Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 789 |
| AatII | GACGTC | 1 cut(s) | 831 |
| Acc36I | ACCTGC | 1 cut(s) | 789 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 754 |
| AccI | GTMKAC | 1 cut(s) | 900 |
| AciI | CCGC | 1 cut(s) | 772 |
| AclWI | GGATC | 2 cut(s) | 152, 338 |
| AcsI | RAATTY | 3 cut(s) | 288, 481, 531 |
| AcuI | CTGAAG | 4 cut(s) | 477, 594, 882, 974 |
| AcyI | GRCGYC | 1 cut(s) | 828 |
| AfaI | GTAC | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 754 |
| AflIII | ACRYGT | 1 cut(s) | 835 |
| AgsI | TTSAA | 6 cut(s) | 170, 296, 824, 930, 989, 1060 |
| AjiI | CACGTC | 1 cut(s) | 910 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 669, 701 |
| AluBI | AGCT | 5 cut(s) | 72, 182, 793, 1072, 1086 |
| AluI | AGCT | 5 cut(s) | 72, 182, 793, 1072, 1086 |
| Alw21I | GWGCWC | 1 cut(s) | 8 |
| Alw26I | GTCTC | 1 cut(s) | 1095 |
| AlwI | GGATC | 2 cut(s) | 152, 338 |
| ApeKI | GCWGC | 2 cut(s) | 203, 322 |
| ApoI | RAATTY | 3 cut(s) | 288, 481, 531 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 587, 993 |
| AsuC2I | CCSGG | 1 cut(s) | 776 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| AsuII | TTCGAA | 1 cut(s) | 485 |
| AxyI | CCTNAGG | 1 cut(s) | 978 |
| BbsI | GAAGAC | 3 cut(s) | 101, 730, 831 |
| Bbv12I | GWGCWC | 1 cut(s) | 8 |
| BbvI | GCAGC | 2 cut(s) | 190, 309 |
| BccI | CCATC | 2 cut(s) | 608, 1057 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 647, 681 |
| BciVI | GTATCC | 1 cut(s) | 1041 |
| BcnI | CCSGG | 1 cut(s) | 776 |
| BcoDI | GTCTC | 1 cut(s) | 1095 |
| BfaI | CTAG | 2 cut(s) | 566, 593 |
| BfuAI | ACCTGC | 1 cut(s) | 789 |
| BfuI | GTATCC | 1 cut(s) | 1041 |
| BglII | AGATCT | 2 cut(s) | 443, 698 |
| BisI | GCNGC | 2 cut(s) | 204, 323 |
| BlsI | GCNGC | 2 cut(s) | 205, 324 |
| Bme1390I | CCNGG | 1 cut(s) | 776 |
| BmgBI | CACGTC | 1 cut(s) | 910 |
| BmrFI | CCNGG | 1 cut(s) | 776 |
| BmrI | ACTGGG | 1 cut(s) | 518 |
| BmsI | GCATC | 3 cut(s) | 32, 263, 723 |
| BmuI | ACTGGG | 1 cut(s) | 518 |
| BpiI | GAAGAC | 3 cut(s) | 101, 730, 831 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 211, 243 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| Bpu14I | TTCGAA | 1 cut(s) | 485 |
| BpuMI | CCSGG | 1 cut(s) | 776 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 1 cut(s) | 828 |
| BsaJI | CCNNGG | 1 cut(s) | 728 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 754 |
| Bse1I | ACTGG | 2 cut(s) | 513, 859 |
| Bse21I | CCTNAGG | 1 cut(s) | 978 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseDI | CCNNGG | 1 cut(s) | 728 |
| BseGI | GGATG | 5 cut(s) | 160, 280, 421, 738, 1029 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 754 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 2 cut(s) | 59, 1079 |
