Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 91 | 3.7e-09 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 468 |
| AccIII | TCCGGA | 1 cut(s) | 584 |
| AciI | CCGC | 1 cut(s) | 534 |
| AclWI | GGATC | 4 cut(s) | 141, 333, 346, 556 |
| AcuI | CTGAAG | 1 cut(s) | 500 |
| AcyI | GRCGYC | 1 cut(s) | 465 |
| AfaI | GTAC | 2 cut(s) | 91, 328 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 455 |
| AgsI | TTSAA | 1 cut(s) | 431 |
| AhlI | ACTAGT | 2 cut(s) | 314, 365 |
| AjnI | CCWGG | 2 cut(s) | 92, 420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 4 cut(s) | 53, 199, 568, 590 |
| AluI | AGCT | 4 cut(s) | 53, 199, 568, 590 |
| Alw21I | GWGCWC | 3 cut(s) | 456, 508, 570 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| Alw44I | GTGCAC | 2 cut(s) | 452, 504 |
| AlwI | GGATC | 4 cut(s) | 141, 333, 346, 556 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 584 |
| ApaLI | GTGCAC | 2 cut(s) | 452, 504 |
| ApeKI | GCWGC | 3 cut(s) | 50, 293, 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 338, 370 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 1 cut(s) | 360 |
| AsuHPI | GGTGA | 1 cut(s) | 410 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 1 cut(s) | 360 |
| BaeGI | GKGCMC | 4 cut(s) | 164, 306, 456, 508 |
| BamHI | GGATCC | 1 cut(s) | 338 |
| BanII | GRGCYC | 2 cut(s) | 262, 570 |
| BauI | CACGAG | 1 cut(s) | 182 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| Bbv12I | GWGCWC | 3 cut(s) | 456, 508, 570 |
| BbvI | GCAGC | 3 cut(s) | 62, 280, 577 |
| BccI | CCATC | 2 cut(s) | 374, 589 |
| BceAI | ACGGC | 2 cut(s) | 72, 472 |
| BciT130I | CCWGG | 2 cut(s) | 94, 422 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BcuI | ACTAGT | 2 cut(s) | 314, 365 |
| BfaI | CTAG | 3 cut(s) | 315, 366, 598 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 3 cut(s) | 51, 294, 591 |
| BlpI | GCTNAGC | 1 cut(s) | 569 |
| BlsI | GCNGC | 3 cut(s) | 52, 295, 592 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 422 |
| Bme18I | GGWCC | 1 cut(s) | 360 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 360 |
| BmiI | GGNNCC | 4 cut(s) | 6, 245, 340, 361 |
| BmrFI | CCNGG | 2 cut(s) | 94, 422 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| BpmI | CTGGAG | 4 cut(s) | 93, 179, 282, 537 |
| Bpu10I | CCTNAGC | 1 cut(s) | 529 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 569 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 584 |
| BsaHI | GRCGYC | 1 cut(s) | 465 |
| BsaJI | CCNNGG | 3 cut(s) | 306, 492, 544 |
| BsaWI | WCCGGW | 1 cut(s) | 584 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 455 |
| Bse1I | ACTGG | 3 cut(s) | 205, 299, 554 |
| BseAI | TCCGGA | 1 cut(s) | 584 |
| BseBI | CCWGG | 2 cut(s) | 94, 422 |
| BseDI | CCNNGG | 3 cut(s) | 306, 492, 544 |
| BseGI | GGATG | 2 cut(s) | 392, 581 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 455 |
| BseMII | CTCAG | 2 cut(s) | 543, 583 |
| BseNI | ACTGG | 3 cut(s) | 205, 299, 554 |
| BseRI | GAGGAG | 3 cut(s) | 44, 423, 426 |
| BseSI | GKGCMC | 4 cut(s) | 164, 306, 456, 508 |
| BseXI | GCAGC | 3 cut(s) | 62, 280, 577 |
| BsiHKAI | GWGCWC | 3 cut(s) | 456, 508, 570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 585 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 455 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 6 cut(s) | 164, 262, 306, 456, 508, 570 |
| Bsp13I | TCCGGA | 1 cut(s) | 584 |
| Bsp143I | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 569 |
