Mitogen-Activated Protein Kinase Kinase Kinase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 404 |
| Acc36I | ACCTGC | 3 cut(s) | 404, 644, 716 |
| AccB1I | GGYRCC | 1 cut(s) | 1907 |
| AccII | CGCG | 1 cut(s) | 364 |
| AccIII | TCCGGA | 2 cut(s) | 156, 2152 |
| AciI | CCGC | 9 cut(s) | 31, 364, 367, 386, 846, 968, 1288, 1969, 2306 |
| AclI | AACGTT | 1 cut(s) | 957 |
| AclWI | GGATC | 9 cut(s) | 150, 1243, 1492, 1537, 1749, 1762, 2086, 2141, 2302 |
| AcoI | YGGCCR | 1 cut(s) | 1289 |
| AcsI | RAATTY | 2 cut(s) | 306, 1720 |
| AcuI | CTGAAG | 2 cut(s) | 564, 588 |
| AcyI | GRCGYC | 1 cut(s) | 1899 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 665, 1390, 1789, 2130, 2285 |
| AflII | CTTAAG | 2 cut(s) | 1190, 2198 |
| AgeI | ACCGGT | 2 cut(s) | 25, 1096 |
| AgsI | TTSAA | 6 cut(s) | 276, 687, 1019, 1837, 2120, 2215 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 70, 1963 |
| AhlI | ACTAGT | 2 cut(s) | 353, 470 |
| AjiI | CACGTC | 1 cut(s) | 1160 |
| AjnI | CCWGG | 1 cut(s) | 331 |
| AluBI | AGCT | 7 cut(s) | 182, 314, 578, 1669, 1741, 2042, 2245 |
| AluI | AGCT | 7 cut(s) | 182, 314, 578, 1669, 1741, 2042, 2245 |
| Alw21I | GWGCWC | 1 cut(s) | 2066 |
| Alw26I | GTCTC | 4 cut(s) | 633, 1358, 1480, 2210 |
| Alw44I | GTGCAC | 1 cut(s) | 2062 |
| AlwI | GGATC | 9 cut(s) | 150, 1243, 1492, 1537, 1749, 1762, 2086, 2141, 2302 |
| Ama87I | CYCGRG | 1 cut(s) | 2057 |
| Aor13HI | TCCGGA | 2 cut(s) | 156, 2152 |
| AoxI | GGCC | 2 cut(s) | 1289, 2270 |
| ApaLI | GTGCAC | 1 cut(s) | 2062 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 306, 1720 |
| AsiGI | ACCGGT | 2 cut(s) | 25, 1096 |
| AspLEI | GCGC | 1 cut(s) | 364 |
| AspS9I | GGNCC | 3 cut(s) | 539, 656, 2271 |
| AsuC2I | CCSGG | 3 cut(s) | 140, 1233, 2219 |
| AvaI | CYCGRG | 1 cut(s) | 2057 |
| AvaII | GGWCC | 2 cut(s) | 539, 656 |
| AxyI | CCTNAGG | 1 cut(s) | 2284 |
| BaeGI | GKGCMC | 1 cut(s) | 2066 |
| BamHI | GGATCC | 1 cut(s) | 1754 |
| BanI | GGYRCC | 1 cut(s) | 1907 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1092, 1124 |
| BauI | CACGAG | 1 cut(s) | 963 |
| BbsI | GAAGAC | 1 cut(s) | 66 |
| Bbv12I | GWGCWC | 1 cut(s) | 2066 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BceAI | ACGGC | 1 cut(s) | 60 |
| BciT130I | CCWGG | 1 cut(s) | 333 |
| BciVI | GTATCC | 2 cut(s) | 1387, 1462 |
| BclI | TGATCA | 1 cut(s) | 1603 |
| BcnI | CCSGG | 3 cut(s) | 140, 1233, 2219 |
| BcoDI | GTCTC | 4 cut(s) | 633, 1358, 1480, 2210 |
| BcuI | ACTAGT | 2 cut(s) | 353, 470 |
| BfaI | CTAG | 8 cut(s) | 311, 354, 471, 660, 681, 1763, 2108, 2177 |
| BfrI | CTTAAG | 2 cut(s) | 1190, 2198 |
| BfuAI | ACCTGC | 3 cut(s) | 404, 644, 716 |
| BfuI | GTATCC | 2 cut(s) | 1387, 1462 |
