Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC1 | PF03109 | 195 - 438 | 3.2e-75 | ABC1 atypical kinase-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 1 cut(s) | 242 |
| AccI | GTMKAC | 2 cut(s) | 198, 717 |
| AccII | CGCG | 3 cut(s) | 52, 54, 2056 |
| AciI | CCGC | 6 cut(s) | 50, 54, 57, 240, 257, 272 |
| AclWI | GGATC | 7 cut(s) | 1104, 1157, 1541, 1601, 1701, 2000, 2093 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 3 cut(s) | 483, 884, 2155 |
| AcuI | CTGAAG | 6 cut(s) | 11, 398, 569, 1215, 1839, 2070 |
| AcvI | CACGTG | 1 cut(s) | 293 |
| AcyI | GRCGYC | 3 cut(s) | 9, 243, 546 |
| AdeI | CACNNNGTG | 1 cut(s) | 42 |
| AfaI | GTAC | 4 cut(s) | 341, 651, 1368, 1521 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 56, 358, 1172 |
| AgsI | TTSAA | 8 cut(s) | 412, 782, 1087, 1477, 1558, 1651, 1750, 2042 |
| AjnI | CCWGG | 2 cut(s) | 772, 1171 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1742, 1774 |
| Alw21I | GWGCWC | 3 cut(s) | 477, 576, 912 |
| Alw26I | GTCTC | 3 cut(s) | 154, 177, 1229 |
| AlwI | GGATC | 7 cut(s) | 1104, 1157, 1541, 1601, 1701, 2000, 2093 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2147 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| AoxI | GGCC | 5 cut(s) | 47, 77, 282, 539, 870 |
| ApoI | RAATTY | 3 cut(s) | 483, 884, 2155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1779 |
| AspA2I | CCTAGG | 1 cut(s) | 2062 |
| AspLEI | GCGC | 4 cut(s) | 54, 245, 2056, 2058 |
| AspS9I | GGNCC | 6 cut(s) | 282, 500, 871, 1763, 1907, 1989 |
| AsuC2I | CCSGG | 2 cut(s) | 353, 1379 |
| AsuHPI | GGTGA | 6 cut(s) | 139, 218, 229, 373, 1114, 1784 |
| AsuII | TTCGAA | 1 cut(s) | 2153 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 4 cut(s) | 500, 1763, 1907, 1989 |
| AvrII | CCTAGG | 1 cut(s) | 2062 |
| BaeGI | GKGCMC | 1 cut(s) | 1838 |
| BanI | GGYRCC | 1 cut(s) | 242 |
| BanII | GRGCYC | 3 cut(s) | 477, 576, 912 |
| BauI | CACGAG | 1 cut(s) | 670 |
| BbrPI | CACGTG | 1 cut(s) | 293 |
| BbsI | GAAGAC | 1 cut(s) | 729 |
| Bbv12I | GWGCWC | 3 cut(s) | 477, 576, 912 |
| BccI | CCATC | 4 cut(s) | 691, 1436, 1649, 1763 |
| BceAI | ACGGC | 7 cut(s) | 5, 16, 127, 183, 230, 358, 476 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 215, 249 |
| BciT130I | CCWGG | 2 cut(s) | 774, 1173 |
| BcnI | CCSGG | 2 cut(s) | 353, 1379 |
| BcoDI | GTCTC | 3 cut(s) | 154, 177, 1229 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 246 |
| BglII | AGATCT | 1 cut(s) | 228 |
| BlnI | CCTAGG | 1 cut(s) | 2062 |
| Bme1390I | CCNGG | 4 cut(s) | 353, 774, 1173, 1379 |
| Bme18I | GGWCC | 4 cut(s) | 500, 1763, 1907, 1989 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 6 cut(s) | 282, 500, 871, 1763, 1907, 1989 |
| BmiI | GGNNCC | 4 cut(s) | 244, 501, 1673, 1764 |
| BmrFI | CCNGG | 4 cut(s) | 353, 774, 1173, 1379 |
