Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

67033333 .. 67034771

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0540100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAACAACTTGGGAATAAGTATATGGTCGATGATTGCTGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAACCATTGGCACACCCACATGAAGAAGAAGAAGCGCACATCTGGTCAAGTTGTACTTCTAAAAGATCATCAGCAGTCTTCTGATGATCACGAGTACTCATCAAGCAATTCAGAATATCAATTAGGGGCTCACGAAAGTGCTACTCATAATTGTAATGATGCTAATTCTCTACAACTACTTCATCCCCAAATTTTGGAGAGCTCCCCTGTAGTATCCCGTGAGTCAACGTTTTCCAGTAGTACTAGTTCAGCAAAGTATTTCTCCTCCTCCTCCTCCTCCTCATCCTCAAGCTCCCCTAATAATCATGAAGCACGAGGTTCTACCGTGATCATGAACTATCTTGGTGATCAAGATATTGTCATGGTTTCATCATCAGAAACAATGATATTGGATCAAGAATACAGTGCTGGTGATTTTTGGACCAAACCGTTTCTACAGGACAATACCTGTATCGAAAGTGACACTATATCATCTTCGTCATCGTATTTATTGTCCTATGATGAAGGCATGGATTTGTTCTACCAGGTCATGCCAACACCGCAAGAGGGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

209

Amino Acids

23.14

Weight (kDa)

5.01

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	4 - 31	2.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	1 cut(s)	614
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	3 cut(s)	129, 170, 316
AfiI	CCNNNNNNNGG	2 cut(s)	268, 620
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	49, 597
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	276, 366
AluI	AGCT	2 cut(s)	276, 366
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	431, 497
AvaII	GGWCC	1 cut(s)	495
BanII	GRGCYC	2 cut(s)	205, 278
BauI	CACGAG	2 cut(s)	164, 387
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	51, 599
BciVI	GTATCC	1 cut(s)	298
BclI	TGATCA	3 cut(s)	160, 402, 421
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	2 cut(s)	282, 509
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmcAI	AGTACT	2 cut(s)	170, 316
Bme1390I	CCNGG	2 cut(s)	51, 599
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	51, 599
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 620
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	51, 599
BseGI	GGATG	2 cut(s)	256, 356
BseLI	CCNNNNNNNGG	2 cut(s)	268, 620
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	6 cut(s)	328, 331, 334, 337, 340, 343
BseXI	GCAGC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	268, 620
Bsp1286I	GDGCHC	2 cut(s)	205, 278
Bsp143I	GATC	5 cut(s)	139, 160, 402, 421, 466
BspACI	CCGC	1 cut(s)	614
BspHI	TCATGA	2 cut(s)	379, 405
BspPI	GGATC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	5 cut(s)	139, 160, 402, 421, 466
BssSI	CACGAG	2 cut(s)	164, 387
Bst2BI	CACGAG	2 cut(s)	164, 387
Bst2UI	CCWGG	2 cut(s)	51, 599
Bst4CI	ACNGT	3 cut(s)	400, 479, 504
BstF5I	GGATG	2 cut(s)	256, 356
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	5 cut(s)	142, 163, 405, 424, 469
BstMBI	GATC	5 cut(s)	139, 160, 402, 421, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	2 cut(s)	51, 599
BstSCI	CCNGG	2 cut(s)	49, 597
BstSFI	CTRYAG	2 cut(s)	282, 509
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	256, 356
BtsIMutI	CAGTG	1 cut(s)	484
CciI	TCATGA	2 cut(s)	379, 405
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	495
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	128, 169, 315
CviAII	CATG	6 cut(s)	94, 380, 406, 436, 583, 604
CviJI	RGCY	3 cut(s)	203, 276, 366
CviKI_1	RGCY	3 cut(s)	203, 276, 366
CviQI	GTAC	3 cut(s)	128, 169, 315
DpnI	GATC	5 cut(s)	141, 162, 404, 423, 468
DpnII	GATC	5 cut(s)	139, 160, 402, 421, 466
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	205, 278
Eco47I	GGWCC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	49, 597
EcoT38I	GRGCYC	2 cut(s)	205, 278
FaeI	CATG	6 cut(s)	97, 383, 409, 439, 586, 607
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	6 cut(s)	93, 379, 405, 435, 582, 603
FbaI	TGATCA	3 cut(s)	160, 402, 421
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	2 cut(s)	243, 343
FriOI	GRGCYC	2 cut(s)	205, 278
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	6 cut(s)	97, 383, 409, 439, 586, 607
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	2 cut(s)	431, 497
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	157, 187, 451
Hpy188III	TCNNGA	6 cut(s)	164, 206, 380, 406, 425, 470
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	3 cut(s)	400, 479, 504
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	6 cut(s)	97, 383, 409, 439, 586, 607
HspAI	GCGC	1 cut(s)	109
Ksp22I	TGATCA	3 cut(s)	160, 402, 421
Kzo9I	GATC	5 cut(s)	139, 160, 402, 421, 466
LmnI	GCTCC	2 cut(s)	281, 371
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	5 cut(s)	141, 162, 404, 423, 468
MboI	GATC	5 cut(s)	139, 160, 402, 421, 466
MboII	GAAGA	6 cut(s)	66, 109, 112, 115, 144, 540
MhlI	GDGCHC	2 cut(s)	205, 278
MluCI	AATT	6 cut(s)	44, 181, 194, 223, 238, 264
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	349, 352, 355, 358, 361, 364, 370, 383, 613
MslI	CAYNNNNRTG	2 cut(s)	92, 210
MspR9I	CCNGG	2 cut(s)	51, 599
MvaI	CCWGG	2 cut(s)	51, 599
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	5 cut(s)	139, 160, 402, 421, 466
NlaIII	CATG	6 cut(s)	97, 383, 409, 439, 586, 607
NmuCI	GTSAC	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	210
PagI	TCATGA	2 cut(s)	379, 405
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	49, 597
PspGI	CCWGG	2 cut(s)	49, 597
PspPI	GGNCC	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
RsaI	GTAC	3 cut(s)	129, 170, 316
RsaNI	GTAC	3 cut(s)	128, 169, 315
RseI	CAYNNNNRTG	2 cut(s)	92, 210
SacI	GAGCTC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	5 cut(s)	139, 160, 402, 421, 466
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	2 cut(s)	170, 316
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	51, 599
SduI	GDGCHC	2 cut(s)	205, 278
SetI	ASST	6 cut(s)	278, 305, 368, 394, 524, 603
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	282, 509
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	92, 210
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	6 cut(s)	44, 181, 194, 223, 238, 264
SsiI	CCGC	1 cut(s)	614
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	49, 597
TaaI	ACNGT	3 cut(s)	400, 479, 504
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	29, 528
TasI	AATT	6 cut(s)	44, 181, 194, 223, 238, 264
TatI	WGTACW	3 cut(s)	127, 168, 314
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	8 cut(s)	17, 81, 110, 245, 396, 422, 432, 591
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	2 cut(s)	170, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.