| BisI | GCNGC | 4 cut(s) | 32, 180, 365, 1289 |
| BlsI | GCNGC | 4 cut(s) | 33, 181, 366, 1290 |
| BmcAI | AGTACT | 1 cut(s) | 951 |
| Bme1390I | CCNGG | 4 cut(s) | 140, 333, 1233, 2219 |
| Bme18I | GGWCC | 2 cut(s) | 539, 656 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 70, 1963 |
| BmeT110I | CYCGRG | 1 cut(s) | 2057 |
| BmgBI | CACGTC | 1 cut(s) | 1160 |
| BmgT120I | GGNCC | 3 cut(s) | 539, 656, 2271 |
| BmiI | GGNNCC | 4 cut(s) | 1756, 1909, 1995, 2054 |
| BmrFI | CCNGG | 4 cut(s) | 140, 333, 1233, 2219 |
| BmsI | GCATC | 3 cut(s) | 373, 556, 1684 |
| BpiI | GAAGAC | 1 cut(s) | 66 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1397, 1429, 1421, 1453 |
| BpmI | CTGGAG | 2 cut(s) | 1203, 1980 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2290 |
| BpuEI | CTTGAG | 4 cut(s) | 1426, 1661, 1691, 1757 |
| BpuMI | CCSGG | 3 cut(s) | 140, 1233, 2219 |
| Bsa29I | ATCGAT | 2 cut(s) | 165, 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2299 |
| BsaHI | GRCGYC | 1 cut(s) | 1899 |
| BsaJI | CCNNGG | 3 cut(s) | 129, 1338, 2056 |
| BsaWI | WCCGGW | 6 cut(s) | 25, 156, 1096, 1201, 2010, 2152 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 665, 1390, 1789, 2130, 2285 |
| Bse118I | RCCGGY | 2 cut(s) | 25, 1096 |
| Bse1I | ACTGG | 7 cut(s) | 193, 213, 237, 947, 1220, 1384, 2089 |
| Bse21I | CCTNAGG | 1 cut(s) | 2284 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2299 |
| BseAI | TCCGGA | 2 cut(s) | 156, 2152 |
| BseBI | CCWGG | 1 cut(s) | 333 |
| BseCI | ATCGAT | 2 cut(s) | 165, 402 |
| BseDI | CCNNGG | 3 cut(s) | 129, 1338, 2056 |
| BseGI | GGATG | 4 cut(s) | 1348, 1995, 2254, 2279 |
| BseJI | GATNNNNATC | 1 cut(s) | 2299 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 665, 1390, 1789, 2130, 2285 |
| BseMII | CTCAG | 4 cut(s) | 759, 2232, 2298, 2304 |
| BseNI | ACTGG | 7 cut(s) | 193, 213, 237, 947, 1220, 1384, 2089 |
| BseRI | GAGGAG | 4 cut(s) | 357, 406, 1188, 1429 |
| BseSI | GKGCMC | 1 cut(s) | 2066 |
| BseX3I | CGGCCG | 1 cut(s) | 1289 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 364 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1292 |
| BshFI | GGCC | 2 cut(s) | 1291, 2272 |
| BshNI | GGYRCC | 1 cut(s) | 1907 |
| BshTI | ACCGGT | 2 cut(s) | 25, 1096 |
| BshVI | ATCGAT | 2 cut(s) | 165, 402 |
| BsiEI | CGRYCG | 1 cut(s) | 1292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2066 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2057 |
| BslFI | GGGAC | 4 cut(s) | 1583, 1805, 1883, 1951 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 665, 1390, 1789, 2130, 2285 |
| BsmAI | GTCTC | 4 cut(s) | 633, 1358, 1480, 2210 |
| BsmBI | CGTCTC | 1 cut(s) | 1358 |
| BsmFI | GGGAC | 4 cut(s) | 1583, 1805, 1883, 1951 |
| BsmI | GAATGC | 1 cut(s) | 1631 |