| BmsI | GCATC | 5 cut(s) | 123, 580, 1384, 1618, 1720 |
| BoxI | GACNNNNGTC | 1 cut(s) | 549 |
| BpiI | GAAGAC | 1 cut(s) | 729 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 130, 162, 560, 592 |
| BpmI | CTGGAG | 1 cut(s) | 587 |
| Bpu10I | CCTNAGC | 1 cut(s) | 476 |
| Bpu14I | TTCGAA | 1 cut(s) | 2153 |
| BpuEI | CTTGAG | 2 cut(s) | 716, 1160 |
| BpuMI | CCSGG | 2 cut(s) | 353, 1379 |
| Bsa29I | ATCGAT | 2 cut(s) | 423, 444 |
| BsaAI | YACGTR | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1167, 1611 |
| BsaHI | GRCGYC | 3 cut(s) | 9, 243, 546 |
| BsaI | GGTCTC | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 5 cut(s) | 80, 285, 772, 1172, 2062 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1359, 1389 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 56, 358, 1172 |
| Bse118I | RCCGGY | 1 cut(s) | 45 |
| Bse1I | ACTGG | 3 cut(s) | 1114, 1440, 1909 |
| Bse3DI | GCAATG | 3 cut(s) | 1903, 1923, 1923 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1167, 1611 |
| BseBI | CCWGG | 2 cut(s) | 774, 1173 |
| BseCI | ATCGAT | 2 cut(s) | 423, 444 |
| BseDI | CCNNGG | 5 cut(s) | 80, 285, 772, 1172, 2062 |
| BseGI | GGATG | 5 cut(s) | 595, 868, 1168, 1447, 1660 |
| BseJI | GATNNNNATC | 2 cut(s) | 1167, 1611 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 56, 358, 1172 |
| BseMI | GCAATG | 3 cut(s) | 1903, 1923, 1923 |
| BseMII | CTCAG | 5 cut(s) | 490, 570, 1141, 1636, 1986 |
| BseNI | ACTGG | 3 cut(s) | 1114, 1440, 1909 |
| BsePI | GCGCGC | 1 cut(s) | 2054 |
| BseRI | GAGGAG | 3 cut(s) | 97, 584, 955 |
| BseSI | GKGCMC | 1 cut(s) | 1838 |
| BseX3I | CGGCCG | 1 cut(s) | 47 |
| BseYI | CCCAGC | 2 cut(s) | 643, 1483 |
| BsgI | GTGCAG | 3 cut(s) | 245, 941, 1141 |
| Bsh1236I | CGCG | 3 cut(s) | 52, 54, 2056 |
| Bsh1285I | CGRYCG | 2 cut(s) | 50, 253 |
| BshFI | GGCC | 5 cut(s) | 49, 79, 284, 541, 872 |
| BshNI | GGYRCC | 1 cut(s) | 242 |
| BshVI | ATCGAT | 2 cut(s) | 423, 444 |
| BsiEI | CGRYCG | 2 cut(s) | 50, 253 |
| BsiHKAI | GWGCWC | 3 cut(s) | 477, 576, 912 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 3 cut(s) | 46, 353, 1378 |
| BslFI | GGGAC | 7 cut(s) | 513, 942, 968, 1394, 1466, 1992, 2082 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 56, 358, 1172 |
| BsmAI | GTCTC | 3 cut(s) | 154, 177, 1229 |
| BsmBI | CGTCTC | 1 cut(s) | 177 |
| BsmFI | GGGAC | 7 cut(s) | 513, 942, 968, 1394, 1466, 1992, 2082 |
| BsmI | GAATGC | 1 cut(s) | 616 |
| BsnI | GGCC | 5 cut(s) | 49, 79, 284, 541, 872 |
| Bso31I | GGTCTC | 1 cut(s) | 154 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp119I | TTCGAA | 1 cut(s) | 2153 |
| Bsp1286I | GDGCHC | 4 cut(s) | 477, 576, 912, 1838 |
| Bsp19I | CCATGG | 1 cut(s) | 285 |
| BspACI | CCGC | 6 cut(s) | 50, 54, 57, 240, 257, 272 |
| BspANI | GGCC | 5 cut(s) | 49, 79, 284, 541, 872 |
| BspCNI | CTCAG | 5 cut(s) | 489, 571, 1140, 1635, 1987 |
