959, 2385 |
| BshFI | GGCC | 7 cut(s) | 5, 43, 276, 409, 893, 1469, 1553 |
| BshNI | GGYRCC | 1 cut(s) | 1042 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1910, 2552 |
| BsiSI | CCGG | 1 cut(s) | 895 |
| BslFI | GGGAC | 2 cut(s) | 546, 2300 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 53, 89, 263, 278, 844, 1036, 1443, 1662, 1813 |
| BsmAI | GTCTC | 2 cut(s) | 1719, 2901 |
| BsmFI | GGGAC | 2 cut(s) | 546, 2300 |
| BsmI | GAATGC | 1 cut(s) | 1640 |
| BsnI | GGCC | 7 cut(s) | 5, 43, 276, 409, 893, 1469, 1553 |
| Bso31I | GGTCTC | 2 cut(s) | 1719, 2901 |
| Bsp119I | TTCGAA | 1 cut(s) | 2236 |
| Bsp1286I | GDGCHC | 3 cut(s) | 403, 1910, 2552 |
| Bsp1407I | TGTACA | 1 cut(s) | 1288 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 315 |
| Bsp19I | CCATGG | 2 cut(s) | 87, 277 |
| BspACI | CCGC | 7 cut(s) | 83, 233, 1525, 1585, 1729, 2044, 2992 |
| BspANI | GGCC | 7 cut(s) | 5, 43, 276, 409, 893, 1469, 1553 |
| BspCNI | CTCAG | 7 cut(s) | 238, 328, 367, 868, 946, 1267, 1652 |
| BspFNI | CGCG | 2 cut(s) | 1959, 2385 |
| BspHI | TCATGA | 1 cut(s) | 3019 |
| BspLI | GGNNCC | 3 cut(s) | 1044, 1305, 2288 |
| BspMAI | CTGCAG | 2 cut(s) | 1222, 2074 |
| BspMI | ACCTGC | 2 cut(s) | 1159, 2140 |
| BspPI | GGATC | 6 cut(s) | 1229, 1361, 1470, 1595, 2733, 2911 |
| BspQI | GCTCTTC | 2 cut(s) | 1974, 2196 |
| BspT104I | TTCGAA | 1 cut(s) | 2236 |
| BspT107I | GGYRCC | 1 cut(s) | 1042 |
| BspTI | CTTAAG | 1 cut(s) | 394 |
| BspTNI | GGTCTC | 2 cut(s) | 1719, 2901 |
| BsrBI | CCGCTC | 1 cut(s) | 1525 |
| BsrDI | GCAATG | 2 cut(s) | 1341, 3001 |
| BsrGI | TGTACA | 1 cut(s) | 1288 |
| BssECI | CCNNGG | 6 cut(s) | 87, 277, 404, 528, 1275, 2283 |
| BssT1I | CCWWGG | 2 cut(s) | 87, 277 |
| Bst2UI | CCWGG | 3 cut(s) | 273, 1946, 2284 |
| Bst4CI | ACNGT | 7 cut(s) | 964, 1081, 1204, 1905, 2033, 2498, 2531 |
| Bst6I | CTCTTC | 8 cut(s) | 42, 169, 1968, 1974, 2196, 2538, 2622, 2828 |
| BstAFI | CTTAAG | 1 cut(s) | 394 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 241 |
| BstAUI | TGTACA | 1 cut(s) | 1288 |
| BstBAI | YACGTR | 2 cut(s) | 1607, 2578 |
| BstBI | TTCGAA | 1 cut(s) | 2236 |
| BstC8I | GCNNGC | 5 cut(s) | 510, 637, 1533, 1858, 2074 |
| BstDEI | CTNAG | 8 cut(s) | 225, 315, 354, 876, 933, 1254, 1639, 1888 |
| BstDSI | CCRYGG | 3 cut(s) | 87, 277, 404 |
