Rh7CG379000

Mitogen-activated protein kinase kinase kinase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
47788638 .. 47800363
11726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG379000.1

Sequence Viewer

Length: 1191 bp
ATGGAGGAAAATACCAGGTCAAAAGTAGTTGTTGAGAGTGTTCATAACCAGGAGTCGACTCGTCAAGAGAGAGAGAGAGAGATGAAGAACATGGACGCCGCCAAGCAGAAGCCTCCGAAGCCGAGACTCGATCGCCAGAACGCGATCAAGAACATAGACTACGACGCCGATCAGTACTTCCCTAATCTCCGGACTGACCTTCTCGACCTCCCTCCTCTCTCCCACAACCAAACCAGCTTCCGCGTCAGAGGCATCGACGGCGAATTCGACCTCATCTGCCGCAGTCTCGGCTTCTTCTCCTCCGACTTCACCTCCCGCCCTCGCCTCCGCCAGAACGACGACGTTCCGGAACCTAGGGTTACGACCGCCGTAAAAACTGGCGGCGGAGGAGGAAGTAGGGGTGTCCGGCCCCCGCCGGTTGTGTTAAAATCTTCTGCTTTTTATCCTCCGCAAGACCACATAAATTGGCCTATTCCTGCTGATGACGTCAGCTCTTCGGAGGAAGAGGACGATGTGCGTGATTGGAGTGAAGGTTGGTATGAACCGCATGGGTTGGCTGATTCTGACACAGACTCATCTCCGTTGCATAATTATGGTGTCGGTGTTGGTATTGATGTGAGGGTGCAGCCAAAACGTAATGGGAAGTTCAGACGCAGTGTTTCGTCTTCGTGGCAAAAGGGTCAGCTTTTGGGGAGTGGTTCCTATGGAGCTGTCTATGAAGGCTTTACTGATGATGGATTCTTTTTTGCTGTAAAGGAGGTTTCTTTACTTGATCAAGGAAGCCAGGGAAAGCAGAGTCTTCTACAACTTGAGCAGGAGATTTCTCTTTTAAGTCAGTTTGAACATGACAACATTGTTGAGTATCTCGGTACAGACAAGGATGAGACTAAGCTCTATATCTTTCTTGAGCTTGTAACAAAAGGATCACTTGCAAGTCTCTATTCAAAGTATCTCTTGAGGGATTCTCAAGTCTCTCTGTTCACAAGGCAGATTTTGAGTGGCTTGAAATATCTTCATGATCGTAATGTGCTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGCAAGTGGATCTGTGAAACTTGCAGATTTTGGTTTAGCTAAGGCAACCAACATGAACGATGTGAAGTCTTGCAAAGGGACTGCCTATTGGATGGCCCCAGAGGTTGGTCTCCTCTCTGTTTGA

Protein Analysis

396

Amino Acids

44.38

Weight (kDa)