| BspDI | ATCGAT | 2 cut(s) | 423, 444 |
| BspFNI | CGCG | 3 cut(s) | 52, 54, 2056 |
| BspLI | GGNNCC | 4 cut(s) | 244, 501, 1673, 1764 |
| BspPI | GGATC | 7 cut(s) | 1104, 1157, 1541, 1601, 1701, 2000, 2093 |
| BspT104I | TTCGAA | 1 cut(s) | 2153 |
| BspT107I | GGYRCC | 1 cut(s) | 242 |
| BspTNI | GGTCTC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 3 cut(s) | 1903, 1923, 1923 |
| BsrFI | RCCGGY | 1 cut(s) | 45 |
| BsrI | ACTGG | 3 cut(s) | 1114, 1440, 1909 |
| BssAI | RCCGGY | 1 cut(s) | 45 |
| BssECI | CCNNGG | 5 cut(s) | 80, 285, 772, 1172, 2062 |
| BssHII | GCGCGC | 1 cut(s) | 2054 |
| BssNI | GRCGYC | 3 cut(s) | 9, 243, 546 |
| BssSI | CACGAG | 1 cut(s) | 670 |
| BssT1I | CCWWGG | 2 cut(s) | 285, 2062 |
| Bst2BI | CACGAG | 1 cut(s) | 670 |
| Bst2UI | CCWGG | 2 cut(s) | 774, 1173 |
| Bst4CI | ACNGT | 5 cut(s) | 1119, 1411, 1519, 2109, 2143 |
| BstACI | GRCGYC | 3 cut(s) | 9, 243, 546 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 296, 1119, 1730 |
| BstBAI | YACGTR | 1 cut(s) | 293 |
| BstBI | TTCGAA | 1 cut(s) | 2153 |
| BstDEI | CTNAG | 6 cut(s) | 476, 579, 1127, 1622, 1985, 1995 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstF5I | GGATG | 5 cut(s) | 595, 868, 1168, 1447, 1660 |
| BstFNI | CGCG | 3 cut(s) | 52, 54, 2056 |
| BstH2I | RGCGCY | 1 cut(s) | 246 |
| BstHHI | GCGC | 4 cut(s) | 54, 245, 2056, 2058 |
| BstMAI | GTCTC | 3 cut(s) | 154, 177, 1229 |
| BstMCI | CGRYCG | 2 cut(s) | 50, 253 |
| BstNI | CCWGG | 2 cut(s) | 774, 1173 |
| BstNSI | RCATGY | 1 cut(s) | 894 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 549 |
| BstSCI | CCNGG | 4 cut(s) | 351, 772, 1171, 1377 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSLI | GKGCMC | 1 cut(s) | 1838 |
| BstUI | CGCG | 3 cut(s) | 52, 54, 2056 |
| BstV2I | GAAGAC | 1 cut(s) | 729 |
| BstX2I | RGATCY | 4 cut(s) | 228, 1096, 1162, 1606 |
| BstYI | RGATCY | 4 cut(s) | 228, 1096, 1162, 1606 |
| BstZI | CGGCCG | 1 cut(s) | 47 |
| Bsu15I | ATCGAT | 2 cut(s) | 423, 444 |
| BsuRI | GGCC | 5 cut(s) | 49, 79, 284, 541, 872 |
| BsuTUI | ATCGAT | 2 cut(s) | 423, 444 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtsCI | GGATG | 5 cut(s) | 595, 868, 1168, 1447, 1660 |
| BtsIMutI | CAGTG | 5 cut(s) | 1107, 1124, 1433, 1515, 1815 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2147 |
| CfoI | GCGC | 4 cut(s) | 54, 245, 2056, 2058 |
| Cfr10I | RCCGGY | 1 cut(s) | 45 |
| Cfr13I | GGNCC | 6 cut(s) | 282, 500, 871, 1763, 1907, 1989 |
| ClaI | ATCGAT | 2 cut(s) | 423, 444 |
| Csp6I | GTAC | 4 cut(s) | 340, 650, 1367, 1520 |
| CviAII | CATG | 6 cut(s) | 286, 891, 1157, 1271, 1282, 1942 |
| CviQI | GTAC | 4 cut(s) | 340, 650, 1367, 1520 |
| DdeI | CTNAG | 6 cut(s) | 476, 579, 1127, 1622, 1985, 1995 |
| DinI | GGCGCC | 1 cut(s) | 244 |
| DraI | TTTAAA | 1 cut(s) | 1429 |