| BsnI | GGCC | 2 cut(s) | 1291, 2272 |
| BsoBI | CYCGRG | 1 cut(s) | 2057 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2066 |
| Bsp13I | TCCGGA | 2 cut(s) | 156, 2152 |
| Bsp1407I | TGTACA | 1 cut(s) | 1809 |
| Bsp19I | CCATGG | 1 cut(s) | 129 |
| BspACI | CCGC | 9 cut(s) | 31, 364, 367, 386, 846, 968, 1288, 1969, 2306 |
| BspANI | GGCC | 2 cut(s) | 1291, 2272 |
| BspCNI | CTCAG | 4 cut(s) | 760, 2233, 2297, 2303 |
| BspDI | ATCGAT | 2 cut(s) | 165, 402 |
| BspEI | TCCGGA | 2 cut(s) | 156, 2152 |
| BspFNI | CGCG | 1 cut(s) | 364 |
| BspHI | TCATGA | 1 cut(s) | 709 |
| BspLI | GGNNCC | 4 cut(s) | 1756, 1909, 1995, 2054 |
| BspMI | ACCTGC | 3 cut(s) | 404, 644, 716 |
| BspPI | GGATC | 9 cut(s) | 150, 1243, 1492, 1537, 1749, 1762, 2086, 2141, 2302 |
| BspQI | GCTCTTC | 1 cut(s) | 2217 |
| BspT107I | GGYRCC | 1 cut(s) | 1907 |
| BspTI | CTTAAG | 2 cut(s) | 1190, 2198 |
| BsrFI | RCCGGY | 2 cut(s) | 25, 1096 |
| BsrGI | TGTACA | 1 cut(s) | 1809 |
| BsrI | ACTGG | 7 cut(s) | 193, 213, 237, 947, 1220, 1384, 2089 |
| BssAI | RCCGGY | 2 cut(s) | 25, 1096 |
| BssECI | CCNNGG | 3 cut(s) | 129, 1338, 2056 |
| BssNI | GRCGYC | 1 cut(s) | 1899 |
| BssSI | CACGAG | 1 cut(s) | 963 |
| BssT1I | CCWWGG | 1 cut(s) | 129 |
| Bst2BI | CACGAG | 1 cut(s) | 963 |
| Bst2UI | CCWGG | 1 cut(s) | 333 |
| Bst4CI | ACNGT | 7 cut(s) | 377, 997, 1147, 1450, 1832, 1912, 2068 |
| Bst6I | CTCTTC | 4 cut(s) | 334, 1306, 1356, 2217 |
| BstACI | GRCGYC | 1 cut(s) | 1899 |
| BstAFI | CTTAAG | 2 cut(s) | 1190, 2198 |
| BstAUI | TGTACA | 1 cut(s) | 1809 |
| BstC8I | GCNNGC | 1 cut(s) | 1411 |
| BstDEI | CTNAG | 5 cut(s) | 768, 1661, 2241, 2284, 2290 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 4 cut(s) | 1348, 1995, 2254, 2279 |
| BstFNI | CGCG | 1 cut(s) | 364 |
| BstHHI | GCGC | 1 cut(s) | 364 |
| BstMAI | GTCTC | 4 cut(s) | 633, 1358, 1480, 2210 |
| BstMCI | CGRYCG | 1 cut(s) | 1292 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 575, 2061 |
| BstNI | CCWGG | 1 cut(s) | 333 |
| BstNSI | RCATGY | 1 cut(s) | 1413 |
| BstSCI | CCNGG | 4 cut(s) | 138, 331, 1231, 2217 |
| BstSLI | GKGCMC | 1 cut(s) | 2066 |
| BstUI | CGCG | 1 cut(s) | 364 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 66 |
| BstX2I | RGATCY | 3 cut(s) | 1484, 1754, 2091 |
| BstYI | RGATCY | 3 cut(s) | 1484, 1754, 2091 |
| BstZI | CGGCCG | 1 cut(s) | 1289 |
| Bsu15I | ATCGAT | 2 cut(s) | 165, 402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2284 |
| BsuI | GTATCC | 2 cut(s) | 1387, 1462 |
| BsuRI | GGCC | 2 cut(s) | 1291, 2272 |
| BsuTUI | ATCGAT | 2 cut(s) | 165, 402 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtrI | CACGTC | 1 cut(s) | 1160 |
| BtsCI | GGATG | 4 cut(s) | 1348, 1995, 2254, 2279 |
