Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 152 |
| AcsI | RAATTY | 1 cut(s) | 136 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 28, 29 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 38 |
| ApoI | RAATTY | 1 cut(s) | 136 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 160 |
| BccI | CCATC | 1 cut(s) | 170 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 38 |
| Bpu10I | CCTNAGC | 1 cut(s) | 58 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 28, 29 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 28, 29 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseYI | CCCAGC | 1 cut(s) | 22 |
| BslFI | GGGAC | 1 cut(s) | 45 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 28, 29 |
| BsmFI | GGGAC | 1 cut(s) | 45 |
| BspCNI | CTCAG | 1 cut(s) | 71 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 58 |
| BstF5I | GGATG | 1 cut(s) | 199 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BtsCI | GGATG | 1 cut(s) | 199 |
| BtsIMutI | CAGTG | 1 cut(s) | 208 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 84, 119 |
| CviAII | CATG | 1 cut(s) | 190 |
| CviJI | RGCY | 4 cut(s) | 26, 57, 71, 161 |
| CviKI_1 | RGCY | 4 cut(s) | 26, 57, 71, 161 |
| DdeI | CTNAG | 1 cut(s) | 58 |
| DriI | GACNNNNNGTC | 1 cut(s) | 38 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 1 cut(s) | 193 |
| FaiI | YATR | 2 cut(s) | 152, 191 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 145, 177 |
| FaqI | GGGAC | 1 cut(s) | 45 |
| FatI | CATG | 1 cut(s) | 189 |
| FokI | GGATG | 1 cut(s) | 206 |
| GsaI | CCCAGC | 1 cut(s) | 26 |
| Hin1II | CATG | 1 cut(s) | 193 |
| HinfI | GANTC | 2 cut(s) | 13, 18 |
| Hpy188I | TCNGA | 1 cut(s) | 134 |
| HpyAV | CCTTC | 1 cut(s) | 150 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 173 |
| HpyF3I | CTNAG | 1 cut(s) | 58 |
| Hsp92II | CATG | 1 cut(s) | 193 |
| LpnPI | CCDG | 4 cut(s) | 36, 45, 49, 112 |
| MboII | GAAGA | 1 cut(s) | 194 |
| MluCI | AATT | 1 cut(s) | 136 |
| MlyI | GAGTC | 1 cut(s) | 22 |
| MroXI | GAANNNNTTC | 1 cut(s) | 160 |
| MseI | TTAA | 1 cut(s) | 81 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| NlaIII | CATG | 1 cut(s) | 193 |
| PdmI | GAANNNNTTC | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 18 |
| PleI | GAGTC | 1 cut(s) | 21 |
| PpsI | GAGTC | 1 cut(s) | 21 |
| PsiI | TTATAA | 1 cut(s) | 152 |
| PspFI | CCCAGC | 1 cut(s) | 22 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SaqAI | TTAA | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 22 |
| SetI | ASST | 2 cut(s) | 87, 131 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| SgeI | CNNG | 7 cut(s) | 35, 40, 72, 76, 130, 139, 202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| Sse9I | AATT | 1 cut(s) | 136 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 1 cut(s) | 136 |
| TfiI | GAWTC | 1 cut(s) | 18 |
| Tru1I | TTAA | 1 cut(s) | 81 |
| Tru9I | TTAA | 1 cut(s) | 81 |
| TspDTI | ATGAA | 2 cut(s) | 178, 194 |
| XapI | RAATTY | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 160 |