| BstF5I | GGATG | 6 cut(s) | 70, 524, 639, 1652, 2062, 2109 |
| BstFNI | CGCG | 2 cut(s) | 1959, 2385 |
| BstMAI | GTCTC | 2 cut(s) | 1719, 2901 |
| BstNI | CCWGG | 3 cut(s) | 273, 1946, 2284 |
| BstNSI | RCATGY | 2 cut(s) | 170, 512 |
| BstSCI | CCNGG | 4 cut(s) | 271, 893, 1944, 2282 |
| BstSFI | CTRYAG | 2 cut(s) | 1218, 2070 |
| BstSLI | GKGCMC | 1 cut(s) | 403 |
| BstUI | CGCG | 2 cut(s) | 1959, 2385 |
| BstV1I | GCAGC | 9 cut(s) | 43, 256, 273, 598, 1180, 1204, 1872, 2056, 2922 |
| BstV2I | GAAGAC | 3 cut(s) | 2754, 2859, 2980 |
| BstX2I | RGATCY | 4 cut(s) | 260, 1234, 2125, 2903 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 675 |
| BstYI | RGATCY | 4 cut(s) | 260, 1234, 2125, 2903 |
| Bsu36I | CCTNAGG | 2 cut(s) | 876, 933 |
| BsuI | GTATCC | 1 cut(s) | 1986 |
| BsuRI | GGCC | 7 cut(s) | 5, 43, 276, 409, 893, 1469, 1553 |
| BtgI | CCRYGG | 3 cut(s) | 87, 277, 404 |
| BtgZI | GCGATG | 1 cut(s) | 3063 |
| BtrI | CACGTC | 2 cut(s) | 1913, 2248 |
| BtsCI | GGATG | 6 cut(s) | 70, 524, 639, 1652, 2062, 2109 |
| BtsI | GCAGTG | 1 cut(s) | 2151 |
| BtsIMutI | CAGTG | 8 cut(s) | 246, 591, 770, 1871, 2095, 2151, 2536, 2751 |
| BveI | ACCTGC | 2 cut(s) | 1159, 2140 |
| Cac8I | GCNNGC | 5 cut(s) | 510, 637, 1533, 1858, 2074 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2957 |
| CciI | TCATGA | 1 cut(s) | 3019 |
| Cfr13I | GGNCC | 7 cut(s) | 56, 266, 892, 1467, 1552, 2287, 2942 |
| Csp6I | GTAC | 5 cut(s) | 350, 578, 1289, 1819, 2527 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 604, 639 |
| CviQI | GTAC | 5 cut(s) | 350, 578, 1289, 1819, 2527 |
| DdeI | CTNAG | 8 cut(s) | 225, 315, 354, 876, 933, 1254, 1639, 1888 |
| DraI | TTTAAA | 1 cut(s) | 1417 |
| DriI | GACNNNNNGTC | 1 cut(s) | 608 |
| EaeI | YGGCCR | 2 cut(s) | 3, 407 |
| Eam1104I | CTCTTC | 8 cut(s) | 42, 169, 1968, 1974, 2196, 2538, 2622, 2828 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 608 |
| EarI | CTCTTC | 8 cut(s) | 42, 169, 1968, 1974, 2196, 2538, 2622, 2828 |
| EciI | GGCGGA | 1 cut(s) | 1600 |
| Ecl136II | GAGCTC | 1 cut(s) | 2550 |
| Eco130I | CCWWGG | 2 cut(s) | 87, 277 |
| Eco24I | GRGCYC | 1 cut(s) | 2552 |
| Eco31I | GGTCTC | 2 cut(s) | 1719, 2901 |
| Eco47I | GGWCC | 4 cut(s) | 56, 266, 2287, 2942 |
| Eco53kI | GAGCTC | 1 cut(s) | 2550 |
| Eco57I | CTGAAG | 5 cut(s) | 603, 905, 1209, 1748, 2135 |