| BseNI | ACTGG | 2 cut(s) | 513, 859 |
| BseRI | GAGGAG | 1 cut(s) | 1064 |
| BseXI | GCAGC | 2 cut(s) | 190, 309 |
| BseYI | CCCAGC | 1 cut(s) | 793 |
| BsgI | GTGCAG | 2 cut(s) | 452, 823 |
| BsiHKAI | GWGCWC | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 775 |
| BslFI | GGGAC | 2 cut(s) | 771, 996 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 754 |
| BsmAI | GTCTC | 1 cut(s) | 1095 |
| BsmFI | GGGAC | 2 cut(s) | 771, 996 |
| BsmI | GAATGC | 1 cut(s) | 302 |
| Bsp119I | TTCGAA | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| BspACI | CCGC | 1 cut(s) | 772 |
| BspCNI | CTCAG | 2 cut(s) | 60, 1078 |
| BspMI | ACCTGC | 1 cut(s) | 789 |
| BspPI | GGATC | 2 cut(s) | 152, 338 |
| BspT104I | TTCGAA | 1 cut(s) | 485 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrI | ACTGG | 2 cut(s) | 513, 859 |
| BssECI | CCNNGG | 1 cut(s) | 728 |
| BssMI | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| BssNI | GRCGYC | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 1 cut(s) | 728 |
| Bst4CI | ACNGT | 3 cut(s) | 319, 563, 712 |
| Bst6I | CTCTTC | 2 cut(s) | 508, 570 |
| BstACI | GRCGYC | 1 cut(s) | 828 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 200, 742 |
| BstBI | TTCGAA | 1 cut(s) | 485 |
| BstDEI | CTNAG | 4 cut(s) | 68, 978, 1065, 1082 |
| BstF5I | GGATG | 5 cut(s) | 160, 280, 421, 738, 1029 |
| BstKTI | GATC | 5 cut(s) | 160, 346, 446, 631, 701 |
| BstMAI | GTCTC | 1 cut(s) | 1095 |
| BstMBI | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 200, 742 |
| BstNSI | RCATGY | 2 cut(s) | 606, 839 |
| BstSCI | CCNGG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 2 cut(s) | 190, 309 |
| BstV2I | GAAGAC | 3 cut(s) | 101, 730, 831 |
| BstX2I | RGATCY | 2 cut(s) | 443, 698 |
| BstYI | RGATCY | 2 cut(s) | 443, 698 |
| Bsu36I | CCTNAGG | 1 cut(s) | 978 |
| BsuI | GTATCC | 1 cut(s) | 1041 |
| BtrI | CACGTC | 1 cut(s) | 910 |
| BtsCI | GGATG | 5 cut(s) | 160, 280, 421, 738, 1029 |
| BtsI | GCAGTG | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 117 |
| BveI | ACCTGC | 1 cut(s) | 789 |
| Csp6I | GTAC | 1 cut(s) | 356 |
| CviAII | CATG | 7 cut(s) | 264, 301, 398, 603, 719, 836, 904 |
| CviJI | RGCY | 7 cut(s) | 72, 182, 386, 793, 817, 1072, 1086 |
| CviKI_1 | RGCY | 7 cut(s) | 72, 182, 386, 793, 817, 1072, 1086 |
| CviQI | GTAC | 1 cut(s) | 356 |
| DdeI | CTNAG | 4 cut(s) | 68, 978, 1065, 1082 |
| DpnI | GATC | 5 cut(s) | 159, 345, 445, 630, 700 |
| DpnII | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| DraI | TTTAAA | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 508, 570 |
| EarI | CTCTTC | 2 cut(s) | 508, 570 |
| EciI | GGCGGA | 1 cut(s) | 761 |
| Eco130I | CCWWGG | 1 cut(s) | 728 |
| Eco57I | CTGAAG | 4 cut(s) | 477, 594, 882, 974 |