| Bsp19I | CCATGG | 1 cut(s) | 306 |
| BspACI | CCGC | 1 cut(s) | 534 |
| BspCNI | CTCAG | 2 cut(s) | 542, 582 |
| BspEI | TCCGGA | 1 cut(s) | 584 |
| BspLI | GGNNCC | 4 cut(s) | 6, 245, 340, 361 |
| BspPI | GGATC | 4 cut(s) | 141, 333, 346, 556 |
| BsrI | ACTGG | 3 cut(s) | 205, 299, 554 |
| BssECI | CCNNGG | 3 cut(s) | 306, 492, 544 |
| BssMI | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| BssNI | GRCGYC | 1 cut(s) | 465 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 422 |
| Bst4CI | ACNGT | 1 cut(s) | 545 |
| Bst6I | CTCTTC | 1 cut(s) | 441 |
| BstACI | GRCGYC | 1 cut(s) | 465 |
| BstDEI | CTNAG | 2 cut(s) | 529, 569 |
| BstDSI | CCRYGG | 2 cut(s) | 306, 544 |
| BstEII | GGTNACC | 1 cut(s) | 473 |
| BstF5I | GGATG | 2 cut(s) | 392, 581 |
| BstKTI | GATC | 5 cut(s) | 136, 189, 341, 418, 551 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| BstNI | CCWGG | 2 cut(s) | 94, 422 |
| BstPI | GGTNACC | 1 cut(s) | 473 |
| BstSCI | CCNGG | 2 cut(s) | 92, 420 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 4 cut(s) | 164, 306, 456, 508 |
| BstV1I | GCAGC | 3 cut(s) | 62, 280, 577 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| BstX2I | RGATCY | 4 cut(s) | 133, 186, 338, 548 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 53 |
| BstYI | RGATCY | 4 cut(s) | 133, 186, 338, 548 |
| BtgI | CCRYGG | 2 cut(s) | 306, 544 |
| BtsCI | GGATG | 2 cut(s) | 392, 581 |
| BtsIMutI | CAGTG | 2 cut(s) | 306, 529 |
| Cfr13I | GGNCC | 1 cut(s) | 360 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 2 cut(s) | 90, 327 |
| CviAII | CATG | 3 cut(s) | 70, 307, 509 |
| CviJI | RGCY | 9 cut(s) | 53, 87, 199, 260, 293, 528, 568, 573, 590 |
| CviKI_1 | RGCY | 9 cut(s) | 53, 87, 199, 260, 293, 528, 568, 573, 590 |
| CviQI | GTAC | 2 cut(s) | 90, 327 |
| DdeI | CTNAG | 2 cut(s) | 529, 569 |
| DpnI | GATC | 5 cut(s) | 135, 188, 340, 417, 550 |
| DpnII | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| Eam1104I | CTCTTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 441 |
| Ecl136II | GAGCTC | 1 cut(s) | 568 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 2 cut(s) | 262, 570 |
| Eco47I | GGWCC | 1 cut(s) | 360 |
| Eco53kI | GAGCTC | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 1 cut(s) | 500 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| Eco91I | GGTNACC | 1 cut(s) | 473 |
| EcoICRI | GAGCTC | 1 cut(s) | 568 |
| EcoO65I | GGTNACC | 1 cut(s) | 473 |
| EcoRII | CCWGG | 2 cut(s) | 92, 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| EcoT38I | GRGCYC | 2 cut(s) | 262, 570 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaeI | CATG | 3 cut(s) | 73, 310, 512 |
| FaiI | YATR | 6 cut(s) | 71, 144, 210, 216, 308, 510 |
| FatI | CATG | 3 cut(s) | 69, 306, 508 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 294, 591 |
| FokI | GGATG | 2 cut(s) | 379, 568 |
| FriOI | GRGCYC | 2 cut(s) | 262, 570 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 294, 591 |
| FspBI | CTAG | 3 cut(s) | 315, 366, 598 |
| GluI | GCNGC | 3 cut(s) | 51, 294, 591 |
| GsuI | CTGGAG | 4 cut(s) | 93, 179, 282, 537 |
| HapII | CCGG | 1 cut(s) | 585 |
| Hin1I | GRCGYC | 1 cut(s) | 465 |
| Hin1II | CATG | 3 cut(s) | 73, 310, 512 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 1 cut(s) | 585 |
| HphI | GGTGA | 1 cut(s) | 410 |
| Hpy166II | GTNNAC | 3 cut(s) | 363, 454, 506 |
| Hpy188I | TCNGA | 1 cut(s) | 493 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 182, 247, 263, 563, 585 |
