Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 37 |
| AciI | CCGC | 3 cut(s) | 132, 609, 625 |
| AclWI | GGATC | 1 cut(s) | 472 |
| AcuI | CTGAAG | 1 cut(s) | 578 |
| AfaI | GTAC | 1 cut(s) | 509 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 299, 302, 608, 624 |
| AgeI | ACCGGT | 1 cut(s) | 338 |
| AgsI | TTSAA | 5 cut(s) | 37, 187, 389, 397, 643 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 40, 72 |
| AluBI | AGCT | 6 cut(s) | 85, 139, 333, 521, 556, 565 |
| AluI | AGCT | 6 cut(s) | 85, 139, 333, 521, 556, 565 |
| AlwI | GGATC | 1 cut(s) | 472 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 744 |
| Ama87I | CYCGRG | 1 cut(s) | 296 |
| AoxI | GGCC | 1 cut(s) | 70 |
| ApeKI | GCWGC | 2 cut(s) | 744, 753 |
| AsiGI | ACCGGT | 1 cut(s) | 338 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 258 |
| AsuC2I | CCSGG | 2 cut(s) | 297, 298 |
| AsuII | TTCGAA | 1 cut(s) | 279 |
| AvaI | CYCGRG | 1 cut(s) | 296 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 522, 554 |
| BbvI | GCAGC | 2 cut(s) | 731, 740 |
| BccI | CCATC | 2 cut(s) | 50, 271 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BclI | TGATCA | 2 cut(s) | 679, 735 |
| BcnI | CCSGG | 2 cut(s) | 297, 298 |
| BisI | GCNGC | 3 cut(s) | 610, 745, 754 |
| BlpI | GCTNAGC | 2 cut(s) | 86, 135 |
| BlsI | GCNGC | 3 cut(s) | 611, 746, 755 |
| Bme1390I | CCNGG | 3 cut(s) | 74, 297, 298 |
| BmeT110I | CYCGRG | 1 cut(s) | 296 |
| BmrFI | CCNGG | 3 cut(s) | 74, 297, 298 |
| BmsI | GCATC | 1 cut(s) | 417 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 86, 135 |
| Bpu14I | TTCGAA | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 2 cut(s) | 11, 143 |
| BpuMI | CCSGG | 2 cut(s) | 297, 298 |
| BsaJI | CCNNGG | 3 cut(s) | 296, 297, 485 |
| BsaWI | WCCGGW | 1 cut(s) | 338 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 299, 302, 608, 624 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| Bse3DI | GCAATG | 1 cut(s) | 655 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 3 cut(s) | 296, 297, 485 |
| BseGI | GGATG | 2 cut(s) | 42, 169 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 299, 302, 608, 624 |
| BseMI | GCAATG | 1 cut(s) | 655 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseRI | GAGGAG | 1 cut(s) | 531 |
| BseXI | GCAGC | 2 cut(s) | 731, 740 |
| BsgI | GTGCAG | 1 cut(s) | 683 |
| BshFI | GGCC | 1 cut(s) | 72 |
| BshTI | ACCGGT | 1 cut(s) | 338 |
| BsiHKCI | CYCGRG | 1 cut(s) | 296 |
| BsiSI | CCGG | 2 cut(s) | 297, 339 |
| BslFI | GGGAC | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 299, 302, 608, 624 |
| BsmFI | GGGAC | 1 cut(s) | 431 |
| BsnI | GGCC | 1 cut(s) | 72 |
| BsoBI | CYCGRG | 1 cut(s) | 296 |
| Bsp119I | TTCGAA | 1 cut(s) | 279 |
| Bsp143I | GATC | 3 cut(s) | 477, 679, 735 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 86, 135 |
| BspACI | CCGC | 3 cut(s) | 132, 609, 625 |
| BspANI | GGCC | 1 cut(s) | 72 |
| BspCNI | CTCAG | 1 cut(s) | 127 |
| BspHI | TCATGA | 2 cut(s) | 541, 682 |
| BspPI | GGATC | 1 cut(s) | 472 |
| BspT104I | TTCGAA | 1 cut(s) | 279 |
