Rorug01G0096100
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000322
Physical Location & Seq
Forward (+)
15922683 .. 15933873
11191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0096100.1

Sequence Viewer

Length: 2748 bp
ATGGGTTCTTCAAATCCCGAAGGAGCCGAACTCCCCCCTCCTCCGCCCATTCCGCCAAATGTTGTCCCAATTGTAGCAGGAGAAAAACCTCTTGAACTAATTAACAAACCATCTCCTCCAAAACGTGTTCCCATGAAAAGGCCTGGCATTGGATCTAAAGGTCAAAGCATTTCACTTCTTACCAACCATTTCAAAGTGGGATTGAACAAATCTAATGTTGAGTTTTACCATTATAGTATTGCCATGCAATATGATGATGGAACCGAAGTTGACGGGAAAGGCATTGGACGTAAGGTTCTTGACAAAGTAAAAGACACATATAGTGTGGAGCTGGAAAACAAGGATTTTGCTTATGATGGAGAGAAGAGCTTGTTTACTGTTGGGCAGCTCCCTCATAAAAAACTTGATTTCACAGTAGTACTGGATGACATATCATCAAGCAGGTCTAGGACGAATGGGGGATCTGGAGGCAGTTACTCCCTAGAAGAGAGTCAGGGCGATAGGAAGAGAGTCAAGCAGTCATTTCAATCCAAAACAATAAAGGTACAGGTCAACTTTGCTGCTAAAATCCCAATGCAAGCAATCGCGAATGCCTTGCGAGGTCAGGACTCTGACCATTTTCAGGAAGCAGTTAGAGTTCTTGACATCATTATACGGCAGAATGCAGCAAAGCAGGGTTGTCTCCTTGTTCGGCAGTCTTTCTTCCATAACAACCCGAGGAACTTCATAGAGTTGGGAGGAGGGGTGTTAGGCTGCAGGGGTTTCCATTCAAGCTTCCGGGCCACGCAAGGCGGCCTATCTCTGAATATGGATGTATCCACTACAATGATTGTAAAACCTGGTCCTGTTTTGAATTTCCTCATGGAGAACCAGAATGTCAAAACTCCTTACCAGATTGATTGGAATAAGGCTAAGAGGATGCTAAAAAATCTAAAGGTTGAGACCTATGCTTCCAAGATGGAGTACAAAATCACTGGATTGAGTGATAAACCCTGCAAACAGCAGACGTTCTTTTTGAAATCAAAAGGAGGACAGGATGGAGACGGAGAAGAGATCACTGTTTATGAGTACTTTGCCCAGCATAAGCACATGCAGTTACGCGATTCAGCAGATTTTCCCTGCATCAATGTTGGAAAACCAAAGAAACCTTCTTACTTTCCTCTTGAGCTTTGTAATTTGGTTTCCTTGCAACGCTATACCAAGGCTTTATCCAATCTCCAAAGGGCTTCACTAGTGGAGAAGTCTCGGCAAAAACCCCAAGAGCGAATGTCAACTTTGCGTGATGCACTGAAGAGTAGTAAATATGAGGCTGACATGATGCTTCATTCTTCTGGAATATCGATTGGTACAGAATTTATGCAGGTTGAAGGCCGTGTTTTGTCAGCCCCAAGGTTGAAAGTGGGAAATGGAGAGGATTTTTCTCCTCGGAATGGGAGATGGAATTTCAACAATAAGAAATTAGTAGAACCTGTAAAACTAGAGCACTGGGCTGTTGTAAATTTCTCTGCTCGCTGTGACGTTCGCTTCCTGGTCAACACTATGATAAAGTGTGGAGGCATGAAAGGAATTTCCATCAACCCTCCGTTTGATGTGTTTGAAGAGAGCATTCAGAATAGACGTGAGTCAGCTCTGAGTAGAGTAGAAAAGATGTTTGAATATATTAAGTCCAAACTTCCGGGACCACCTCAGTTTTTGTTGTGCATTCTTCCAGAGAGGAAGAATTCTGACATATATGGTCCATGGAAAAGGAAAAACCTTTCAGACGTTGGGATTGTAACACAGTGTATTGCACCAACTAAAGTGAATGATCAATACATCACAAATGTGCTCCTGAAAATTAATACAAAGCTTGATGGAACCAACTCCTTGCTAATGGTGGAGCATTTTCCTTCTCTTCCCTTGGTTTCCAAGTCCCCCACTCTGATTTTAGGGATGGATGTGTCACATGGGTCACCTGGACGTTCCGATGTGCCTTCTATTGCAGCGGTGGTCAGTTCCAGGAAATGGCCTTTGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAATCACCAAAAGTAGAAATGATTGCTAATCTGTTCAAGCCTGTGTCTGATAAAGAGGACCAAGGCATAATCAAGGAACTTTTGTTAGACTTTTATACTACTTCAAACAACAGGAAGCCAGAACAGATAATTATTTTCAGGGATGGAGTGAGTGAGTCACAGTTCAACCAAGTCTTGAATGTAGAATTGGATCAGATTATTGAGGCCTGCAAGTTTCTTGACGAGAGCTGGTGTCCAAAGTTCATGGTTATTATTGCACAAAAGAATCATCATACAAAATTTTTTCAGGCTGGTGGTTCTCCTGACAATGTTCCACCTGGGACTATTATTGACAACAAAGTCTGTCATCCAAAGAACAATGATTTCTACTTATGTTCTCATGCTGGGATGATTGGAACAACTCGTCCTACTCATTATCATGTTCTATATGATGAACTTGGCTTCTCAGCGGATGACTTGCAAGAACTTGTTCATTCTTTATCATATGTTTACCAAAGGAGCACAACGGCCATATCTGTAGTTGCTCCGGTATGCTATGCCCATCTAGCAGCAGCACAGATGAGTCAGTTTATTAAGTTCGATGAAATATCAGAGACTGCTTCAAGCCAAGGTGGTTCTGGTGGTGTTACTGTTGCTGGAGCTGTGCCAGTGCAGGAGTTACCAAGGCTACATGAAAGTGTCGTCAACTCCATGTTCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000160 GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006807 GO:0006809 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009867 GO:0009873 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010154 GO:0010193 GO:0010228 GO:0012501 GO:0017144 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0032501 GO:0032502 GO:0032870 GO:0034641 GO:0035556 GO:0042133 GO:0042136 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045087 GO:0046209 GO:0046677 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0072593 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903409 GO:1905392 GO:2000377 GO:2001057
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

915

Amino Acids

102.03

Weight (kDa)

9.06

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 55 - 218 2e-26 N-terminal domain of argonaute
ArgoL1 PF08699 230 - 279 2.3e-18 Argonaute linker 1 domain
PAZ PF02170 284 - 411 2.2e-28 PAZ domain
ArgoL2 PF16488 421 - 466 6.7e-09 Argonaute linker 2 domain
ArgoMid PF16487 474 - 527 2.6e-06 Mid domain of argonaute
Piwi PF02171 565 - 873 6.1e-106 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2381
Acc36I ACCTGC 2 cut(s) 432, 1351
AccB7I CCANNNNNTGG 1 cut(s) 2004
AccII CGCG 2 cut(s) 587, 1101
AciI CCGC 5 cut(s) 44, 53, 792, 1985, 2492
AclWI GGATC 3 cut(s) 160, 469, 2241
AcoI YGGCCR 1 cut(s) 2550
AcsI RAATTY 7 cut(s) 853, 1352, 1441, 1498, 1566, 1720, 2321
AcuI CTGAAG 1 cut(s) 1310
AfaI GTAC 6 cut(s) 420, 546, 965, 1070, 1348, 2041
AfiI CCNNNNNNNGG 5 cut(s) 138, 149, 622, 1430, 2004
AflIII ACRYGT 1 cut(s) 124
AhlI ACTAGT 1 cut(s) 1231
AjiI CACGTC 1 cut(s) 1619
AjnI CCWGG 6 cut(s) 142, 838, 1527, 1954, 1997, 2359
AjuI GAANNNNNNNTTGG 4 cut(s) 1132, 1164, 2213, 2245
AleI CACNNNNGTG 1 cut(s) 1823
AloI GAACNNNNNNTCC 4 cut(s) 279, 311, 2431, 2463
