Rorug03G0268200

Phosphatidylinositol 4-kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000322
Physical Location & Seq
Reverse (-)
26309754 .. 26313225
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0268200.1

Sequence Viewer

Length: 870 bp
ATGGTGGGGAACGATACAGAACGAAACTCACAGACCAGAAAGATGGGTCGGGGGAAAATTGAGATCAAGAAAATTGAAAATCTCAGTAGCAGGCAAGTCACGTTCTCGAAACGCCGCAGCGGATTGTTCAAGAAGGCAGCCGAATTGTCAGTACTATGCGATGCCGAGATTGCAGTCATAATTTTTTCTCAAACTGGAAAGCTTTATGAACAATCAAGCACCAGCATGGAGAAAATTCTTTCGAGGTATCACAATTTTTCAAACAAGCAGGGCCTCCTCCAATTAGAGTATTCTTCAGAAGAGCTCCCCCATGAATCGGCTGAAGAGGAGCCGAAATTTGATTCAAGCGCACTGCAGAGAAAATTTGAAGCAATGCAGCAAAAGATTGAAGCATTACAGTTGGAACTCTGTCGGATGAAGGGTCAGAAACTGGATGGGCTGAGCTTAAATGAACTGTATGAGCTGGAGAAACAACAAATGGAAGGGGAATTAGCTGTTAAGAATAAGAAGGAGGAAATACTTTCGGAGGAGAAACAGAAGACTACAAAGGAGCATGAGAAGGCTATGCAAAAGATTGAGAATCTGGAAAGAGAGATTGAGGAATTGAGGAGGCAAAACTATGTGCGCCCATCTATCATTGAATCCCATCCTCCTAAGAAGAGGCTTTTATACTTTACAAACTCATCCAAAGCCGTTTCCAATTGTTCAACTGCCTCTGAGCACGAAAGTGACGAGCATTCGGACACTTCTTTGCAATTGGGGTTTAATTTCTCAGGTTGTCATCATCCAAGTGTTGGTCAGTGCAAGAGGAAAGAAGCCCGCATTCGCCCCAGTTCTAATGATTCTGGGAGTCAAGTAGTCTCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

289

Amino Acids

33.09

Weight (kDa)

