Rmu_sc0006084.1_g000016

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006084.1
Physical Location & Seq
Forward (+)
82235 .. 86439
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006084.1_g000016.1.cds

Sequence Viewer

Length: 963 bp
atggatgatcaagatcttcaagtaggggatgttatttctccaactctcttaacagcagttagagaacttcaatatgtgatgcgatataagggtgattgtttcaaggattttaaccagtattttagggagattgcttttctgagtcagtttcaacatcagaacatagttcagtattatggcacacaaaaggatgaatcaaagctctatatctttctggaacttgtaaccaaaggctcccttcaaaagctatatcaaacgcaccctcttacagattcacatgtctctgtatacactagacagatcttgcaaggtctgaagtatcttcacgaccaaaatgtgattcacagggacattaaatgcgcaaatattttggtgcatgctaatggatctgtcaagcttgctgactttggattggcaaaggctatcaaaatgaacgaaaaactatcttgccaaggaactgcaaactggatggcccctgaggttgttaatcatgaaagtcaaggttatggccttctggctgatatatggagtcttggatgtactgtgttggagatgttaactgggatggttccatactctgatctcgaatggatggcggcattatggaaaattggaaatgggaagctccctctggttcctgattctctttcaagagaggcacaagattttatccgtctatgcttacaagttgagccagataatcgtcccactgctgctcagcttttagaacatccatttgtaaataagccccttcctcccacatcttctggatcagtatctccttacaatcaccacaggcagactctattcgaccgaaagaagcaggatgacaactcatccatgttctataatttgctttggaatcccgtgttcagccatcaaatctttgcttatgctggtagagtgcgtgctggttataacttcagtgatggtctatgccagatctggcaatgggatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.7

Weight (kDa)

