Rorug07G0217300

Mitogen-activated protein kinase kinase kinase 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
19408712 .. 19412093
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0217300.1

Sequence Viewer

Length: 1014 bp
ATGGAGGAGAGGTATGAGCCAATGAAGGATCTTGGGTCTGGCAACTTTGGAGTGGCGAGGCTGGTCAGAGACAAGAAGACCAAGGAGCTTGTGGCTGTTAAGTACATAGAGAGAGGGAAGAAGATTGATGAGAATGTTCAGAGGGAAATCATAAATCACAGATCCTTGAGGCATCCAAATATTGTCAGGTTCAAAGAGATCTTGTTGACTCCAAGTCATTTAGCTATTGTCATGGAATATGCAGCTGGTGGTGAGCTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAGCTGATATCTGGAGTCAGCTACTGTCATTCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGACGGAAGTGCAACACCACGTCTTAAAATTTGTGACTTTGGATACTCTAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTATATGTGATGTTGGTTGGAGCATATCCTTTTGAGGATCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATGAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTCGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATTTGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTAA

Protein Analysis

337

Amino Acids

38.08

Weight (kDa)

5.92

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 261 8.7e-74 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 257 2.5e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 505
AclWI GGATC 7 cut(s) 36, 156, 378, 602, 611, 615, 890
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 4 cut(s) 357, 423, 625, 790
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 3 cut(s) 104, 665, 684
AfiI CCNNNNNNNGG 1 cut(s) 911
AgsI TTSAA 2 cut(s) 193, 869
AhdI GACNNNNNGTC 1 cut(s) 213
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 2 cut(s) 776, 904
AluBI AGCT 9 cut(s) 88, 224, 245, 256, 322, 339, 805, 828, 935
AluI AGCT 9 cut(s) 88, 224, 245, 256, 322, 339, 805, 828, 935
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 7 cut(s) 36, 156, 378, 602, 611, 615, 890
AlwNI CAGNNNCTG 2 cut(s) 322, 342
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 1 cut(s) 928
ApeKI GCWGC 2 cut(s) 242, 319
ApoI RAATTY 4 cut(s) 357, 423, 625, 790
AspS9I GGNCC 2 cut(s) 555, 950
AsuHPI GGTGA 2 cut(s) 263, 1013
AvaII GGWCC 2 cut(s) 555, 950
BalI TGGCCA 1 cut(s) 930
BamHI GGATCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 2 cut(s) 83, 746
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 254, 331
BccI CCATC 2 cut(s) 527, 961
BciT130I CCWGG 2 cut(s) 778, 906
BciVI GTATCC 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 431
BglII AGATCT 1 cut(s) 198
BisI GCNGC 2 cut(s) 243, 320
BlsI GCNGC 2 cut(s) 244, 321
Bme1390I CCNGG 2 cut(s) 778, 906
Bme18I GGWCC 2 cut(s) 555, 950
BmeRI GACNNNNNGTC 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 555, 950
BmiI GGNNCC 2 cut(s) 609, 916
BmrFI CCNGG 2 cut(s) 778, 906
BmsI GCATC 2 cut(s) 181, 883
BpiI GAAGAC 2 cut(s) 83, 746
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 81, 351, 776, 905
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 3 cut(s) 26, 500, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 911
Bse1I ACTGG 2 cut(s) 384, 661
Bse3DI GCAATG 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 2 cut(s) 778, 906
BseDI CCNNGG 4 cut(s) 81, 351, 776, 905
BseGI GGATG 3 cut(s) 172, 753, 953
BseLI CCNNNNNNNGG 1 cut(s) 911
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 3 cut(s) 750, 996, 1009
BseNI ACTGG 2 cut(s) 384, 661
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 254, 331
BshFI GGCC 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 911
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 930
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 505
Bsp143I GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 1 cut(s) 930
BspCNI CTCAG 3 cut(s) 751, 995, 1008
BspEI TCCGGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 609, 916
BspPI GGATC 7 cut(s) 36, 156, 378, 602, 611, 615, 890
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 384, 661
BssECI CCNNGG 4 cut(s) 81, 351, 776, 905
BssMI GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 81, 351
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 778, 906
Bst4CI ACNGT 2 cut(s) 344, 481
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 492, 704
BstDEI CTNAG 5 cut(s) 444, 741, 759, 982, 995
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 172, 753, 953
BstKTI GATC 8 cut(s) 31, 164, 201, 373, 610, 619, 885, 994
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 2 cut(s) 778, 906
BstSCI CCNGG 2 cut(s) 776, 904
BstSNI TACGTA 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 254, 331
BstV2I GAAGAC 2 cut(s) 83, 746
BstX2I RGATCY 6 cut(s) 28, 161, 198, 370, 607, 616
BstYI RGATCY 6 cut(s) 28, 161, 198, 370, 607, 616
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 1 cut(s) 930
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 3 cut(s) 172, 753, 953