Alw21I GWGCWC 3 cut(s) 1485, 1830, 2546
Alw26I GTCTC 5 cut(s) 686, 935, 1035, 1248, 2630
AlwI GGATC 3 cut(s) 160, 469, 2241
AlwNI CAGNNNCTG 1 cut(s) 2639
Ama87I CYCGRG 1 cut(s) 715
AoxI GGCC 7 cut(s) 140, 780, 793, 1369, 2006, 2247, 2550
ApeKI GCWGC 8 cut(s) 385, 560, 665, 753, 1982, 2030, 2591, 2594
ApoI RAATTY 7 cut(s) 853, 1352, 1441, 1498, 1566, 1720, 2321
ArsI GACNNNNNNTTYG 2 cut(s) 997, 1029
AseI ATTAAT 1 cut(s) 1839
Asp700I GAANNNNTTC 1 cut(s) 2511
AspS9I GGNCC 5 cut(s) 780, 842, 1679, 1736, 2101
AsuC2I CCSGG 2 cut(s) 779, 1677
AsuHPI GGTGA 2 cut(s) 1944, 2040
AvaI CYCGRG 1 cut(s) 715
AvaII GGWCC 4 cut(s) 842, 1679, 1736, 2101
Bbv12I GWGCWC 3 cut(s) 1485, 1830, 2546
BbvI GCAGC 8 cut(s) 397, 547, 677, 740, 1994, 2017, 2603, 2606
BceAI ACGGC 3 cut(s) 671, 1356, 2565
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 6 cut(s) 144, 840, 1529, 1956, 1999, 2361
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 1 cut(s) 1807
BcnI CCSGG 2 cut(s) 779, 1677
BcoDI GTCTC 5 cut(s) 686, 935, 1035, 1248, 2630
BcuI ACTAGT 1 cut(s) 1231
BfaI CTAG 5 cut(s) 447, 482, 1232, 1478, 2588
BfmI CTRYAG 3 cut(s) 754, 2031, 2559
BfuAI ACCTGC 2 cut(s) 432, 1351
BfuI GTATCC 1 cut(s) 826
BisI GCNGC 9 cut(s) 386, 561, 666, 754, 793, 1983, 2031, 2592, 2595
BlsI GCNGC 9 cut(s) 387, 562, 667, 755, 794, 1984, 2032, 2593, 2596
BmcAI AGTACT 2 cut(s) 420, 1070
Bme1390I CCNGG 8 cut(s) 144, 779, 840, 1529, 1677, 1956, 1999, 2361
Bme18I GGWCC 4 cut(s) 842, 1679, 1736, 2101
BmeT110I CYCGRG 1 cut(s) 715
BmgBI CACGTC 1 cut(s) 1619
BmgT120I GGNCC 5 cut(s) 780, 842, 1679, 1736, 2101
BmiI GGNNCC 4 cut(s) 25, 262, 1680, 1858
BmrFI CCNGG 8 cut(s) 144, 779, 840, 1529, 1677, 1956, 1999, 2361
BmrI ACTGGG 1 cut(s) 1495
BmsI GCATC 4 cut(s) 909, 1131, 1273, 1308
BmuI ACTGGG 1 cut(s) 1495
BoxI GACNNNNGTC 1 cut(s) 1621
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 2 cut(s) 486, 2700
BpuEI CTTGAG 1 cut(s) 1184
BpuMI CCSGG 2 cut(s) 779, 1677
Bsa29I ATCGAT 1 cut(s) 1340
BsaI GGTCTC 1 cut(s) 935
BsaWI WCCGGW 1 cut(s) 2569
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 149, 622, 1430, 2004
Bse1I ACTGG 4 cut(s) 426, 979, 1490, 2690
BseBI CCWGG 6 cut(s) 144, 840, 1529, 1956, 1999, 2361
BseCI ATCGAT 1 cut(s) 1340
BseLI CCNNNNNNNGG 5 cut(s) 138, 149, 622, 1430, 2004
BseMII CTCAG 3 cut(s) 1622, 1700, 2502
BseNI ACTGG 4 cut(s) 426, 979, 1490, 2690
BseRI GAGGAG 4 cut(s) 30, 105, 753, 1413