| DraIII | CACNNNGTG | 1 cut(s) | 42 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| EagI | CGGCCG | 1 cut(s) | 47 |
| EciI | GGCGGA | 1 cut(s) | 287 |
| Ecl136II | GAGCTC | 3 cut(s) | 475, 574, 910 |
| EclXI | CGGCCG | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 2 cut(s) | 285, 2062 |
| Eco147I | AGGCCT | 1 cut(s) | 541 |
| Eco24I | GRGCYC | 3 cut(s) | 477, 576, 912 |
| Eco31I | GGTCTC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 4 cut(s) | 500, 1763, 1907, 1989 |
| Eco52I | CGGCCG | 1 cut(s) | 47 |
| Eco53kI | GAGCTC | 3 cut(s) | 475, 574, 910 |
| Eco57I | CTGAAG | 6 cut(s) | 11, 398, 569, 1215, 1839, 2070 |
| Eco72I | CACGTG | 1 cut(s) | 293 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| EcoICRI | GAGCTC | 3 cut(s) | 475, 574, 910 |
| EcoO109I | RGGNCCY | 2 cut(s) | 500, 1989 |
| EcoRII | CCWGG | 2 cut(s) | 772, 1171 |
| EcoT14I | CCWWGG | 2 cut(s) | 285, 2062 |
| EcoT22I | ATGCAT | 1 cut(s) | 1498 |
| EcoT38I | GRGCYC | 3 cut(s) | 477, 576, 912 |
| EgeI | GGCGCC | 1 cut(s) | 244 |
| EheI | GGCGCC | 1 cut(s) | 244 |
| ErhI | CCWWGG | 2 cut(s) | 285, 2062 |
| Esp3I | CGTCTC | 1 cut(s) | 177 |
| FaeI | CATG | 6 cut(s) | 289, 894, 1160, 1274, 1285, 1945 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 963, 995, 1188, 1220, 1193, 1225 |
| FaqI | GGGAC | 7 cut(s) | 513, 942, 968, 1394, 1466, 1992, 2082 |
| FatI | CATG | 6 cut(s) | 285, 890, 1156, 1270, 1281, 1941 |
| FblI | GTMKAC | 2 cut(s) | 198, 717 |
| FokI | GGATG | 5 cut(s) | 602, 875, 1155, 1454, 1667 |
| FriOI | GRGCYC | 3 cut(s) | 477, 576, 912 |
| GlaI | GCGC | 4 cut(s) | 53, 244, 2055, 2057 |
| GsaI | CCCAGC | 2 cut(s) | 647, 1487 |
| GsuI | CTGGAG | 1 cut(s) | 587 |
| HaeII | RGCGCY | 1 cut(s) | 246 |
| HaeIII | GGCC | 5 cut(s) | 49, 79, 284, 541, 872 |
| HapII | CCGG | 3 cut(s) | 46, 353, 1378 |
| HhaI | GCGC | 4 cut(s) | 54, 245, 2056, 2058 |
| Hin1I | GRCGYC | 3 cut(s) | 9, 243, 546 |
| Hin1II | CATG | 6 cut(s) | 289, 894, 1160, 1274, 1285, 1945 |
| Hin6I | GCGC | 4 cut(s) | 52, 243, 2054, 2056 |
| HinP1I | GCGC | 4 cut(s) | 52, 243, 2054, 2056 |
| HincII | GTYRAC | 3 cut(s) | 199, 534, 1023 |
| HindII | GTYRAC | 3 cut(s) | 199, 534, 1023 |
| HindIII | AAGCTT | 3 cut(s) | 1202, 1684, 1821 |
| HinfI | GANTC | 8 cut(s) | 64, 364, 373, 659, 825, 1044, 1177, 1847 |
| HpaII | CCGG | 3 cut(s) | 46, 353, 1378 |
| HphI | GGTGA | 6 cut(s) | 139, 218, 229, 373, 1114, 1784 |
| Hpy166II | GTNNAC | 9 cut(s) | 36, 199, 313, 534, 718, 1023, 1105, 1279, 1418 |
| Hpy188III | TCNNGA | 9 cut(s) | 566, 587, 741, 905, 1214, 1292, 1328, 1766, 1969 |
| Hpy8I | GTNNAC | 9 cut(s) | 36, 199, 313, 534, 718, 1023, 1105, 1279, 1418 |
| Hpy99I | CGWCG | 8 cut(s) | 14, 20, 73, 76, 169, 203, 251, 559 |
| HpyAV | CCTTC | 6 cut(s) | 214, 631, 1190, 1520, 1870, 2048 |
| HpyCH4III | ACNGT | 5 cut(s) | 1119, 1411, 1519, 2109, 2143 |