| Hpy8I | GTNNAC | 3 cut(s) | 363, 454, 506 |
| HpyAV | CCTTC | 1 cut(s) | 491 |
| HpyCH4III | ACNGT | 1 cut(s) | 545 |
| HpyCH4IV | ACGT | 2 cut(s) | 252, 465 |
| HpyCH4V | TGCA | 3 cut(s) | 400, 454, 506 |
| HpyF3I | CTNAG | 2 cut(s) | 529, 569 |
| HpySE526I | ACGT | 2 cut(s) | 252, 465 |
| Hsp92I | GRCGYC | 1 cut(s) | 465 |
| Hsp92II | CATG | 3 cut(s) | 73, 310, 512 |
| Kpn2I | TCCGGA | 1 cut(s) | 584 |
| Kzo9I | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| LmnI | GCTCC | 2 cut(s) | 301, 587 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 280, 577 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 3 cut(s) | 315, 366, 598 |
| MaeII | ACGT | 2 cut(s) | 252, 465 |
| MaeIII | GTNAC | 2 cut(s) | 473, 536 |
| MalI | GATC | 5 cut(s) | 135, 188, 340, 417, 550 |
| MboI | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| MboII | GAAGA | 2 cut(s) | 428, 493 |
| MflI | RGATCY | 4 cut(s) | 133, 186, 338, 548 |
| MhlI | GDGCHC | 6 cut(s) | 164, 262, 306, 456, 508, 570 |
| MluCI | AATT | 1 cut(s) | 352 |
| MroI | TCCGGA | 1 cut(s) | 584 |
| MroXI | GAANNNNTTC | 1 cut(s) | 316 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 2 cut(s) | 53, 199 |
| MspI | CCGG | 1 cut(s) | 585 |
| MspR9I | CCNGG | 2 cut(s) | 94, 422 |
| MvaI | CCWGG | 2 cut(s) | 94, 422 |
| NcoI | CCATGG | 1 cut(s) | 306 |
| NdeII | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| NlaIII | CATG | 3 cut(s) | 73, 310, 512 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 245, 340, 361 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 462 |
| PdmI | GAANNNNTTC | 1 cut(s) | 316 |
| PfeI | GAWTC | 3 cut(s) | 100, 123, 178 |
| PkrI | GCNGC | 3 cut(s) | 52, 295, 592 |
| Psp124BI | GAGCTC | 1 cut(s) | 570 |
| Psp6I | CCWGG | 2 cut(s) | 92, 420 |
| PspEI | GGTNACC | 1 cut(s) | 473 |
| PspGI | CCWGG | 2 cut(s) | 92, 420 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 245, 340, 361 |
| PspPI | GGNCC | 1 cut(s) | 360 |
| PsuI | RGATCY | 4 cut(s) | 133, 186, 338, 548 |
| PvuII | CAGCTG | 2 cut(s) | 53, 199 |
| RsaI | GTAC | 2 cut(s) | 91, 328 |
| RsaNI | GTAC | 2 cut(s) | 90, 327 |
| SacI | GAGCTC | 1 cut(s) | 570 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 3 cut(s) | 51, 294, 591 |
| Sau3AI | GATC | 5 cut(s) | 133, 186, 338, 415, 548 |
| Sau96I | GGNCC | 1 cut(s) | 360 |
| ScrFI | CCNGG | 2 cut(s) | 94, 422 |
| SduI | GDGCHC | 6 cut(s) | 164, 262, 306, 456, 508, 570 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 1 cut(s) | 360 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 3 cut(s) | 128, 261, 563 |
| SmoI | CTYRAG | 3 cut(s) | 128, 261, 563 |
| SpeI | ACTAGT | 2 cut(s) | 314, 365 |
| Sse9I | AATT | 1 cut(s) | 352 |
| SsiI | CCGC | 1 cut(s) | 534 |
| SspMI | CTAG | 3 cut(s) | 315, 366, 598 |
| SstI | GAGCTC | 1 cut(s) | 570 |
| StyD4I | CCNGG | 2 cut(s) | 92, 420 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| TaaI | ACNGT | 1 cut(s) | 545 |
| TaiI | ACGT | 2 cut(s) | 255, 468 |
| TaqI | TCGA | 1 cut(s) | 262 |
| TasI | AATT | 1 cut(s) | 352 |
| TfiI | GAWTC | 3 cut(s) | 100, 123, 178 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 2 cut(s) | 306, 529 |
| TseI | GCWGC | 3 cut(s) | 50, 293, 590 |
| TspDTI | ATGAA | 1 cut(s) | 290 |
| TspRI | CASTG | 2 cut(s) | 306, 529 |
| VneI | GTGCAC | 2 cut(s) | 452, 504 |
| VpaK11BI | GGWCC | 1 cut(s) | 360 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 316 |
| XspI | CTAG | 3 cut(s) | 315, 366, 598 |
| ZraI | GACGTC | 1 cut(s) | 466 |