| BtsI | GCAGTG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 5 cut(s) | 75, 90, 220, 244, 2064 |
| BveI | ACCTGC | 3 cut(s) | 404, 644, 716 |
| Cac8I | GCNNGC | 1 cut(s) | 1411 |
| CciI | TCATGA | 1 cut(s) | 709 |
| CfoI | GCGC | 1 cut(s) | 364 |
| Cfr10I | RCCGGY | 2 cut(s) | 25, 1096 |
| Cfr13I | GGNCC | 3 cut(s) | 539, 656, 2271 |
| ClaI | ATCGAT | 2 cut(s) | 165, 402 |
| CseI | GACGC | 6 cut(s) | 58, 74, 419, 1907, 2189, 2216 |
| CspAI | ACCGGT | 2 cut(s) | 25, 1096 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1054, 1089 |
| CviAII | CATG | 5 cut(s) | 38, 130, 590, 710, 1410 |
| DdeI | CTNAG | 5 cut(s) | 768, 1661, 2241, 2284, 2290 |
| DriI | GACNNNNNGTC | 2 cut(s) | 70, 1963 |
| EaeI | YGGCCR | 1 cut(s) | 1289 |
| EagI | CGGCCG | 1 cut(s) | 1289 |
| Eam1104I | CTCTTC | 4 cut(s) | 334, 1306, 1356, 2217 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 70, 1963 |
| EarI | CTCTTC | 4 cut(s) | 334, 1306, 1356, 2217 |
| EclXI | CGGCCG | 1 cut(s) | 1289 |
| Eco130I | CCWWGG | 1 cut(s) | 129 |
| Eco32I | GATATC | 2 cut(s) | 1249, 1694 |
| Eco47I | GGWCC | 2 cut(s) | 539, 656 |
| Eco52I | CGGCCG | 1 cut(s) | 1289 |
| Eco57I | CTGAAG | 2 cut(s) | 564, 588 |
| Eco81I | CCTNAGG | 1 cut(s) | 2284 |
| Eco88I | CYCGRG | 1 cut(s) | 2057 |
| EcoO109I | RGGNCCY | 2 cut(s) | 656, 2271 |
| EcoRII | CCWGG | 1 cut(s) | 331 |
| EcoRV | GATATC | 2 cut(s) | 1249, 1694 |
| EcoT14I | CCWWGG | 1 cut(s) | 129 |
| EcoT22I | ATGCAT | 1 cut(s) | 1631 |
| ErhI | CCWWGG | 1 cut(s) | 129 |
| Esp3I | CGTCTC | 1 cut(s) | 1358 |
| FaeI | CATG | 5 cut(s) | 41, 133, 593, 713, 1413 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1041, 1073, 1581, 1613, 1743, 1775 |
| FaqI | GGGAC | 4 cut(s) | 1583, 1805, 1883, 1951 |
| FatI | CATG | 5 cut(s) | 37, 129, 589, 709, 1409 |
| FauI | CCCGC | 1 cut(s) | 1976 |
| FbaI | TGATCA | 1 cut(s) | 1603 |
| Fnu4HI | GCNGC | 4 cut(s) | 32, 180, 365, 1289 |
| FokI | GGATG | 4 cut(s) | 1355, 2002, 2241, 2266 |
| Fsp4HI | GCNGC | 4 cut(s) | 32, 180, 365, 1289 |
| FspBI | CTAG | 8 cut(s) | 311, 354, 471, 660, 681, 1763, 2108, 2177 |
| GlaI | GCGC | 1 cut(s) | 363 |
| GluI | GCNGC | 4 cut(s) | 32, 180, 365, 1289 |
| GsuI | CTGGAG | 2 cut(s) | 1203, 1980 |
| HaeIII | GGCC | 2 cut(s) | 1291, 2272 |
| HgaI | GACGC | 6 cut(s) | 58, 74, 419, 1907, 2189, 2216 |
| HhaI | GCGC | 1 cut(s) | 364 |
| Hin1I | GRCGYC | 1 cut(s) | 1899 |
| Hin1II | CATG | 5 cut(s) | 41, 133, 593, 713, 1413 |
| Hin6I | GCGC | 1 cut(s) | 362 |
| HinP1I | GCGC | 1 cut(s) | 362 |
| HincII | GTYRAC | 2 cut(s) | 222, 1514 |
| HindII | GTYRAC | 2 cut(s) | 222, 1514 |
| HpaI | GTTAAC | 1 cut(s) | 222 |
| Hpy166II | GTNNAC | 7 cut(s) | 222, 898, 1514, 1812, 1897, 2064, 2082 |