| Eco72I | CACGTG | 1 cut(s) | 1607 |
| Eco81I | CCTNAGG | 2 cut(s) | 876, 933 |
| EcoICRI | GAGCTC | 1 cut(s) | 2550 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2287 |
| EcoRII | CCWGG | 3 cut(s) | 271, 1944, 2282 |
| EcoT14I | CCWWGG | 2 cut(s) | 87, 277 |
| EcoT22I | ATGCAT | 2 cut(s) | 790, 1414 |
| EcoT38I | GRGCYC | 1 cut(s) | 2552 |
| ErhI | CCWWGG | 2 cut(s) | 87, 277 |
| FaqI | GGGAC | 2 cut(s) | 546, 2300 |
| FauNDI | CATATG | 1 cut(s) | 2137 |
| FbaI | TGATCA | 2 cut(s) | 2059, 3016 |
| FblI | GTMKAC | 1 cut(s) | 1433 |
| FokI | GGATG | 6 cut(s) | 77, 511, 626, 1639, 2069, 2096 |
| FriOI | GRGCYC | 1 cut(s) | 2552 |
| FspBI | CTAG | 6 cut(s) | 1059, 1964, 2207, 2360, 2907, 3029 |
| GsuI | CTGGAG | 2 cut(s) | 612, 794 |
| HaeIII | GGCC | 7 cut(s) | 5, 43, 276, 409, 893, 1469, 1553 |
| HapII | CCGG | 1 cut(s) | 895 |
| HincII | GTYRAC | 2 cut(s) | 1207, 1647 |
| HindII | GTYRAC | 2 cut(s) | 1207, 1647 |
| HindIII | AAGCTT | 1 cut(s) | 1533 |
| HinfI | GANTC | 7 cut(s) | 476, 664, 857, 1430, 1835, 2783, 2948 |
| HpaI | GTTAAC | 1 cut(s) | 1647 |
| HpaII | CCGG | 1 cut(s) | 895 |
| HphI | GGTGA | 9 cut(s) | 209, 604, 608, 1092, 2263, 2552, 2720, 2981, 3026 |
| Hpy166II | GTNNAC | 6 cut(s) | 269, 599, 1207, 1434, 1647, 2423 |
| Hpy8I | GTNNAC | 6 cut(s) | 269, 599, 1207, 1434, 1647, 2423 |
| HpyCH4III | ACNGT | 7 cut(s) | 964, 1081, 1204, 1905, 2033, 2498, 2531 |
| HpyCH4IV | ACGT | 8 cut(s) | 1606, 1699, 1798, 1912, 2023, 2247, 2425, 2577 |
| HpyF3I | CTNAG | 8 cut(s) | 225, 315, 354, 876, 933, 1254, 1639, 1888 |
| HpySE526I | ACGT | 8 cut(s) | 1606, 1699, 1798, 1912, 2023, 2247, 2425, 2577 |
| Ksp22I | TGATCA | 2 cut(s) | 2059, 3016 |
| KspAI | GTTAAC | 1 cut(s) | 1647 |
| LguI | GCTCTTC | 2 cut(s) | 1974, 2196 |
| LmnI | GCTCC | 5 cut(s) | 73, 631, 1809, 2371, 3025 |
| Lsp1109I | GCAGC | 9 cut(s) | 43, 256, 273, 598, 1180, 1204, 1872, 2056, 2922 |
| MaeI | CTAG | 6 cut(s) | 1059, 1964, 2207, 2360, 2907, 3029 |
| MaeII | ACGT | 8 cut(s) | 1606, 1699, 1798, 1912, 2023, 2247, 2425, 2577 |
| MaeIII | GTNAC | 7 cut(s) | 249, 610, 847, 1156, 1198, 1318, 1841 |
| MbiI | CCGCTC | 1 cut(s) | 1525 |
| MfeI | CAATTG | 3 cut(s) | 503, 1362, 2585 |
| MflI | RGATCY | 4 cut(s) | 260, 1234, 2125, 2903 |
