Rorug06G0075200

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
9997740 .. 9999092
1353 bp
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UTR
Exon/CDS
Intron
Rorug06G0075200.1

Sequence Viewer

Length: 990 bp
ATGAGTGTGACACTGTACCAACCTCACATGAAGGTTGCATCTGATTCAGAATCTTTTCTTCTTCCTAATCTCCCGCATGAGATCAAGATGACAAGAAACGAACTACCATATTTTCTTACTCATCAAAATAGCGAGGGAGAACTCTTCAAATTGCTCGGAGCATTGAAAGAGACTGAGGAAAGGAGCTATGGGATTATCATTAACAGCTTCTATGAACTTGAGCCAGATTATGTAGATCACTATAGGAAGGTGTTTGGGAGGAAGTCATGGCATATCGGCCCAGTTTCATTATGCAACAAGGCAGAAAAAGAGATATCAGCTAGGGGAAGGGAAGGCTCAGTTGATGATGTACATGAGTGCTTGCAATGGCTCAATTCCAAGAAACCCCGTTCGGTTGTTTATGTATGCTTTGGAAGCCTAAACAGTTTCAGTGACTGTCAGCTCTTAGAAATTGCCTTGGGTCTTGAGGCTTCACAACAGCAATTCATTTGGACTGTCAAGAAGGAAAAGAATGATAAAGAAGTGTGGTTGCCTGAAGGATTAGAGCAGAGAATGGAGGGAAAGGGACTTATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTCAACATGAAGCAGTTGGAGCGTTTCTTACTCATTGTGGGTGGAACTCAATCCTTGAAGGAGTGACTGCCGGGGTTCCAATGATCACCTGGCCGGTGTTTGCAGACCAGTTTTACAATGAGAAGTTGGTGACTCAAATACTTGGGATTGGGGTTGCTGTGGGTTCTCAAAAGTCGGAGGATGGTGGTGTGAAGAGCGAAGCCAGTGTGAAGAGGGAGGCCATAGAGAAGGCTGTGACTGATATCATGGAGGGTGAGGAAGTTGAGGAAATAAGAAGCAAAGCTATTGCGCTAGGCGAGATCGCAAGGAGCGCAGTTGAAGATGGTGGTTCATCGTTCTTGGATTTAACTTCTCTAATTGAAGAGCTGAGGTCCTTTGGGTCTTGA

Protein Analysis

329

Amino Acids

36.83

Weight (kDa)