| BsrDI | GCAATG | 1 cut(s) | 655 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssECI | CCNNGG | 3 cut(s) | 296, 297, 485 |
| BssMI | GATC | 3 cut(s) | 477, 679, 735 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 406, 677 |
| Bst6I | CTCTTC | 2 cut(s) | 276, 441 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 753 |
| BstBI | TTCGAA | 1 cut(s) | 279 |
| BstDEI | CTNAG | 3 cut(s) | 86, 135, 568 |
| BstF5I | GGATG | 2 cut(s) | 42, 169 |
| BstKTI | GATC | 3 cut(s) | 480, 682, 738 |
| BstMBI | GATC | 3 cut(s) | 477, 679, 735 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 544, 553, 562, 645, 750, 753 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstSCI | CCNGG | 3 cut(s) | 72, 295, 296 |
| BstV1I | GCAGC | 2 cut(s) | 731, 740 |
| BsuRI | GGCC | 1 cut(s) | 72 |
| BtsCI | GGATG | 2 cut(s) | 42, 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 682 |
| CaiI | CAGNNNCTG | 1 cut(s) | 744 |
| CciI | TCATGA | 2 cut(s) | 541, 682 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr9I | CCCGGG | 1 cut(s) | 296 |
| Csp6I | GTAC | 1 cut(s) | 508 |
| CspAI | ACCGGT | 1 cut(s) | 338 |
| CviAII | CATG | 6 cut(s) | 68, 433, 542, 603, 622, 683 |
| CviQI | GTAC | 1 cut(s) | 508 |
| DdeI | CTNAG | 3 cut(s) | 86, 135, 568 |
| DpnI | GATC | 3 cut(s) | 479, 681, 737 |
| DpnII | GATC | 3 cut(s) | 477, 679, 735 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 37 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 37 |
| Eam1104I | CTCTTC | 2 cut(s) | 276, 441 |
| EarI | CTCTTC | 2 cut(s) | 276, 441 |
| Eco57I | CTGAAG | 1 cut(s) | 578 |
| Eco88I | CYCGRG | 1 cut(s) | 296 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| FaeI | CATG | 6 cut(s) | 71, 436, 545, 606, 625, 686 |
| FaiI | YATR | 6 cut(s) | 69, 434, 543, 604, 623, 684 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 551, 583 |
| FaqI | GGGAC | 1 cut(s) | 431 |
| FatI | CATG | 6 cut(s) | 67, 432, 541, 602, 621, 682 |
| FbaI | TGATCA | 2 cut(s) | 679, 735 |
| Fnu4HI | GCNGC | 3 cut(s) | 610, 745, 754 |
| FokI | GGATG | 2 cut(s) | 29, 176 |
| Fsp4HI | GCNGC | 3 cut(s) | 610, 745, 754 |
| GluI | GCNGC | 3 cut(s) | 610, 745, 754 |
| HaeIII | GGCC | 1 cut(s) | 72 |
| HapII | CCGG | 2 cut(s) | 297, 339 |
| Hin1II | CATG | 6 cut(s) | 71, 436, 545, 606, 625, 686 |
| HindIII | AAGCTT | 1 cut(s) | 331 |
| HinfI | GANTC | 4 cut(s) | 118, 308, 576, 596 |
| HpaII | CCGG | 2 cut(s) | 297, 339 |
| Hpy166II | GTNNAC | 1 cut(s) | 293 |
| Hpy188I | TCNGA | 7 cut(s) | 65, 114, 347, 377, 486, 595, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 28, 542, 683 |
| Hpy8I | GTNNAC | 1 cut(s) | 293 |
| HpyAV | CCTTC | 2 cut(s) | 269, 566 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 406, 677 |
| HpyCH4IV | ACGT | 2 cut(s) | 420, 702 |
| HpyCH4V | TGCA | 8 cut(s) | 366, 409, 430, 648, 671, 700, 713, 747 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 544, 553, 562, 645, 750, 753 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 135, 568 |
| HpySE526I | ACGT | 2 cut(s) | 420, 702 |