| MhlI | GDGCHC | 3 cut(s) | 403, 1910, 2552 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluI | ACGCGT | 1 cut(s) | 2383 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 470, 1439 |
| MmeI | TCCRAC | 3 cut(s) | 151, 667, 1608 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 2 cut(s) | 790, 1414 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 4 cut(s) | 143, 1475, 2844, 2994 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 1 cut(s) | 394 |
| MspI | CCGG | 1 cut(s) | 895 |
| MspR9I | CCNGG | 4 cut(s) | 273, 895, 1946, 2284 |
| MunI | CAATTG | 3 cut(s) | 503, 1362, 2585 |
| Mva1269I | GAATGC | 1 cut(s) | 1640 |
| MvaI | CCWGG | 3 cut(s) | 273, 1946, 2284 |
| MvnI | CGCG | 2 cut(s) | 1959, 2385 |
| NciI | CCSGG | 1 cut(s) | 895 |
| NcoI | CCATGG | 2 cut(s) | 87, 277 |
| NdeI | CATATG | 1 cut(s) | 2137 |
| NlaIV | GGNNCC | 3 cut(s) | 1044, 1305, 2288 |
| NmuCI | GTSAC | 5 cut(s) | 610, 847, 1198, 1318, 1841 |
| NsiI | ATGCAT | 2 cut(s) | 790, 1414 |
| NspI | RCATGY | 2 cut(s) | 170, 512 |
| NspV | TTCGAA | 1 cut(s) | 2236 |
| PaeI | GCATGC | 1 cut(s) | 512 |
| PagI | TCATGA | 1 cut(s) | 3019 |
| PciSI | GCTCTTC | 2 cut(s) | 1974, 2196 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1909, 2029, 2574 |
| PctI | GAATGC | 1 cut(s) | 1640 |
| PfeI | GAWTC | 5 cut(s) | 664, 857, 1835, 2783, 2948 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 263, 278, 1662, 1813 |
| PfoI | TCCNGGA | 1 cut(s) | 1944 |
| PleI | GAGTC | 2 cut(s) | 470, 1438 |
| PmaCI | CACGTG | 1 cut(s) | 1607 |
| PmlI | CACGTG | 1 cut(s) | 1607 |
| PpsI | GAGTC | 2 cut(s) | 470, 1438 |
| Ppu21I | YACGTR | 2 cut(s) | 1607, 2578 |
| PpuMI | RGGWCCY | 1 cut(s) | 2287 |
| PshBI | ATTAAT | 2 cut(s) | 1335, 1485 |
| Psp124BI | GAGCTC | 1 cut(s) | 2552 |
| Psp1406I | AACGTT | 1 cut(s) | 1699 |
| Psp5II | RGGWCCY | 1 cut(s) | 2287 |
| Psp6I | CCWGG | 3 cut(s) | 271, 1944, 2282 |
| PspCI | CACGTG | 1 cut(s) | 1607 |
| PspGI | CCWGG | 3 cut(s) | 271, 1944, 2282 |
| PspN4I | GGNNCC | 3 cut(s) | 1044, 1305, 2288 |
| PspPI | GGNCC | 7 cut(s) | 56, 266, 892, 1467, 1552, 2287, 2942 |
| PspPPI | RGGWCCY | 1 cut(s) | 2287 |
| PstI | CTGCAG | 2 cut(s) | 1222, 2074 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2957 |
| PsuI | RGATCY | 4 cut(s) | 260, 1234, 2125, 2903 |
| RsaI | GTAC | 5 cut(s) | 351, 579, 1290, 1820, 2528 |
| RsaNI | GTAC | 5 cut(s) | 350, 578, 1289, 1819, 2527 |