| HpyCH4IV | ACGT | 3 cut(s) | 192, 292, 546 |
| HpyF3I | CTNAG | 6 cut(s) | 476, 579, 1127, 1622, 1985, 1995 |
| HpySE526I | ACGT | 3 cut(s) | 192, 292, 546 |
| Hsp92I | GRCGYC | 3 cut(s) | 9, 243, 546 |
| Hsp92II | CATG | 6 cut(s) | 289, 894, 1160, 1274, 1285, 1945 |
| HspAI | GCGC | 4 cut(s) | 52, 243, 2054, 2056 |
| KasI | GGCGCC | 1 cut(s) | 242 |
| KroI | GCCGGC | 1 cut(s) | 45 |
| KroNI | GCCGGC | 1 cut(s) | 47 |
| LmnI | GCTCC | 3 cut(s) | 472, 571, 640 |
| LweI | GCATC | 5 cut(s) | 123, 580, 1384, 1618, 1720 |
| MaeII | ACGT | 3 cut(s) | 192, 292, 546 |
| MaeIII | GTNAC | 3 cut(s) | 853, 1509, 1813 |
| MboII | GAAGA | 7 cut(s) | 17, 391, 729, 794, 1256, 1787, 2117 |
| MfeI | CAATTG | 2 cut(s) | 690, 1362 |
| MflI | RGATCY | 4 cut(s) | 228, 1096, 1162, 1606 |
| MhlI | GDGCHC | 4 cut(s) | 477, 576, 912, 1838 |
| Mly113I | GGCGCC | 1 cut(s) | 243 |
| MlyI | GAGTC | 5 cut(s) | 58, 367, 653, 1053, 1841 |
| MmeI | TCCRAC | 3 cut(s) | 41, 92, 578 |
| Mph1103I | ATGCAT | 1 cut(s) | 1498 |
| MroNI | GCCGGC | 1 cut(s) | 45 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1779 |
| MslI | CAYNNNNRTG | 2 cut(s) | 119, 625 |
| MspI | CCGG | 3 cut(s) | 46, 353, 1378 |
| MspR9I | CCNGG | 4 cut(s) | 353, 774, 1173, 1379 |
| MunI | CAATTG | 2 cut(s) | 690, 1362 |
| Mva1269I | GAATGC | 1 cut(s) | 616 |
| MvaI | CCWGG | 2 cut(s) | 774, 1173 |
| MvnI | CGCG | 3 cut(s) | 52, 54, 2056 |
| NaeI | GCCGGC | 1 cut(s) | 47 |
| NarI | GGCGCC | 1 cut(s) | 243 |
| NciI | CCSGG | 2 cut(s) | 353, 1379 |
| NcoI | CCATGG | 1 cut(s) | 285 |
| NgoMIV | GCCGGC | 1 cut(s) | 45 |
| NlaIII | CATG | 6 cut(s) | 289, 894, 1160, 1274, 1285, 1945 |
| NlaIV | GGNNCC | 4 cut(s) | 244, 501, 1673, 1764 |
| NmeAIII | GCCGAG | 1 cut(s) | 105 |
| NmuCI | GTSAC | 2 cut(s) | 1509, 1813 |
| NsiI | ATGCAT | 1 cut(s) | 1498 |
| NspI | RCATGY | 1 cut(s) | 894 |
| NspV | TTCGAA | 1 cut(s) | 2153 |
| PaeI | GCATGC | 1 cut(s) | 894 |
| PauI | GCGCGC | 1 cut(s) | 2054 |
| PceI | AGGCCT | 1 cut(s) | 541 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 18, 77, 668 |
| PctI | GAATGC | 1 cut(s) | 616 |
| PdiI | GCCGGC | 1 cut(s) | 47 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1779 |
| PfeI | GAWTC | 3 cut(s) | 364, 825, 1177 |
| PflFI | GACNNNGTC | 1 cut(s) | 194 |
| PfoI | TCCNGGA | 1 cut(s) | 1377 |
| Ple19I | CGATCG | 1 cut(s) | 253 |
| PleI | GAGTC | 5 cut(s) | 58, 367, 653, 1052, 1841 |
| PluTI | GGCGCC | 1 cut(s) | 246 |
| PmaCI | CACGTG | 1 cut(s) | 293 |
| PmlI | CACGTG | 1 cut(s) | 293 |
| PpsI | GAGTC | 5 cut(s) | 58, 367, 653, 1052, 1841 |
| Ppu21I | YACGTR | 1 cut(s) | 293 |
| PpuMI | RGGWCCY | 2 cut(s) | 500, 1989 |
| PshAI | GACNNNNGTC | 1 cut(s) | 549 |
| Psp124BI | GAGCTC | 3 cut(s) | 477, 576, 912 |
| Psp5II | RGGWCCY | 2 cut(s) | 500, 1989 |
| Psp6I | CCWGG | 2 cut(s) | 772, 1171 |