5.09

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 120 - 248 5.6e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AciI CCGC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 2 cut(s) 17, 351
AgsI TTSAA 6 cut(s) 148, 166, 608, 662, 923, 965
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 6 cut(s) 186, 207, 320, 442, 887, 970
AluI AGCT 6 cut(s) 186, 207, 320, 442, 887, 970
Alw26I GTCTC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 435
AoxI GGCC 3 cut(s) 277, 695, 822
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 2 cut(s) 895, 917
AspS9I GGNCC 2 cut(s) 278, 975
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 3 cut(s) 682, 745, 869
AvaII GGWCC 1 cut(s) 975
BanII GRGCYC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 971
BccI CCATC 2 cut(s) 779, 920
BciT130I CCWGG 1 cut(s) 694
BclI TGATCA 1 cut(s) 687
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 321, 896
BfmI CTRYAG 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 676, 694
Bme18I GGWCC 1 cut(s) 975
BmgT120I GGNCC 2 cut(s) 278, 975
BmiI GGNNCC 2 cut(s) 588, 681
BmrFI CCNGG 2 cut(s) 676, 694
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 971
BpuEI CTTGAG 2 cut(s) 239, 485
BpuMI CCSGG 1 cut(s) 676
BsaJI CCNNGG 2 cut(s) 456, 675
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 281, 712, 807
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 694
BseDI CCNNGG 2 cut(s) 456, 675
BseGI GGATG 1 cut(s) 790
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 3 cut(s) 165, 351, 962
BseNI ACTGG 3 cut(s) 281, 712, 807
BshFI GGCC 3 cut(s) 279, 697, 824
BsiSI CCGG 2 cut(s) 675, 698
BslFI GGGAC 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 3 cut(s) 279, 697, 824
Bsp1286I GDGCHC 1 cut(s) 589
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 4 cut(s) 81, 235, 687, 903
BspACI CCGC 1 cut(s) 74
BspANI GGCC 3 cut(s) 279, 697, 824
BspCNI CTCAG 3 cut(s) 166, 350, 963
BspLI GGNNCC 2 cut(s) 588, 681
BspQI GCTCTTC 2 cut(s) 791, 960
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 697
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 3 cut(s) 281, 712, 807
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 2 cut(s) 456, 675
BssMI GATC 4 cut(s) 81, 235, 687, 903
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 4 cut(s) 15, 425, 437, 496
Bst6I CTCTTC 4 cut(s) 149, 791, 809, 960
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 4 cut(s) 174, 337, 445, 971
BstF5I GGATG 1 cut(s) 790
BstHHI GCGC 2 cut(s) 895, 917
BstKTI GATC 4 cut(s) 84, 238, 690, 906
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 81, 235, 687, 903
BstMWI GCNNNNNNNGC 3 cut(s) 414, 623, 914
BstNI CCWGG 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 674, 692
BstSFI CTRYAG 1 cut(s) 241
BsuRI GGCC 3 cut(s) 279, 697, 824
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 3 cut(s) 11, 436, 814
Cac8I GCNNGC 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 435
CfoI GCGC 2 cut(s) 895, 917
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 2 cut(s) 278, 975
Csp6I GTAC 2 cut(s) 16, 350
CviAII CATG 6 cut(s) 28, 77, 267, 353, 611, 850
CviQI GTAC 2 cut(s) 16, 350
DdeI CTNAG 4 cut(s) 174, 337, 445, 971
DpnI GATC 4 cut(s) 83, 237, 689, 905
DpnII GATC 4 cut(s) 81, 235, 687, 903
EaeI YGGCCR 1 cut(s) 695
Eam1104I CTCTTC 4 cut(s) 149, 791, 809, 960
EarI CTCTTC 4 cut(s) 149, 791, 809, 960
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 589
Eco32I GATATC 2 cut(s) 315, 847
Eco47I GGWCC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 975
EcoRII CCWGG 1 cut(s) 692
EcoRV GATATC 2 cut(s) 315, 847
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 6 cut(s) 31, 80, 270, 356, 614, 853
FaqI GGGAC 1 cut(s) 579
FatI CATG 6 cut(s) 27, 76, 266, 352, 610, 849
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 687
FokI GGATG 1 cut(s) 797
FriOI GRGCYC 1 cut(s) 589
FspBI CTAG 2 cut(s) 321, 896
GlaI GCGC 2 cut(s) 894, 916
HaeIII GGCC 3 cut(s) 279, 697, 824
HapII CCGG 2 cut(s) 675, 698
HhaI GCGC 2 cut(s) 895, 917
Hin1II CATG 6 cut(s) 31, 80, 270, 356, 614, 853
Hin6I GCGC 2 cut(s) 893, 915
HinP1I GCGC 2 cut(s) 893, 915
HinfI GANTC 4 cut(s) 44, 50, 601, 736
HpaII CCGG 2 cut(s) 675, 698
HphI GGTGA 3 cut(s) 682, 745, 869
Hpy188I TCNGA 4 cut(s) 43, 49, 158, 781
Hpy188III TCNNGA 4 cut(s) 85, 464, 499, 987
HpyAV CCTTC 8 cut(s) 25, 241, 321, 326, 496, 530, 656, 826
HpyCH4III ACNGT 4 cut(s) 15, 425, 437, 496
HpyCH4V TGCA 4 cut(s) 38, 294, 364, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 623, 914
HpyF3I CTNAG 4 cut(s) 174, 337, 445, 971
Hsp92II CATG 6 cut(s) 31, 80, 270, 356, 614, 853
HspAI GCGC 2 cut(s) 893, 915
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 4 cut(s) 81, 235, 687, 903
LguI GCTCTTC 2 cut(s) 791, 960
LmnI GCTCC 5 cut(s) 158, 183, 592, 623, 912
LpnPI CCDG 9 cut(s) 237, 294, 546, 679, 688, 706, 711, 725, 820
LweI GCATC 1 cut(s) 47
MaeI CTAG 2 cut(s) 321, 896
MaeIII GTNAC 5 cut(s) 7, 431, 667, 733, 838
MalI GATC 4 cut(s) 83, 237, 689, 905
MboI GATC 4 cut(s) 81, 235, 687, 903
MboII GAAGA 8 cut(s) 50, 53, 136, 596, 808, 826, 935, 977
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 5 cut(s) 149, 373, 450, 482, 960
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 2 cut(s) 601, 759
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 201, 950
MspI CCGG 2 cut(s) 675, 698
MspR9I CCNGG 2 cut(s) 676, 694
MvaI CCWGG 1 cut(s) 694
MwoI GCNNNNNNNGC 3 cut(s) 414, 623, 914
NciI CCSGG 1 cut(s) 676
NdeII GATC 4 cut(s) 81, 235, 687, 903
NlaIII CATG 6 cut(s) 31, 80, 270, 356, 614, 853
NlaIV GGNNCC 2 cut(s) 588, 681
NmuCI GTSAC 5 cut(s) 7, 431, 667, 733, 838
PciSI GCTCTTC 2 cut(s) 791, 960
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 44, 50, 601
PleI GAGTC 1 cut(s) 730
PpsI GAGTC 1 cut(s) 730
PpuMI RGGWCCY 1 cut(s) 975
PsiI TTATAA 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 692
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 2 cut(s) 588, 681
PspPI GGNCC 2 cut(s) 278, 975
PspPPI RGGWCCY 1 cut(s) 975
PstNI CAGNNNCTG 1 cut(s) 435
RsaI GTAC 2 cut(s) 17, 351
RsaNI GTAC 2 cut(s) 16, 350
SapI GCTCTTC 2 cut(s) 791, 960
SaqAI TTAA 2 cut(s) 201, 950
Sau3AI GATC 4 cut(s) 81, 235, 687, 903
Sau96I GGNCC 2 cut(s) 278, 975
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 2 cut(s) 676, 694
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 975
SmlI CTYRAG 2 cut(s) 218, 464
SmoI CTYRAG 2 cut(s) 218, 464
Sse9I AATT 5 cut(s) 149, 373, 450, 482, 960
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 321, 896
StyD4I CCNGG 2 cut(s) 674, 692
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 4 cut(s) 15, 425, 437, 496
TasI AATT 5 cut(s) 149, 373, 450, 482, 960
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 3 cut(s) 44, 50, 601
Tru1I TTAA 2 cut(s) 201, 950
Tru9I TTAA 2 cut(s) 201, 950
TscAI CASTG 3 cut(s) 18, 436, 814
TseFI GTSAC 5 cut(s) 7, 431, 667, 733, 838
Tsp45I GTSAC 5 cut(s) 7, 431, 667, 733, 838
TspDTI ATGAA 6 cut(s) 44, 228, 276, 475, 627, 924
TspRI CASTG 3 cut(s) 18, 436, 814
VpaK11BI GGWCC 1 cut(s) 975
XcmI CCANNNNNNNNNTGG 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 2 cut(s) 321, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.