| RseI | CAYNNNNRTG | 4 cut(s) | 143, 1475, 2844, 2994 |
| SacI | GAGCTC | 1 cut(s) | 2552 |
| SapI | GCTCTTC | 2 cut(s) | 1974, 2196 |
| Sau96I | GGNCC | 7 cut(s) | 56, 266, 892, 1467, 1552, 2287, 2942 |
| SchI | GAGTC | 2 cut(s) | 470, 1439 |
| ScrFI | CCNGG | 4 cut(s) | 273, 895, 1946, 2284 |
| SduI | GDGCHC | 3 cut(s) | 403, 1910, 2552 |
| SfcI | CTRYAG | 2 cut(s) | 1218, 2070 |
| SfuI | TTCGAA | 1 cut(s) | 2236 |
| SinI | GGWCC | 4 cut(s) | 56, 266, 2287, 2942 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 143, 1475, 2844, 2994 |
| SmlI | CTYRAG | 2 cut(s) | 394, 1014 |
| SmoI | CTYRAG | 2 cut(s) | 394, 1014 |
| SpeI | ACTAGT | 1 cut(s) | 1058 |
| SphI | GCATGC | 1 cut(s) | 512 |
| SsiI | CCGC | 7 cut(s) | 83, 233, 1525, 1585, 1729, 2044, 2992 |
| SspI | AATATT | 1 cut(s) | 20 |
| SspMI | CTAG | 6 cut(s) | 1059, 1964, 2207, 2360, 2907, 3029 |
| SstI | GAGCTC | 1 cut(s) | 2552 |
| StyD4I | CCNGG | 4 cut(s) | 271, 893, 1944, 2282 |
| StyI | CCWWGG | 2 cut(s) | 87, 277 |
| TaaI | ACNGT | 7 cut(s) | 964, 1081, 1204, 1905, 2033, 2498, 2531 |
| TaiI | ACGT | 8 cut(s) | 1609, 1702, 1801, 1915, 2026, 2250, 2428, 2580 |
| TaqI | TCGA | 6 cut(s) | 73, 479, 2236, 2315, 2568, 2678 |
| TaqII | GACCGA | 2 cut(s) | 907, 2874 |
| TatI | WGTACW | 2 cut(s) | 1288, 1818 |
| TauI | GCSGC | 1 cut(s) | 85 |
| TfiI | GAWTC | 5 cut(s) | 664, 857, 1835, 2783, 2948 |
| TscAI | CASTG | 8 cut(s) | 246, 598, 777, 1871, 2102, 2151, 2536, 2758 |
| TseFI | GTSAC | 5 cut(s) | 610, 847, 1198, 1318, 1841 |
| TseI | GCWGC | 9 cut(s) | 31, 244, 286, 586, 1193, 1217, 1860, 2069, 2910 |
| Tsp45I | GTSAC | 5 cut(s) | 610, 847, 1198, 1318, 1841 |
| TspGWI | ACGGA | 2 cut(s) | 92, 2757 |
| TspRI | CASTG | 8 cut(s) | 246, 598, 777, 1871, 2102, 2151, 2536, 2758 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 263, 278, 1662, 1813 |
| Vha464I | CTTAAG | 1 cut(s) | 394 |
| VpaK11BI | GGWCC | 4 cut(s) | 56, 266, 2287, 2942 |
| VspI | ATTAAT | 2 cut(s) | 1335, 1485 |
| XapI | RAATTY | 7 cut(s) | 157, 456, 806, 1243, 1259, 2232, 3041 |
| XbaI | TCTAGA | 1 cut(s) | 1963 |
| XceI | RCATGY | 2 cut(s) | 170, 512 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2484, 2864 |
| XmiI | GTMKAC | 1 cut(s) | 1433 |
| XspI | CTAG | 6 cut(s) | 1059, 1964, 2207, 2360, 2907, 3029 |
| Zsp2I | ATGCAT | 2 cut(s) | 790, 1414 |