| Hsp92II | CATG | 6 cut(s) | 71, 436, 545, 606, 625, 686 |
| Ksp22I | TGATCA | 2 cut(s) | 679, 735 |
| Kzo9I | GATC | 3 cut(s) | 477, 679, 735 |
| LmnI | GCTCC | 1 cut(s) | 518 |
| LpnPI | CCDG | 7 cut(s) | 59, 86, 310, 352, 427, 602, 724 |
| Lsp1109I | GCAGC | 2 cut(s) | 731, 740 |
| LweI | GCATC | 1 cut(s) | 417 |
| MaeII | ACGT | 2 cut(s) | 420, 702 |
| MaeIII | GTNAC | 3 cut(s) | 208, 400, 719 |
| MalI | GATC | 3 cut(s) | 479, 681, 737 |
| MboI | GATC | 3 cut(s) | 477, 679, 735 |
| MboII | GAAGA | 7 cut(s) | 127, 179, 248, 293, 458, 469, 571 |
| MfeI | CAATTG | 1 cut(s) | 643 |
| MluCI | AATT | 3 cut(s) | 51, 176, 643 |
| MlyI | GAGTC | 1 cut(s) | 302 |
| MroXI | GAANNNNTTC | 1 cut(s) | 258 |
| MseI | TTAA | 2 cut(s) | 147, 705 |
| MslI | CAYNNNNRTG | 1 cut(s) | 687 |
| MspA1I | CMGCKG | 1 cut(s) | 134 |
| MspI | CCGG | 2 cut(s) | 297, 339 |
| MspR9I | CCNGG | 3 cut(s) | 74, 297, 298 |
| MunI | CAATTG | 1 cut(s) | 643 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 544, 553, 562, 645, 750, 753 |
| NciI | CCSGG | 2 cut(s) | 297, 298 |
| NdeII | GATC | 3 cut(s) | 477, 679, 735 |
| NlaIII | CATG | 6 cut(s) | 71, 436, 545, 606, 625, 686 |
| NspI | RCATGY | 1 cut(s) | 625 |
| NspV | TTCGAA | 1 cut(s) | 279 |
| PagI | TCATGA | 2 cut(s) | 541, 682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 3 cut(s) | 118, 576, 596 |
| PflFI | GACNNNGTC | 1 cut(s) | 311 |
| PinAI | ACCGGT | 1 cut(s) | 338 |
| PkrI | GCNGC | 3 cut(s) | 611, 746, 755 |
| PleI | GAGTC | 1 cut(s) | 302 |
| PpsI | GAGTC | 1 cut(s) | 302 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PstNI | CAGNNNCTG | 1 cut(s) | 744 |
| PsyI | GACNNNGTC | 1 cut(s) | 311 |
| RsaI | GTAC | 1 cut(s) | 509 |
| RsaNI | GTAC | 1 cut(s) | 508 |
| RseI | CAYNNNNRTG | 1 cut(s) | 687 |
| SaqAI | TTAA | 2 cut(s) | 147, 705 |
| SatI | GCNGC | 3 cut(s) | 610, 745, 754 |
| Sau3AI | GATC | 3 cut(s) | 477, 679, 735 |
| SchI | GAGTC | 1 cut(s) | 302 |
| ScrFI | CCNGG | 3 cut(s) | 74, 297, 298 |
| SfaNI | GCATC | 1 cut(s) | 417 |
| SfuI | TTCGAA | 1 cut(s) | 279 |
| SmaI | CCCGGG | 1 cut(s) | 298 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 687 |
| SmlI | CTYRAG | 2 cut(s) | 26, 158 |
| SmoI | CTYRAG | 2 cut(s) | 26, 158 |
| Sse9I | AATT | 3 cut(s) | 51, 176, 643 |
| SsiI | CCGC | 3 cut(s) | 132, 609, 625 |
| StyD4I | CCNGG | 3 cut(s) | 72, 295, 296 |
| TaaI | ACNGT | 3 cut(s) | 125, 406, 677 |
| TaiI | ACGT | 2 cut(s) | 423, 705 |
| TaqI | TCGA | 3 cut(s) | 279, 425, 658 |
| TasI | AATT | 3 cut(s) | 51, 176, 643 |
| TauI | GCSGC | 1 cut(s) | 612 |
| TfiI | GAWTC | 3 cut(s) | 118, 576, 596 |
| Tru1I | TTAA | 2 cut(s) | 147, 705 |
| Tru9I | TTAA | 2 cut(s) | 147, 705 |
| TscAI | CASTG | 1 cut(s) | 682 |
| TseI | GCWGC | 2 cut(s) | 744, 753 |
| TspDTI | ATGAA | 6 cut(s) | 180, 484, 530, 540, 699, 708 |
| TspMI | CCCGGG | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 682 |
| Tth111I | GACNNNGTC | 1 cut(s) | 311 |
| XceI | RCATGY | 1 cut(s) | 625 |
| XmaI | CCCGGG | 1 cut(s) | 296 |
| XmnI | GAANNNNTTC | 1 cut(s) | 258 |