| Hpy8I | GTNNAC | 7 cut(s) | 222, 898, 1514, 1812, 1897, 2064, 2082 |
| Hpy99I | CGWCG | 2 cut(s) | 16, 52 |
| HpyAV | CCTTC | 6 cut(s) | 97, 213, 1769, 2008, 2133, 2262 |
| HpyCH4III | ACNGT | 7 cut(s) | 377, 997, 1147, 1450, 1832, 1912, 2068 |
| HpyCH4IV | ACGT | 2 cut(s) | 957, 1159 |
| HpyCH4V | TGCA | 6 cut(s) | 1629, 1655, 1883, 1922, 2064, 2237 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 575, 2061 |
| HpyF3I | CTNAG | 5 cut(s) | 768, 1661, 2241, 2284, 2290 |
| HpySE526I | ACGT | 2 cut(s) | 957, 1159 |
| Hsp92I | GRCGYC | 1 cut(s) | 1899 |
| Hsp92II | CATG | 5 cut(s) | 41, 133, 593, 713, 1413 |
| HspAI | GCGC | 1 cut(s) | 362 |
| Kpn2I | TCCGGA | 2 cut(s) | 156, 2152 |
| Ksp22I | TGATCA | 1 cut(s) | 1603 |
| KspAI | GTTAAC | 1 cut(s) | 222 |
| LguI | GCTCTTC | 1 cut(s) | 2217 |
| LmnI | GCTCC | 5 cut(s) | 187, 586, 1270, 1999, 2052 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 3 cut(s) | 373, 556, 1684 |
| MaeI | CTAG | 8 cut(s) | 311, 354, 471, 660, 681, 1763, 2108, 2177 |
| MaeII | ACGT | 2 cut(s) | 957, 1159 |
| MaeIII | GTNAC | 5 cut(s) | 21, 1087, 1433, 1744, 2027 |
| MflI | RGATCY | 3 cut(s) | 1484, 1754, 2091 |
| MhlI | GDGCHC | 1 cut(s) | 2066 |
| MluCI | AATT | 8 cut(s) | 232, 306, 754, 813, 927, 1650, 1720, 2210 |
| MlyI | GAGTC | 6 cut(s) | 95, 115, 489, 779, 1430, 1787 |
| MmeI | TCCRAC | 3 cut(s) | 123, 1368, 2255 |
| Mph1103I | ATGCAT | 1 cut(s) | 1631 |
| MroI | TCCGGA | 2 cut(s) | 156, 2152 |
| MslI | CAYNNNNRTG | 2 cut(s) | 903, 1624 |
| MspA1I | CMGCKG | 1 cut(s) | 2042 |
| MspCI | CTTAAG | 2 cut(s) | 1190, 2198 |
| MspR9I | CCNGG | 4 cut(s) | 140, 333, 1233, 2219 |
| Mva1269I | GAATGC | 1 cut(s) | 1631 |
| MvaI | CCWGG | 1 cut(s) | 333 |
| MvnI | CGCG | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 575, 2061 |
| NciI | CCSGG | 3 cut(s) | 140, 1233, 2219 |
| NcoI | CCATGG | 1 cut(s) | 129 |
| NlaIII | CATG | 5 cut(s) | 41, 133, 593, 713, 1413 |
| NlaIV | GGNNCC | 4 cut(s) | 1756, 1909, 1995, 2054 |
| NmeAIII | GCCGAG | 3 cut(s) | 1317, 1363, 2164 |
| NmuCI | GTSAC | 2 cut(s) | 21, 1433 |
| NsiI | ATGCAT | 1 cut(s) | 1631 |
| NspI | RCATGY | 1 cut(s) | 1413 |
| PaeI | GCATGC | 1 cut(s) | 1413 |
| PagI | TCATGA | 1 cut(s) | 709 |
| PaqCI | CACCTGC | 1 cut(s) | 404 |
| PciSI | GCTCTTC | 1 cut(s) | 2217 |
| PctI | GAATGC | 1 cut(s) | 1631 |
| PfeI | GAWTC | 8 cut(s) | 95, 147, 162, 250, 422, 463, 691, 1786 |
| PfoI | TCCNGGA | 2 cut(s) | 138, 1231 |
| PinAI | ACCGGT | 2 cut(s) | 25, 1096 |
| PkrI | GCNGC | 4 cut(s) | 33, 181, 366, 1290 |
| PleI | GAGTC | 6 cut(s) | 95, 115, 488, 778, 1430, 1787 |
| PpsI | GAGTC | 6 cut(s) | 95, 115, 488, 778, 1430, 1787 |
| PpuMI | RGGWCCY | 1 cut(s) | 656 |
| Psp1406I | AACGTT | 1 cut(s) | 957 |