| PspCI | CACGTG | 1 cut(s) | 293 |
| PspFI | CCCAGC | 2 cut(s) | 643, 1483 |
| PspGI | CCWGG | 2 cut(s) | 772, 1171 |
| PspN4I | GGNNCC | 4 cut(s) | 244, 501, 1673, 1764 |
| PspPI | GGNCC | 6 cut(s) | 282, 500, 871, 1763, 1907, 1989 |
| PspPPI | RGGWCCY | 2 cut(s) | 500, 1989 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2147 |
| PsuI | RGATCY | 4 cut(s) | 228, 1096, 1162, 1606 |
| PsyI | GACNNNGTC | 1 cut(s) | 194 |
| PteI | GCGCGC | 1 cut(s) | 2054 |
| PvuI | CGATCG | 1 cut(s) | 253 |
| RsaI | GTAC | 4 cut(s) | 341, 651, 1368, 1521 |
| RsaNI | GTAC | 4 cut(s) | 340, 650, 1367, 1520 |
| RseI | CAYNNNNRTG | 2 cut(s) | 119, 625 |
| SacI | GAGCTC | 3 cut(s) | 477, 576, 912 |
| SalI | GTCGAC | 1 cut(s) | 197 |
| Sau96I | GGNCC | 6 cut(s) | 282, 500, 871, 1763, 1907, 1989 |
| SchI | GAGTC | 5 cut(s) | 58, 367, 653, 1053, 1841 |
| ScrFI | CCNGG | 4 cut(s) | 353, 774, 1173, 1379 |
| SduI | GDGCHC | 4 cut(s) | 477, 576, 912, 1838 |
| SfaNI | GCATC | 5 cut(s) | 123, 580, 1384, 1618, 1720 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfoI | GGCGCC | 1 cut(s) | 244 |
| SfuI | TTCGAA | 1 cut(s) | 2153 |
| SinI | GGWCC | 4 cut(s) | 500, 1763, 1907, 1989 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 119, 625 |
| SmlI | CTYRAG | 2 cut(s) | 731, 1139 |
| SmoI | CTYRAG | 2 cut(s) | 731, 1139 |
| SphI | GCATGC | 1 cut(s) | 894 |
| SseBI | AGGCCT | 1 cut(s) | 541 |
| SsiI | CCGC | 6 cut(s) | 50, 54, 57, 240, 257, 272 |
| SspDI | GGCGCC | 1 cut(s) | 242 |
| SspI | AATATT | 1 cut(s) | 1858 |
| SstI | GAGCTC | 3 cut(s) | 477, 576, 912 |
| StuI | AGGCCT | 1 cut(s) | 541 |
| StyD4I | CCNGG | 4 cut(s) | 351, 772, 1171, 1377 |
| StyI | CCWWGG | 2 cut(s) | 285, 2062 |
| TaaI | ACNGT | 5 cut(s) | 1119, 1411, 1519, 2109, 2143 |
| TaiI | ACGT | 3 cut(s) | 195, 295, 549 |
| TaqI | TCGA | 8 cut(s) | 198, 235, 249, 423, 444, 662, 2128, 2153 |
| TaqII | GACCGA | 2 cut(s) | 178, 1256 |
| TatI | WGTACW | 1 cut(s) | 1519 |
| TauI | GCSGC | 3 cut(s) | 52, 57, 243 |
| TfiI | GAWTC | 3 cut(s) | 364, 825, 1177 |
| TscAI | CASTG | 5 cut(s) | 1114, 1124, 1440, 1522, 1822 |
| TseFI | GTSAC | 2 cut(s) | 1509, 1813 |
| Tsp45I | GTSAC | 2 cut(s) | 1509, 1813 |
| TspDTI | ATGAA | 5 cut(s) | 897, 1145, 1314, 1563, 1816 |
| TspGWI | ACGGA | 5 cut(s) | 216, 298, 572, 875, 1605 |
| TspRI | CASTG | 5 cut(s) | 1114, 1124, 1440, 1522, 1822 |
| Tth111I | GACNNNGTC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 4 cut(s) | 500, 1763, 1907, 1989 |
| XapI | RAATTY | 3 cut(s) | 483, 884, 2155 |
| XbaI | TCTAGA | 1 cut(s) | 1327 |
| XceI | RCATGY | 1 cut(s) | 894 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 993 |
| XmaJI | CCTAGG | 1 cut(s) | 2062 |
| XmiI | GTMKAC | 2 cut(s) | 198, 717 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1779 |
| ZraI | GACGTC | 1 cut(s) | 547 |
| Zsp2I | ATGCAT | 1 cut(s) | 1498 |