| Eco81I | CCTNAGG | 1 cut(s) | 978 |
| EcoRI | GAATTC | 2 cut(s) | 288, 481 |
| EcoT14I | CCWWGG | 1 cut(s) | 728 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 302 |
| ErhI | CCWWGG | 1 cut(s) | 728 |
| FaeI | CATG | 7 cut(s) | 267, 304, 401, 606, 722, 839, 907 |
| FaqI | GGGAC | 2 cut(s) | 771, 996 |
| FatI | CATG | 7 cut(s) | 263, 300, 397, 602, 718, 835, 903 |
| FblI | GTMKAC | 1 cut(s) | 900 |
| Fnu4HI | GCNGC | 2 cut(s) | 204, 323 |
| FokI | GGATG | 5 cut(s) | 167, 287, 428, 745, 1036 |
| Fsp4HI | GCNGC | 2 cut(s) | 204, 323 |
| FspBI | CTAG | 2 cut(s) | 566, 593 |
| GluI | GCNGC | 2 cut(s) | 204, 323 |
| GsaI | CCCAGC | 1 cut(s) | 797 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HapII | CCGG | 1 cut(s) | 775 |
| Hin1I | GRCGYC | 1 cut(s) | 828 |
| Hin1II | CATG | 7 cut(s) | 267, 304, 401, 606, 722, 839, 907 |
| HincII | GTYRAC | 1 cut(s) | 261 |
| HindII | GTYRAC | 1 cut(s) | 261 |
| HindIII | AAGCTT | 1 cut(s) | 1084 |
| HinfI | GANTC | 7 cut(s) | 138, 215, 569, 779, 887, 913, 1012 |
| HpaII | CCGG | 1 cut(s) | 775 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 3 cut(s) | 261, 901, 1007 |
| Hpy188I | TCNGA | 5 cut(s) | 69, 352, 574, 918, 1068 |
| Hpy188III | TCNNGA | 8 cut(s) | 161, 219, 293, 566, 706, 821, 841, 1016 |
| Hpy8I | GTNNAC | 3 cut(s) | 261, 901, 1007 |
| Hpy99I | CGWCG | 1 cut(s) | 563 |
| HpyAV | CCTTC | 3 cut(s) | 45, 481, 866 |
| HpyCH4III | ACNGT | 3 cut(s) | 319, 563, 712 |
| HpyCH4IV | ACGT | 3 cut(s) | 130, 828, 909 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 200, 742 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 978, 1065, 1082 |
| HpySE526I | ACGT | 3 cut(s) | 130, 828, 909 |
| Hsp92I | GRCGYC | 1 cut(s) | 828 |
| Hsp92II | CATG | 7 cut(s) | 267, 304, 401, 606, 722, 839, 907 |
| Kzo9I | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| LmnI | GCTCC | 2 cut(s) | 750, 1077 |
| Lsp1109I | GCAGC | 2 cut(s) | 190, 309 |
| LweI | GCATC | 3 cut(s) | 32, 263, 723 |
| MaeI | CTAG | 2 cut(s) | 566, 593 |
| MaeII | ACGT | 3 cut(s) | 130, 828, 909 |
| MaeIII | GTNAC | 6 cut(s) | 80, 240, 521, 554, 634, 910 |
| MalI | GATC | 5 cut(s) | 159, 345, 445, 630, 700 |
| MboI | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| MflI | RGATCY | 2 cut(s) | 443, 698 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 7 cut(s) | 247, 288, 327, 481, 531, 765, 941 |
| MlyI | GAGTC | 1 cut(s) | 907 |
| MnlI | CCTC | 7 cut(s) | 28, 71, 305, 429, 1020, 1074, 1085 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 302 |
| MroXI | GAANNNNTTC | 2 cut(s) | 587, 993 |
| MseI | TTAA | 5 cut(s) | 378, 411, 452, 546, 1037 |
| MslI | CAYNNNNRTG | 3 cut(s) | 236, 881, 908 |
| MspI | CCGG | 1 cut(s) | 775 |
| MspR9I | CCNGG | 1 cut(s) | 776 |