BtsIMutI CAGTG 1 cut(s) 1003
Cac8I GCNNGC 2 cut(s) 492, 704
CaiI CAGNNNCTG 2 cut(s) 322, 342
Cfr13I GGNCC 2 cut(s) 555, 950
Csp6I GTAC 3 cut(s) 103, 664, 683
CviAII CATG 2 cut(s) 232, 352
CviQI GTAC 3 cut(s) 103, 664, 683
DdeI CTNAG 5 cut(s) 444, 741, 759, 982, 995
DpnI GATC 8 cut(s) 30, 163, 200, 372, 609, 618, 884, 993
DpnII GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
DriI GACNNNNNGTC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 928
Eam1105I GACNNNNNGTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 686
Eco130I CCWWGG 2 cut(s) 81, 351
Eco24I GRGCYC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 555, 950
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 776, 904
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 81, 351
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 81, 351
FaeI CATG 2 cut(s) 235, 355
FatI CATG 2 cut(s) 231, 351
Fnu4HI GCNGC 2 cut(s) 243, 320
FokI GGATG 3 cut(s) 159, 760, 940
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 243, 320
GluI GCNGC 2 cut(s) 243, 320
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 930
HapII CCGG 1 cut(s) 506
Hin1II CATG 2 cut(s) 235, 355
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 5 cut(s) 208, 333, 751, 959, 980
HpaII CCGG 1 cut(s) 506
HphI GGTGA 2 cut(s) 263, 1013
Hpy166II GTNNAC 2 cut(s) 207, 666
Hpy188I TCNGA 8 cut(s) 68, 141, 375, 485, 786, 958, 964, 985
Hpy188III TCNNGA 4 cut(s) 330, 506, 611, 758
Hpy8I GTNNAC 2 cut(s) 207, 666
HpyAV CCTTC 4 cut(s) 19, 517, 747, 905
HpyCH4III ACNGT 2 cut(s) 344, 481
HpyCH4IV ACGT 3 cut(s) 415, 685, 844
HpyCH4V TGCA 9 cut(s) 242, 407, 460, 494, 545, 702, 833, 896, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 5 cut(s) 444, 741, 759, 982, 995
HpySE526I ACGT 3 cut(s) 415, 685, 844
Hsp92II CATG 2 cut(s) 235, 355
Kpn2I TCCGGA 1 cut(s) 505
Kzo9I GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
LmnI GCTCC 4 cut(s) 85, 508, 590, 944
Lsp1109I GCAGC 2 cut(s) 254, 331
LweI GCATC 2 cut(s) 181, 883
MaeII ACGT 3 cut(s) 415, 685, 844
MaeIII GTNAC 6 cut(s) 362, 428, 516, 565, 845, 1001
MalI GATC 8 cut(s) 30, 163, 200, 372, 609, 618, 884, 993
MboI GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
MboII GAAGA 7 cut(s) 88, 130, 133, 305, 626, 746, 881
MflI RGATCY 6 cut(s) 28, 161, 198, 370, 607, 616
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 6 cut(s) 357, 423, 625, 648, 790, 807
MluNI TGGCCA 1 cut(s) 930
MlyI GAGTC 5 cut(s) 202, 342, 760, 953, 974
MmeI TCCRAC 3 cut(s) 463, 568, 981
Mox20I TGGCCA 1 cut(s) 930
MroI TCCGGA 1 cut(s) 505
MscI TGGCCA 1 cut(s) 930
MseI TTAA 3 cut(s) 99, 420, 1012
Msp20I TGGCCA 1 cut(s) 930
MspA1I CMGCKG 2 cut(s) 245, 322
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 778, 906
MvaI CCWGG 2 cut(s) 778, 906
MwoI GCNNNNNNNGC 1 cut(s) 500
NcoI CCATGG 1 cut(s) 351
NdeII GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
NlaIII CATG 2 cut(s) 235, 355
NlaIV GGNNCC 2 cut(s) 609, 916
NmuCI GTSAC 6 cut(s) 362, 428, 516, 565, 845, 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 628
PkrI GCNGC 2 cut(s) 244, 321
PleI GAGTC 5 cut(s) 202, 341, 759, 953, 974
PpsI GAGTC 5 cut(s) 202, 341, 759, 953, 974
Ppu21I YACGTR 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 776, 904
PspGI CCWGG 2 cut(s) 776, 904
PspN4I GGNNCC 2 cut(s) 609, 916
PspPI GGNCC 2 cut(s) 555, 950
PstNI CAGNNNCTG 2 cut(s) 322, 342
PsuI RGATCY 6 cut(s) 28, 161, 198, 370, 607, 616
PvuII CAGCTG 2 cut(s) 245, 322
RsaI GTAC 3 cut(s) 104, 665, 684
RsaNI GTAC 3 cut(s) 103, 664, 683
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 3 cut(s) 99, 420, 1012
SatI GCNGC 2 cut(s) 243, 320
Sau3AI GATC 8 cut(s) 28, 161, 198, 370, 607, 616, 882, 991
Sau96I GGNCC 2 cut(s) 555, 950
SchI GAGTC 5 cut(s) 202, 342, 760, 953, 974
ScrFI CCNGG 2 cut(s) 778, 906
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 2 cut(s) 181, 883
SinI GGWCC 2 cut(s) 555, 950
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SnaBI TACGTA 1 cut(s) 686
Sse9I AATT 6 cut(s) 357, 423, 625, 648, 790, 807
SspI AATATT 1 cut(s) 181
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 776, 904
StyI CCWWGG 2 cut(s) 81, 351
TaaI ACNGT 2 cut(s) 344, 481
TaiI ACGT 3 cut(s) 418, 688, 847
TaqI TCGA 2 cut(s) 622, 840
TasI AATT 6 cut(s) 357, 423, 625, 648, 790, 807
TatI WGTACW 2 cut(s) 102, 663
Tru1I TTAA 3 cut(s) 99, 420, 1012
Tru9I TTAA 3 cut(s) 99, 420, 1012
TscAI CASTG 1 cut(s) 1003
TseFI GTSAC 6 cut(s) 362, 428, 516, 565, 845, 1001
TseI GCWGC 2 cut(s) 242, 319
Tsp45I GTSAC 6 cut(s) 362, 428, 516, 565, 845, 1001
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 2 cut(s) 414, 535
TspRI CASTG 1 cut(s) 1003
VpaK11BI GGWCC 2 cut(s) 555, 950
XapI RAATTY 4 cut(s) 357, 423, 625, 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.