BseXI GCAGC 8 cut(s) 397, 547, 677, 740, 1994, 2017, 2603, 2606
BseYI CCCAGC 2 cut(s) 1077, 2426
BsgI GTGCAG 1 cut(s) 2714
Bsh1236I CGCG 2 cut(s) 587, 1101
BshFI GGCC 7 cut(s) 142, 782, 795, 1371, 2008, 2249, 2552
BshVI ATCGAT 1 cut(s) 1340
BsiHKAI GWGCWC 3 cut(s) 1485, 1830, 2546
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 3 cut(s) 778, 1676, 2570
BslFI GGGAC 4 cut(s) 50, 1692, 1897, 2377
BslI CCNNNNNNNGG 5 cut(s) 138, 149, 622, 1430, 2004
BsmAI GTCTC 5 cut(s) 686, 935, 1035, 1248, 2630
BsmBI CGTCTC 1 cut(s) 1035
BsmFI GGGAC 4 cut(s) 50, 1692, 1897, 2377
BsmI GAATGC 4 cut(s) 595, 667, 1605, 1701
BsnI GGCC 7 cut(s) 142, 782, 795, 1371, 2008, 2249, 2552
Bso31I GGTCTC 1 cut(s) 935
BsoBI CYCGRG 1 cut(s) 715
Bsp1286I GDGCHC 3 cut(s) 1485, 1830, 2546
Bsp143I GATC 5 cut(s) 152, 461, 1053, 1807, 2233
Bsp19I CCATGG 1 cut(s) 1739
Bsp68I TCGCGA 1 cut(s) 587
BspACI CCGC 5 cut(s) 44, 53, 792, 1985, 2492
BspANI GGCC 7 cut(s) 142, 782, 795, 1371, 2008, 2249, 2552
BspCNI CTCAG 3 cut(s) 1623, 1699, 2501
BspDI ATCGAT 1 cut(s) 1340
BspFNI CGCG 2 cut(s) 587, 1101
BspLI GGNNCC 4 cut(s) 25, 262, 1680, 1858
BspMAI CTGCAG 2 cut(s) 758, 2035
BspMI ACCTGC 2 cut(s) 432, 1351
BspPI GGATC 3 cut(s) 160, 469, 2241
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 935
BsrI ACTGG 4 cut(s) 426, 979, 1490, 2690
BssMI GATC 5 cut(s) 152, 461, 1053, 1807, 2233
BssT1I CCWWGG 7 cut(s) 1200, 1388, 1739, 1899, 2104, 2650, 2705
Bst2UI CCWGG 6 cut(s) 144, 840, 1529, 1956, 1999, 2361
Bst4CI ACNGT 6 cut(s) 379, 415, 1060, 1782, 2205, 2674
Bst6I CTCTTC 7 cut(s) 359, 480, 500, 1044, 1286, 1593, 1899
BstC8I GCNNGC 3 cut(s) 579, 1510, 2251
BstDEI CTNAG 4 cut(s) 912, 1631, 1686, 2488
BstDSI CCRYGG 1 cut(s) 1739
BstEII GGTNACC 1 cut(s) 1950
BstFNI CGCG 2 cut(s) 587, 1101
BstKTI GATC 5 cut(s) 155, 464, 1056, 1810, 2236
BstMAI GTCTC 5 cut(s) 686, 935, 1035, 1248, 2630
BstMBI GATC 5 cut(s) 152, 461, 1053, 1807, 2233
BstMWI GCNNNNNNNGC 2 cut(s) 52, 2588
BstNI CCWGG 6 cut(s) 144, 840, 1529, 1956, 1999, 2361
BstNSI RCATGY 1 cut(s) 1093
BstPAI GACNNNNGTC 1 cut(s) 1621
BstPI GGTNACC 1 cut(s) 1950
BstSCI CCNGG 8 cut(s) 142, 777, 838, 1527, 1675, 1954, 1997, 2359
BstSFI CTRYAG 3 cut(s) 754, 2031, 2559
BstUI CGCG 2 cut(s) 587, 1101
BstV1I GCAGC 8 cut(s) 397, 547, 677, 740, 1994, 2017, 2603, 2606
BstX2I RGATCY 2 cut(s) 152, 461
BstYI RGATCY 2 cut(s) 152, 461
Bsu15I ATCGAT 1 cut(s) 1340