| Psp5II | RGGWCCY | 1 cut(s) | 656 |
| Psp6I | CCWGG | 1 cut(s) | 331 |
| PspGI | CCWGG | 1 cut(s) | 331 |
| PspN4I | GGNNCC | 4 cut(s) | 1756, 1909, 1995, 2054 |
| PspPI | GGNCC | 3 cut(s) | 539, 656, 2271 |
| PspPPI | RGGWCCY | 1 cut(s) | 656 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 942, 974 |
| PsuI | RGATCY | 3 cut(s) | 1484, 1754, 2091 |
| PvuII | CAGCTG | 1 cut(s) | 2042 |
| RseI | CAYNNNNRTG | 2 cut(s) | 903, 1624 |
| SapI | GCTCTTC | 1 cut(s) | 2217 |
| SatI | GCNGC | 4 cut(s) | 32, 180, 365, 1289 |
| Sau96I | GGNCC | 3 cut(s) | 539, 656, 2271 |
| ScaI | AGTACT | 1 cut(s) | 951 |
| SchI | GAGTC | 6 cut(s) | 95, 115, 489, 779, 1430, 1787 |
| ScrFI | CCNGG | 4 cut(s) | 140, 333, 1233, 2219 |
| SduI | GDGCHC | 1 cut(s) | 2066 |
| SfaNI | GCATC | 3 cut(s) | 373, 556, 1684 |
| SgrAI | CRCCGGYG | 1 cut(s) | 25 |
| SinI | GGWCC | 2 cut(s) | 539, 656 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 903, 1624 |
| SmlI | CTYRAG | 6 cut(s) | 1190, 1441, 1640, 1670, 1736, 2198 |
| SmoI | CTYRAG | 6 cut(s) | 1190, 1441, 1640, 1670, 1736, 2198 |
| SpeI | ACTAGT | 2 cut(s) | 353, 470 |
| SphI | GCATGC | 1 cut(s) | 1413 |
| Sse9I | AATT | 8 cut(s) | 232, 306, 754, 813, 927, 1650, 1720, 2210 |
| SsiI | CCGC | 9 cut(s) | 31, 364, 367, 386, 846, 968, 1288, 1969, 2306 |
| SspI | AATATT | 1 cut(s) | 1684 |
| SspMI | CTAG | 8 cut(s) | 311, 354, 471, 660, 681, 1763, 2108, 2177 |
| StyD4I | CCNGG | 4 cut(s) | 138, 331, 1231, 2217 |
| StyI | CCWWGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 7 cut(s) | 377, 997, 1147, 1450, 1832, 1912, 2068 |
| TaiI | ACGT | 2 cut(s) | 960, 1162 |
| TaqI | TCGA | 7 cut(s) | 145, 165, 402, 478, 483, 773, 881 |
| TasI | AATT | 8 cut(s) | 232, 306, 754, 813, 927, 1650, 1720, 2210 |
| TatI | WGTACW | 4 cut(s) | 949, 1445, 1809, 2081 |
| TauI | GCSGC | 3 cut(s) | 34, 367, 1291 |
| TfiI | GAWTC | 8 cut(s) | 95, 147, 162, 250, 422, 463, 691, 1786 |
| TscAI | CASTG | 5 cut(s) | 75, 97, 220, 244, 2071 |
| TseFI | GTSAC | 2 cut(s) | 21, 1433 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 21, 1433 |
| TspDTI | ATGAA | 9 cut(s) | 17, 273, 335, 704, 1223, 1341, 1563, 1849, 2182 |
| TspGWI | ACGGA | 2 cut(s) | 259, 2303 |
| TspRI | CASTG | 5 cut(s) | 75, 97, 220, 244, 2071 |
| Vha464I | CTTAAG | 2 cut(s) | 1190, 2198 |
| VneI | GTGCAC | 1 cut(s) | 2062 |
| VpaK11BI | GGWCC | 2 cut(s) | 539, 656 |
| XapI | RAATTY | 2 cut(s) | 306, 1720 |
| XbaI | TCTAGA | 2 cut(s) | 1762, 2107 |
| XceI | RCATGY | 1 cut(s) | 1413 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2046 |
| XspI | CTAG | 8 cut(s) | 311, 354, 471, 660, 681, 1763, 2108, 2177 |
| ZrmI | AGTACT | 1 cut(s) | 951 |
| Zsp2I | ATGCAT | 1 cut(s) | 1631 |