Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

56173151 .. 56173483

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGCGACGTCGTCTTCCACGACCTCACGCCCCGGCGTCATGGCTCCTCGTGGTTCAGCTCCTGCCACAGTTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCGGAGGCATGGGCGGCAGCGGCGGTGGCTCTGGTGCCGGAAACAACATACTCAGGTTCTACACAGACTACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGACTTCGTCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

110

Amino Acids

11.02

Weight (kDa)

10.92

Isoelectric Point (pI)

71.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	60 - 99	3.4e-14	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	5 cut(s)	126, 153, 159, 162, 324
AclWI	GGATC	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	4 cut(s)	83, 138, 301, 329
AluI	AGCT	4 cut(s)	83, 138, 301, 329
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	105, 156
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	30, 283
BbvI	GCAGC	2 cut(s)	117, 168
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	5 cut(s)	106, 127, 154, 157, 160
BlsI	GCNGC	5 cut(s)	107, 128, 155, 158, 161
Bme1390I	CCNGG	2 cut(s)	57, 216
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	69, 175
BmrFI	CCNGG	2 cut(s)	57, 216
BpiI	GAAGAC	2 cut(s)	30, 283
BpmI	CTGGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	32, 205
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	117, 168
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	57, 141, 177, 321
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	225, 314
BspACI	CCGC	5 cut(s)	126, 153, 159, 162, 324
BspCNI	CTCAG	2 cut(s)	31, 204
BspEI	TCCGGA	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	69, 175
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	225, 314
BssNI	GRCGYC	2 cut(s)	32, 60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	94, 238
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	18, 191
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	228, 317
BstMBI	GATC	2 cut(s)	225, 314
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 159, 165
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	55, 214
BstV1I	GCAGC	2 cut(s)	117, 168
BstV2I	GAAGAC	2 cut(s)	30, 283
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	320
CseI	GACGC	1 cut(s)	49
CviAII	CATG	4 cut(s)	64, 148, 241, 250
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	2 cut(s)	227, 316
DpnII	GATC	2 cut(s)	225, 314
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	4 cut(s)	67, 151, 244, 253
FaiI	YATR	5 cut(s)	65, 149, 188, 242, 251
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	63, 147, 240, 249
Fnu4HI	GCNGC	5 cut(s)	106, 127, 154, 157, 160
Fsp4HI	GCNGC	5 cut(s)	106, 127, 154, 157, 160
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	106, 127, 154, 157, 160
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	4 cut(s)	57, 141, 177, 321
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	4 cut(s)	67, 151, 244, 253
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	4 cut(s)	57, 141, 177, 321
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	3 cut(s)	34, 37, 114
HpyCH4III	ACNGT	2 cut(s)	94, 238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 159, 165
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	4 cut(s)	67, 151, 244, 253
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	225, 314
LmnI	GCTCC	5 cut(s)	73, 88, 143, 217, 326
LpnPI	CCDG	9 cut(s)	70, 99, 148, 154, 156, 178, 190, 201, 228
Lsp1109I	GCAGC	2 cut(s)	117, 168
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	227, 316
MboI	GATC	2 cut(s)	225, 314
MboII	GAAGA	3 cut(s)	30, 235, 283
MflI	RGATCY	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	58, 81, 116, 137, 266, 293, 317
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	57, 141, 177, 321
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 159, 165
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	225, 314
NlaIII	CATG	4 cut(s)	67, 151, 244, 253
NlaIV	GGNNCC	2 cut(s)	69, 175
NmuCI	GTSAC	1 cut(s)	274
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	2 cut(s)	34, 272
PkrI	GCNGC	5 cut(s)	107, 128, 155, 158, 161
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	69, 175
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	2 cut(s)	34, 272
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	5 cut(s)	106, 127, 154, 157, 160
Sau3AI	GATC	2 cut(s)	225, 314
ScrFI	CCNGG	2 cut(s)	57, 216
SetI	ASST	9 cut(s)	35, 50, 85, 140, 197, 291, 303, 309, 331
SgrAI	CRCCGGYG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	5 cut(s)	126, 153, 159, 162, 324
StyD4I	CCNGG	2 cut(s)	55, 214
TaaI	ACNGT	2 cut(s)	94, 238
TaiI	ACGT	2 cut(s)	35, 291
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	3 cut(s)	129, 156, 162
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	105, 156
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	2 cut(s)	34, 272
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.