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 7 cut(s) 142, 782, 795, 1371, 2008, 2249, 2552
BsuTUI ATCGAT 1 cut(s) 1340
BtgI CCRYGG 1 cut(s) 1739
BtrI CACGTC 1 cut(s) 1619
BtsIMutI CAGTG 6 cut(s) 972, 1056, 1286, 1483, 1787, 2697
BtuMI TCGCGA 1 cut(s) 587
BveI ACCTGC 2 cut(s) 432, 1351
Cac8I GCNNGC 3 cut(s) 579, 1510, 2251
CaiI CAGNNNCTG 1 cut(s) 2639
Cfr13I GGNCC 5 cut(s) 780, 842, 1679, 1736, 2101
ClaI ATCGAT 1 cut(s) 1340
CsiI ACCWGGT 1 cut(s) 838
Csp6I GTAC 6 cut(s) 419, 545, 964, 1069, 1347, 2040
CviQI GTAC 6 cut(s) 419, 545, 964, 1069, 1347, 2040
DdeI CTNAG 4 cut(s) 912, 1631, 1686, 2488
DpnI GATC 5 cut(s) 154, 463, 1055, 1809, 2235
DpnII GATC 5 cut(s) 152, 461, 1053, 1807, 2233
DrdI GACNNNNNNGTC 1 cut(s) 2381
DseDI GACNNNNNNGTC 1 cut(s) 2381
EaeI YGGCCR 1 cut(s) 2550
Eam1104I CTCTTC 7 cut(s) 359, 480, 500, 1044, 1286, 1593, 1899
EarI CTCTTC 7 cut(s) 359, 480, 500, 1044, 1286, 1593, 1899
EciI GGCGGA 2 cut(s) 33, 42
Eco130I CCWWGG 7 cut(s) 1200, 1388, 1739, 1899, 2104, 2650, 2705
Eco147I AGGCCT 2 cut(s) 142, 2249
Eco31I GGTCTC 1 cut(s) 935
Eco47I GGWCC 4 cut(s) 842, 1679, 1736, 2101
Eco57I CTGAAG 1 cut(s) 1310
Eco88I CYCGRG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 1950
EcoO65I GGTNACC 1 cut(s) 1950
EcoRI GAATTC 1 cut(s) 1720
EcoRII CCWGG 6 cut(s) 142, 838, 1527, 1954, 1997, 2359
EcoT14I CCWWGG 7 cut(s) 1200, 1388, 1739, 1899, 2104, 2650, 2705
ErhI CCWWGG 7 cut(s) 1200, 1388, 1739, 1899, 2104, 2650, 2705
Esp3I CGTCTC 1 cut(s) 1035
FaqI GGGAC 4 cut(s) 50, 1692, 1897, 2377
FauNDI CATATG 1 cut(s) 2527
FbaI TGATCA 1 cut(s) 1807
Fnu4HI GCNGC 9 cut(s) 386, 561, 666, 754, 793, 1983, 2031, 2592, 2595
Fsp4HI GCNGC 9 cut(s) 386, 561, 666, 754, 793, 1983, 2031, 2592, 2595
FspBI CTAG 5 cut(s) 447, 482, 1232, 1478, 2588
GluI GCNGC 9 cut(s) 386, 561, 666, 754, 793, 1983, 2031, 2592, 2595
GsaI CCCAGC 2 cut(s) 1081, 2430
GsuI CTGGAG 2 cut(s) 486, 2700
HaeIII GGCC 7 cut(s) 142, 782, 795, 1371, 2008, 2249, 2552
HapII CCGG 3 cut(s) 778, 1676, 2570
HincII GTYRAC 5 cut(s) 271, 553, 1272, 1534, 2728
HindII GTYRAC 5 cut(s) 271, 553, 1272, 1534, 2728
HindIII AAGCTT 2 cut(s) 772, 1847
HinfI GANTC 8 cut(s) 490, 510, 608, 1103, 1622, 2198, 2308, 2605
HpaII CCGG 3 cut(s) 778, 1676, 2570
HphI GGTGA 2 cut(s) 1944, 2040
Hpy166II GTNNAC 7 cut(s) 271, 375, 553, 1272, 1534, 2533, 2728
Hpy8I GTNNAC 7 cut(s) 271, 375, 553, 1272, 1534, 2533, 2728
HpyAV CCTTC 5 cut(s) 14, 1158, 1361, 1899, 1983