| Mva1269I | GAATGC | 1 cut(s) | 302 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 200, 742 |
| NciI | CCSGG | 1 cut(s) | 776 |
| NdeII | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| NlaIII | CATG | 7 cut(s) | 267, 304, 401, 606, 722, 839, 907 |
| NmuCI | GTSAC | 3 cut(s) | 80, 240, 910 |
| NsiI | ATGCAT | 2 cut(s) | 256, 302 |
| NspI | RCATGY | 2 cut(s) | 606, 839 |
| NspV | TTCGAA | 1 cut(s) | 485 |
| PaqCI | CACCTGC | 1 cut(s) | 789 |
| PciI | ACATGT | 1 cut(s) | 835 |
| PctI | GAATGC | 1 cut(s) | 302 |
| PdmI | GAANNNNTTC | 2 cut(s) | 587, 993 |
| PfeI | GAWTC | 6 cut(s) | 138, 215, 569, 779, 887, 1012 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 754 |
| PkrI | GCNGC | 2 cut(s) | 205, 324 |
| PleI | GAGTC | 1 cut(s) | 907 |
| PpsI | GAGTC | 1 cut(s) | 907 |
| PscI | ACATGT | 1 cut(s) | 835 |
| PspFI | CCCAGC | 1 cut(s) | 793 |
| PsuI | RGATCY | 2 cut(s) | 443, 698 |
| RsaI | GTAC | 1 cut(s) | 357 |
| RsaNI | GTAC | 1 cut(s) | 356 |
| RseI | CAYNNNNRTG | 3 cut(s) | 236, 881, 908 |
| SaqAI | TTAA | 5 cut(s) | 378, 411, 452, 546, 1037 |
| SatI | GCNGC | 2 cut(s) | 204, 323 |
| Sau3AI | GATC | 5 cut(s) | 157, 343, 443, 628, 698 |
| SchI | GAGTC | 1 cut(s) | 907 |
| ScrFI | CCNGG | 1 cut(s) | 776 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SfaNI | GCATC | 3 cut(s) | 32, 263, 723 |
| SfuI | TTCGAA | 1 cut(s) | 485 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 236, 881, 908 |
| Sse9I | AATT | 7 cut(s) | 247, 288, 327, 481, 531, 765, 941 |
| SsiI | CCGC | 1 cut(s) | 772 |
| SspI | AATATT | 1 cut(s) | 588 |
| SspMI | CTAG | 2 cut(s) | 566, 593 |
| StyD4I | CCNGG | 1 cut(s) | 774 |
| StyI | CCWWGG | 1 cut(s) | 728 |
| TaaI | ACNGT | 3 cut(s) | 319, 563, 712 |
| TaiI | ACGT | 3 cut(s) | 133, 831, 912 |
| TaqI | TCGA | 5 cut(s) | 210, 218, 485, 631, 1077 |
| TasI | AATT | 7 cut(s) | 247, 288, 327, 481, 531, 765, 941 |
| TfiI | GAWTC | 6 cut(s) | 138, 215, 569, 779, 887, 1012 |
| Tru1I | TTAA | 5 cut(s) | 378, 411, 452, 546, 1037 |
| Tru9I | TTAA | 5 cut(s) | 378, 411, 452, 546, 1037 |
| TscAI | CASTG | 2 cut(s) | 53, 124 |
| TseFI | GTSAC | 3 cut(s) | 80, 240, 910 |
| TseI | GCWGC | 2 cut(s) | 203, 322 |
| Tsp45I | GTSAC | 3 cut(s) | 80, 240, 910 |
| TspDTI | ATGAA | 5 cut(s) | 27, 291, 317, 414, 950 |
| TspGWI | ACGGA | 3 cut(s) | 336, 1023, 1024 |
| TspRI | CASTG | 2 cut(s) | 53, 124 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 754 |
| XapI | RAATTY | 3 cut(s) | 288, 481, 531 |
| XbaI | TCTAGA | 1 cut(s) | 565 |
| XceI | RCATGY | 2 cut(s) | 606, 839 |
| XmiI | GTMKAC | 1 cut(s) | 900 |
| XmnI | GAANNNNTTC | 2 cut(s) | 587, 993 |
| XspI | CTAG | 2 cut(s) | 566, 593 |
| ZraI | GACGTC | 1 cut(s) | 829 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 302 |