7.1

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 24 - 70 6.6e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 115 - 199 7.5e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 794
AciI CCGC 3 cut(s) 115, 120, 820
AcsI RAATTY 3 cut(s) 234, 335, 362
AcuI CTGAAG 2 cut(s) 279, 342
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 316, 794
AgsI TTSAA 8 cut(s) 77, 130, 261, 345, 368, 389, 641, 708
AleI CACNNNNGTG 1 cut(s) 726
AluBI AGCT 5 cut(s) 202, 304, 444, 463, 494
AluI AGCT 5 cut(s) 202, 304, 444, 463, 494
Alw21I GWGCWC 2 cut(s) 306, 723
Alw26I GTCTC 1 cut(s) 865
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 117, 137, 376
ApoI RAATTY 3 cut(s) 234, 335, 362
AspLEI GCGC 2 cut(s) 350, 627
AspS9I GGNCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 306, 723
BbvI GCAGC 3 cut(s) 129, 149, 388
BccI CCATC 4 cut(s) 37, 428, 637, 654
BceAI ACGGC 1 cut(s) 677
BcoDI GTCTC 1 cut(s) 865
BfmI CTRYAG 1 cut(s) 353
BisI GCNGC 4 cut(s) 115, 118, 138, 377
BlpI GCTNAGC 1 cut(s) 440
BlsI GCNGC 4 cut(s) 116, 119, 139, 378
BmcAI AGTACT 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 485
Bpu1102I GCTNAGC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 794
Bse1I ACTGG 3 cut(s) 199, 435, 831
Bse3DI GCAATG 1 cut(s) 378
BseGI GGATG 5 cut(s) 420, 439, 646, 683, 784
BseLI CCNNNNNNNGG 2 cut(s) 316, 794
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 4 cut(s) 97, 431, 708, 786
BseNI ACTGG 3 cut(s) 199, 435, 831
BseRI GAGGAG 4 cut(s) 266, 341, 542, 622
BseXI GCAGC 3 cut(s) 129, 149, 388
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 306, 723
BslI CCNNNNNNNGG 2 cut(s) 316, 794
BsmAI GTCTC 1 cut(s) 865
BsmI GAATGC 2 cut(s) 736, 822
BsnI GGCC 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 306, 723
Bsp143I GATC 1 cut(s) 63
Bsp1720I GCTNAGC 1 cut(s) 440
BspACI CCGC 3 cut(s) 115, 120, 820
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 4 cut(s) 96, 432, 709, 785
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 3 cut(s) 199, 435, 831
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 399, 456
Bst6I CTCTTC 3 cut(s) 294, 318, 653
BstC8I GCNNGC 2 cut(s) 92, 820
BstDEI CTNAG 6 cut(s) 83, 440, 654, 717, 772, 862
BstF5I GGATG 5 cut(s) 420, 439, 646, 683, 784
BstHHI GCGC 2 cut(s) 350, 627
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 865
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 129, 149, 388
BstV2I GAAGAC 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 5 cut(s) 420, 439, 646, 683, 784
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 350, 806
Cac8I GCNNGC 2 cut(s) 92, 820
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 2 cut(s) 350, 627
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 226, 311, 554
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 6 cut(s) 83, 440, 654, 717, 772, 862
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 294, 318, 653
EarI CTCTTC 3 cut(s) 294, 318, 653
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 279, 342
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 3 cut(s) 229, 314, 557
FatI CATG 3 cut(s) 225, 310, 553
FauI CCCGC 1 cut(s) 827
Fnu4HI GCNGC 4 cut(s) 115, 118, 138, 377
FokI GGATG 5 cut(s) 427, 446, 633, 670, 771
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 4 cut(s) 115, 118, 138, 377
GlaI GCGC 2 cut(s) 349, 626
GluI GCNGC 4 cut(s) 115, 118, 138, 377
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 1 cut(s) 273
HhaI GCGC 2 cut(s) 350, 627
Hin1II CATG 3 cut(s) 229, 314, 557
Hin6I GCGC 2 cut(s) 348, 625
HinP1I GCGC 2 cut(s) 348, 625
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 6 cut(s) 314, 341, 580, 641, 842, 850
Hpy188I TCNGA 7 cut(s) 298, 414, 426, 526, 718, 742, 865
Hpy188III TCNNGA 4 cut(s) 67, 106, 130, 584
HpyAV CCTTC 5 cut(s) 127, 412, 476, 502, 553
HpyCH4III ACNGT 2 cut(s) 399, 456
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 6 cut(s) 173, 355, 376, 568, 754, 804
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 6 cut(s) 83, 440, 654, 717, 772, 862
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 3 cut(s) 229, 314, 557
HspAI GCGC 2 cut(s) 348, 625
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 3 cut(s) 309, 328, 550
Lsp1109I GCAGC 3 cut(s) 129, 149, 388
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 97, 728
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 5 cut(s) 285, 311, 335, 550, 670
MfeI CAATTG 2 cut(s) 700, 755
MhlI GDGCHC 2 cut(s) 306, 723
MlyI GAGTC 1 cut(s) 859
MmeI TCCRAC 2 cut(s) 381, 392
MseI TTAA 3 cut(s) 446, 498, 765
MslI CAYNNNNRTG 3 cut(s) 224, 726, 789
MspA1I CMGCKG 1 cut(s) 120
MunI CAATTG 2 cut(s) 700, 755
Mva1269I GAATGC 2 cut(s) 736, 822
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 229, 314, 557
NlaIV GGNNCC 1 cut(s) 330
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 97, 728
OliI CACNNNNGTG 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PctI GAATGC 2 cut(s) 736, 822
PfeI GAWTC 5 cut(s) 314, 341, 580, 641, 842
PflMI CCANNNNNTGG 1 cut(s) 794
PkrI GCNGC 4 cut(s) 116, 119, 139, 378
PleI GAGTC 1 cut(s) 858
PpsI GAGTC 1 cut(s) 858
Psp124BI GAGCTC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 430
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 3 cut(s) 224, 726, 789
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 446, 498, 765
SatI GCNGC 4 cut(s) 115, 118, 138, 377
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 1 cut(s) 859
SduI GDGCHC 2 cut(s) 306, 723
SetI ASST 8 cut(s) 104, 204, 248, 306, 446, 465, 496, 778
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 353
SmiMI CAYNNNNRTG 3 cut(s) 224, 726, 789
SsiI CCGC 3 cut(s) 115, 120, 820
SstI GAGCTC 1 cut(s) 306
TaaI ACNGT 2 cut(s) 399, 456
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 107, 242
TatI WGTACW 1 cut(s) 151
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 5 cut(s) 314, 341, 580, 641, 842
Tru1I TTAA 3 cut(s) 446, 498, 765
Tru9I TTAA 3 cut(s) 446, 498, 765
TscAI CASTG 2 cut(s) 357, 806
TseFI GTSAC 2 cut(s) 97, 728
TseI GCWGC 3 cut(s) 117, 137, 376
Tsp45I GTSAC 2 cut(s) 97, 728
TspDTI ATGAA 4 cut(s) 222, 327, 431, 465
TspRI CASTG 2 cut(s) 357, 806
Van91I CCANNNNNTGG 1 cut(s) 794
XapI RAATTY 3 cut(s) 234, 335, 362
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.