6.25

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
Acc16I TGCGCA 1 cut(s) 361
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 596
AclWI GGATC 2 cut(s) 394, 778
AcuI CTGAAG 2 cut(s) 335, 907
AfaI GTAC 1 cut(s) 541
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 6 cut(s) 20, 71, 103, 152, 242, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 5 cut(s) 202, 247, 397, 625, 721
AluI AGCT 5 cut(s) 202, 247, 397, 625, 721
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 2 cut(s) 394, 778
AoxI GGCC 2 cut(s) 471, 508
ApeKI GCWGC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 104, 782
AxyI CCTNAGG 1 cut(s) 477
BbvI GCAGC 1 cut(s) 700
BccI CCATC 5 cut(s) 463, 559, 586, 885, 923
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 294
BglII AGATCT 3 cut(s) 13, 300, 942
BisI GCNGC 2 cut(s) 597, 714
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 2 cut(s) 598, 715
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 4 cut(s) 235, 474, 570, 636
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 717
BsaBI GATNNNNATC 2 cut(s) 12, 775
BsaJI CCNNGG 1 cut(s) 451
Bse1I ACTGG 3 cut(s) 115, 470, 565
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 956
Bse8I GATNNNNATC 2 cut(s) 12, 775
BseDI CCNNGG 1 cut(s) 451
BseJI GATNNNNATC 2 cut(s) 12, 775
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 3 cut(s) 131, 468, 731
BseNI ACTGG 3 cut(s) 115, 470, 565
BseXI GCAGC 1 cut(s) 700
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 2 cut(s) 473, 510
BsiEI CGRYCG 1 cut(s) 814
BslFI GGGAC 2 cut(s) 362, 690
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 362, 690
BsnI GGCC 2 cut(s) 473, 510
Bsp143I GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 1 cut(s) 596
BspANI GGCC 2 cut(s) 473, 510
BspCNI CTCAG 3 cut(s) 132, 469, 730
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 4 cut(s) 235, 474, 570, 636
BspPI GGATC 2 cut(s) 394, 778
BsrDI GCAATG 1 cut(s) 956
BsrI ACTGG 3 cut(s) 115, 470, 565
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 544
BstC8I GCNNGC 3 cut(s) 378, 399, 909
BstDEI CTNAG 3 cut(s) 140, 477, 717
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 7 cut(s) 10, 16, 303, 389, 583, 773, 945
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
BstMCI CGRYCG 1 cut(s) 814
BstNSI RCATGY 2 cut(s) 281, 380
BstV1I GCAGC 1 cut(s) 700
BstX2I RGATCY 4 cut(s) 13, 300, 386, 942
BstYI RGATCY 4 cut(s) 13, 300, 386, 942
BstZ17I GTATAC 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 473, 510
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 931
Cac8I GCNNGC 3 cut(s) 378, 399, 909
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 540
CviAII CATG 4 cut(s) 278, 377, 491, 841
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 3 cut(s) 140, 477, 717
DpnI GATC 7 cut(s) 9, 15, 302, 388, 582, 772, 944
DpnII GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
Eco130I CCWWGG 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 335, 907
Eco81I CCTNAGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 281, 380, 494, 844
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 2 cut(s) 362, 690
FatI CATG 4 cut(s) 277, 376, 490, 840
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 597, 714
Fsp4HI GCNGC 2 cut(s) 597, 714
FspBI CTAG 1 cut(s) 294
FspI TGCGCA 1 cut(s) 361
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 597, 714
HaeIII GGCC 2 cut(s) 473, 510
HhaI GCGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 281, 380, 494, 844
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 8 cut(s) 142, 194, 272, 340, 529, 641, 802, 862
HpaI GTTAAC 1 cut(s) 558
HphI GGTGA 2 cut(s) 104, 782
Hpy166II GTNNAC 2 cut(s) 289, 558
Hpy188I TCNGA 4 cut(s) 141, 159, 315, 580
Hpy188III TCNNGA 8 cut(s) 11, 215, 326, 491, 584, 638, 651, 768
Hpy8I GTNNAC 2 cut(s) 289, 558
HpyAV CCTTC 3 cut(s) 248, 521, 761
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 3 cut(s) 307, 376, 461
HpyF3I CTNAG 3 cut(s) 140, 477, 717
Hsp92II CATG 4 cut(s) 281, 380, 494, 844
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 558
Kzo9I GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
LmnI GCTCC 2 cut(s) 239, 630
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 223
MalI GATC 7 cut(s) 9, 15, 302, 388, 582, 772, 944
MboI GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
MboII GAAGA 3 cut(s) 8, 314, 756
MflI RGATCY 4 cut(s) 13, 300, 386, 942
MluCI AATT 2 cut(s) 609, 850
MlyI GAGTC 3 cut(s) 151, 538, 796
MmeI TCCRAC 2 cut(s) 65, 528
MnlI CCTC 5 cut(s) 273, 472, 639, 649, 765
MseI TTAA 5 cut(s) 50, 111, 354, 486, 557
MslI CAYNNNNRTG 1 cut(s) 381
NdeII GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
NlaIII CATG 4 cut(s) 281, 380, 494, 844
NlaIV GGNNCC 4 cut(s) 235, 474, 570, 636
NsbI TGCGCA 1 cut(s) 361
NspI RCATGY 2 cut(s) 281, 380
PaeI GCATGC 1 cut(s) 380
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 277
PfeI GAWTC 5 cut(s) 194, 272, 340, 641, 862
PkrI GCNGC 2 cut(s) 598, 715
PleI GAGTC 3 cut(s) 150, 537, 796
PpsI GAGTC 3 cut(s) 150, 537, 796
PscI ACATGT 1 cut(s) 277
PsiI TTATAA 1 cut(s) 918
PspN4I GGNNCC 4 cut(s) 235, 474, 570, 636
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 4 cut(s) 13, 300, 386, 942
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 5 cut(s) 50, 111, 354, 486, 557
SatI GCNGC 2 cut(s) 597, 714
Sau3AI GATC 7 cut(s) 7, 13, 300, 386, 580, 770, 942
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 3 cut(s) 151, 538, 796
SetI ASST 8 cut(s) 204, 249, 313, 399, 483, 505, 627, 723
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 381
SphI GCATGC 1 cut(s) 380
Sse9I AATT 2 cut(s) 609, 850
SsiI CCGC 1 cut(s) 596
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 2 cut(s) 585, 810
TaqII GACCGA 1 cut(s) 828
TasI AATT 2 cut(s) 609, 850
TatI WGTACW 1 cut(s) 539
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 5 cut(s) 194, 272, 340, 641, 862
Tru1I TTAA 5 cut(s) 50, 111, 354, 486, 557
Tru9I TTAA 5 cut(s) 50, 111, 354, 486, 557
TscAI CASTG 2 cut(s) 715, 931
TseI GCWGC 1 cut(s) 713
TspDTI ATGAA 3 cut(s) 207, 446, 507
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 715, 931
XceI RCATGY 2 cut(s) 281, 380
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.