HpyCH4III ACNGT 6 cut(s) 379, 415, 1060, 1782, 2205, 2674
HpyCH4IV ACGT 7 cut(s) 124, 289, 1007, 1518, 1618, 1764, 1960
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 2588
HpyF3I CTNAG 4 cut(s) 912, 1631, 1686, 2488
HpySE526I ACGT 7 cut(s) 124, 289, 1007, 1518, 1618, 1764, 1960
Ksp22I TGATCA 1 cut(s) 1807
Kzo9I GATC 5 cut(s) 152, 461, 1053, 1807, 2233
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 8 cut(s) 23, 328, 393, 1833, 1879, 2541, 2572, 2681
Lsp1109I GCAGC 8 cut(s) 397, 547, 677, 740, 1994, 2017, 2603, 2606
LweI GCATC 4 cut(s) 909, 1131, 1273, 1308
MabI ACCWGGT 1 cut(s) 838
MaeI CTAG 5 cut(s) 447, 482, 1232, 1478, 2588
MaeII ACGT 7 cut(s) 124, 289, 1007, 1518, 1618, 1764, 1960
MalI GATC 5 cut(s) 154, 463, 1055, 1809, 2235
MboI GATC 5 cut(s) 152, 461, 1053, 1807, 2233
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 152, 461
MhlI GDGCHC 3 cut(s) 1485, 1830, 2546
MlyI GAGTC 6 cut(s) 499, 519, 602, 1631, 2207, 2614
MmeI TCCRAC 1 cut(s) 1111
MroXI GAANNNNTTC 1 cut(s) 2511
MseI TTAA 4 cut(s) 102, 1662, 1839, 2616
MslI CAYNNNNRTG 4 cut(s) 824, 1823, 2460, 2718
MspA1I CMGCKG 2 cut(s) 1985, 2492
MspI CCGG 3 cut(s) 778, 1676, 2570
MspR9I CCNGG 8 cut(s) 144, 779, 840, 1529, 1677, 1956, 1999, 2361
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 4 cut(s) 595, 667, 1605, 1701
MvaI CCWGG 6 cut(s) 144, 840, 1529, 1956, 1999, 2361
MvnI CGCG 2 cut(s) 587, 1101
MwoI GCNNNNNNNGC 2 cut(s) 52, 2588
NciI CCSGG 2 cut(s) 779, 1677
NcoI CCATGG 1 cut(s) 1739
NdeI CATATG 1 cut(s) 2527
NdeII GATC 5 cut(s) 152, 461, 1053, 1807, 2233
NlaIV GGNNCC 4 cut(s) 25, 262, 1680, 1858
NmeAIII GCCGAG 1 cut(s) 1225
NmuCI GTSAC 4 cut(s) 1514, 1941, 1950, 2199
NruI TCGCGA 1 cut(s) 587
NspI RCATGY 1 cut(s) 1093
OliI CACNNNNGTG 1 cut(s) 1823
PceI AGGCCT 2 cut(s) 142, 2249
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 4 cut(s) 595, 667, 1605, 1701
PdmI GAANNNNTTC 1 cut(s) 2511
PfeI GAWTC 2 cut(s) 1103, 2308
PflMI CCANNNNNTGG 1 cut(s) 2004
PfoI TCCNGGA 2 cut(s) 1675, 1997
PkrI GCNGC 9 cut(s) 387, 562, 667, 755, 794, 1984, 2032, 2593, 2596
PleI GAGTC 6 cut(s) 498, 518, 602, 1630, 2206, 2613
PpsI GAGTC 6 cut(s) 498, 518, 602, 1630, 2206, 2613
PshAI GACNNNNGTC 1 cut(s) 1621
PshBI ATTAAT 1 cut(s) 1839
Psp6I CCWGG 6 cut(s) 142, 838, 1527, 1954, 1997, 2359
PspEI GGTNACC 1 cut(s) 1950
PspFI CCCAGC 2 cut(s) 1077, 2426
PspGI CCWGG 6 cut(s) 142, 838, 1527, 1954, 1997, 2359
PspN4I GGNNCC 4 cut(s) 25, 262, 1680, 1858
PspPI GGNCC 5 cut(s) 780, 842, 1679, 1736, 2101
PstI CTGCAG 2 cut(s) 758, 2035
PstNI CAGNNNCTG 1 cut(s) 2639
PsuI RGATCY 2 cut(s) 152, 461
RruI TCGCGA 1 cut(s) 587
RsaI GTAC 6 cut(s) 420, 546, 965, 1070, 1348, 2041
RsaNI GTAC 6 cut(s) 419, 545, 964, 1069, 1347, 2040
RseI CAYNNNNRTG 4 cut(s) 824, 1823, 2460, 2718
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 102, 1662, 1839, 2616
SatI GCNGC 9 cut(s) 386, 561, 666, 754, 793, 1983, 2031, 2592, 2595
Sau3AI GATC 5 cut(s) 152, 461, 1053, 1807, 2233
Sau96I GGNCC 5 cut(s) 780, 842, 1679, 1736, 2101
ScaI AGTACT 2 cut(s) 420, 1070
SchI GAGTC 6 cut(s) 499, 519, 602, 1631, 2207, 2614
ScrFI CCNGG 8 cut(s) 144, 779, 840, 1529, 1677, 1956, 1999, 2361
SduI GDGCHC 3 cut(s) 1485, 1830, 2546
SexAI ACCWGGT 1 cut(s) 838
SfaNI GCATC 4 cut(s) 909, 1131, 1273, 1308
SfcI CTRYAG 3 cut(s) 754, 2031, 2559
SinI GGWCC 4 cut(s) 842, 1679, 1736, 2101
SmiMI CAYNNNNRTG 4 cut(s) 824, 1823, 2460, 2718
SmlI CTYRAG 1 cut(s) 1163
SmoI CTYRAG 1 cut(s) 1163
SpeI ACTAGT 1 cut(s) 1231
SseBI AGGCCT 2 cut(s) 142, 2249
SsiI CCGC 5 cut(s) 44, 53, 792, 1985, 2492
SspMI CTAG 5 cut(s) 447, 482, 1232, 1478, 2588
StuI AGGCCT 2 cut(s) 142, 2249
StyD4I CCNGG 8 cut(s) 142, 777, 838, 1527, 1675, 1954, 1997, 2359
StyI CCWWGG 7 cut(s) 1200, 1388, 1739, 1899, 2104, 2650, 2705
TaaI ACNGT 6 cut(s) 379, 415, 1060, 1782, 2205, 2674
TaiI ACGT 7 cut(s) 127, 292, 1010, 1521, 1621, 1767, 1963
TaqI TCGA 2 cut(s) 1340, 2622
TatI WGTACW 3 cut(s) 418, 963, 1068
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 2 cut(s) 1103, 2308
Tru1I TTAA 4 cut(s) 102, 1662, 1839, 2616
Tru9I TTAA 4 cut(s) 102, 1662, 1839, 2616
TscAI CASTG 6 cut(s) 979, 1063, 1293, 1490, 1787, 2697
TseFI GTSAC 4 cut(s) 1514, 1941, 1950, 2199
TseI GCWGC 8 cut(s) 385, 560, 665, 753, 1982, 2030, 2591, 2594
Tsp45I GTSAC 4 cut(s) 1514, 1941, 1950, 2199
TspDTI ATGAA 9 cut(s) 149, 715, 1313, 1574, 2275, 2490, 2504, 2640, 2730
TspGWI ACGGA 2 cut(s) 1059, 1572
TspRI CASTG 6 cut(s) 979, 1063, 1293, 1490, 1787, 2697
Van91I CCANNNNNTGG 1 cut(s) 2004
VpaK11BI GGWCC 4 cut(s) 842, 1679, 1736, 2101
VspI ATTAAT 1 cut(s) 1839
XapI RAATTY 7 cut(s) 853, 1352, 1441, 1498, 1566, 1720, 2321
XceI RCATGY 1 cut(s) 1093
XcmI CCANNNNNNNNNTGG 1 cut(s) 2657
XmnI GAANNNNTTC 1 cut(s) 2511
XspI CTAG 5 cut(s) 447, 482, 1232, 1478, 2588
ZrmI AGTACT 2 cut(s) 420, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.