5.5

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 224 - 391 2.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 227 - 391 5.4e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccI GTMKAC 1 cut(s) 56
AccII CGCG 2 cut(s) 143, 243
AccIII TCCGGA 2 cut(s) 189, 346
AclWI GGATC 2 cut(s) 931, 1084
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 3 cut(s) 96, 165, 486
AfaI GTAC 2 cut(s) 176, 871
AfiI CCNNNNNNNGG 1 cut(s) 1172
AgsI TTSAA 3 cut(s) 842, 945, 1006
AjnI CCWGG 3 cut(s) 14, 48, 783
AluBI AGCT 7 cut(s) 237, 492, 685, 710, 892, 910, 1106
AluI AGCT 7 cut(s) 237, 492, 685, 710, 892, 910, 1106
Alw26I GTCTC 6 cut(s) 118, 290, 878, 941, 976, 1181
AlwI GGATC 2 cut(s) 931, 1084
Aor13HI TCCGGA 2 cut(s) 189, 346
AoxI GGCC 3 cut(s) 407, 467, 1161
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspA2I CCTAGG 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 408, 1162
AsuHPI GGTGA 1 cut(s) 301
AvrII CCTAGG 1 cut(s) 353
BbsI GAAGAC 2 cut(s) 657, 791
BbvI GCAGC 1 cut(s) 637
BccI CCATC 2 cut(s) 728, 1153
BceAI ACGGC 2 cut(s) 274, 353
BciT130I CCWGG 3 cut(s) 16, 50, 785
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 6 cut(s) 118, 290, 878, 941, 976, 1181
BfaI CTAG 1 cut(s) 354
BisI GCNGC 4 cut(s) 99, 280, 382, 626
BlnI CCTAGG 1 cut(s) 353
BlsI GCNGC 4 cut(s) 100, 281, 383, 627
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 16, 50, 785
BmgT120I GGNCC 2 cut(s) 408, 1162
BmiI GGNNCC 4 cut(s) 351, 410, 700, 1164
BmrFI CCNGG 3 cut(s) 16, 50, 785
BmsI GCATC 2 cut(s) 261, 1057
BpiI GAAGAC 2 cut(s) 657, 791
BplI GAGNNNNNCTC 2 cut(s) 949, 981
Bpu10I CCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 4 cut(s) 830, 926, 951, 976
BsaHI GRCGYC 3 cut(s) 96, 165, 486
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 2 cut(s) 353, 784
BsaWI WCCGGW 2 cut(s) 189, 346
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 517, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 1172
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 382
BseAI TCCGGA 2 cut(s) 189, 346
BseBI CCWGG 3 cut(s) 16, 50, 785
BseDI CCNNGG 2 cut(s) 353, 784
BseGI GGATG 3 cut(s) 886, 1072, 1164
BseLI CCNNNNNNNGG 1 cut(s) 1172
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 4 cut(s) 204, 289, 402, 1169
BseXI GCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 2 cut(s) 143, 243
Bsh1285I CGRYCG 2 cut(s) 133, 366
BshFI GGCC 3 cut(s) 409, 469, 1163
BsiEI CGRYCG 2 cut(s) 133, 366
BsiSI CCGG 4 cut(s) 190, 347, 406, 416
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 1 cut(s) 1172
BsmAI GTCTC 6 cut(s) 118, 290, 878, 941, 976, 1181
BsmFI GGGAC 1 cut(s) 1159
BsnI GGCC 3 cut(s) 409, 469, 1163
Bso31I GGTCTC 1 cut(s) 1181
Bsp13I TCCGGA 2 cut(s) 189, 346
Bsp143I GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
BspANI GGCC 3 cut(s) 409, 469, 1163
BspEI TCCGGA 2 cut(s) 189, 346
BspFNI CGCG 2 cut(s) 143, 243
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 4 cut(s) 351, 410, 700, 1164
BspPI GGATC 2 cut(s) 931, 1084
BspQI GCTCTTC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 1181
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 353, 784
BssMI GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
BssNI GRCGYC 3 cut(s) 96, 165, 486
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 3 cut(s) 16, 50, 785
Bst6I CTCTTC 2 cut(s) 498, 499
BstACI GRCGYC 3 cut(s) 96, 165, 486
BstDEI CTNAG 2 cut(s) 888, 1107
BstF5I GGATG 3 cut(s) 886, 1072, 1164
BstFNI CGCG 2 cut(s) 143, 243
BstKTI GATC 7 cut(s) 133, 147, 172, 775, 926, 1021, 1079
BstMAI GTCTC 6 cut(s) 118, 290, 878, 941, 976, 1181
BstMBI GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
BstMCI CGRYCG 2 cut(s) 133, 366
BstMWI GCNNNNNNNGC 4 cut(s) 118, 249, 258, 288
BstNI CCWGG 3 cut(s) 16, 50, 785
BstSCI CCNGG 3 cut(s) 14, 48, 783
BstUI CGCG 2 cut(s) 143, 243
BstV1I GCAGC 1 cut(s) 637
BstV2I GAAGAC 2 cut(s) 657, 791
BstX2I RGATCY 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 1076
BsuRI GGCC 3 cut(s) 409, 469, 1163
BtsCI GGATG 3 cut(s) 886, 1072, 1164
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
CciI TCATGA 1 cut(s) 1015
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 408, 1162
CseI GACGC 4 cut(s) 104, 173, 232, 660
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 2 cut(s) 175, 870
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 5 cut(s) 91, 548, 845, 1016, 1120
CviQI GTAC 2 cut(s) 175, 870
DdeI CTNAG 2 cut(s) 888, 1107
DpnI GATC 7 cut(s) 132, 146, 171, 774, 925, 1020, 1078
DpnII GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
Eam1104I CTCTTC 2 cut(s) 498, 499
EarI CTCTTC 2 cut(s) 498, 499
EciI GGCGGA 2 cut(s) 317, 399
Eco130I CCWWGG 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 1181
Eco32I GATATC 1 cut(s) 1042
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 3 cut(s) 14, 48, 783
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 5 cut(s) 94, 551, 848, 1019, 1123
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 938, 970
FaqI GGGAC 1 cut(s) 1159
FatI CATG 5 cut(s) 90, 547, 844, 1015, 1119
FauI CCCGC 2 cut(s) 323, 420
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 4 cut(s) 99, 280, 382, 626
FokI GGATG 3 cut(s) 893, 1079, 1171
Fsp4HI GCNGC 4 cut(s) 99, 280, 382, 626
FspBI CTAG 1 cut(s) 354
GluI GCNGC 4 cut(s) 99, 280, 382, 626
HaeIII GGCC 3 cut(s) 409, 469, 1163
HapII CCGG 4 cut(s) 190, 347, 406, 416
HgaI GACGC 4 cut(s) 104, 173, 232, 660
Hin1I GRCGYC 3 cut(s) 96, 165, 486
Hin1II CATG 5 cut(s) 94, 551, 848, 1019, 1123
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 8 cut(s) 53, 58, 126, 560, 572, 738, 796, 962
HpaII CCGG 4 cut(s) 190, 347, 406, 416
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 57, 981
Hpy188I TCNGA 6 cut(s) 117, 248, 304, 499, 565, 650
Hpy188III TCNNGA 8 cut(s) 65, 148, 190, 203, 347, 905, 955, 1016
Hpy8I GTNNAC 2 cut(s) 57, 981
Hpy99I CGWCG 4 cut(s) 167, 260, 341, 344
HpyAV CCTTC 3 cut(s) 209, 524, 713
HpyCH4IV ACGT 3 cut(s) 342, 486, 634
HpyCH4V TGCA 6 cut(s) 586, 625, 932, 1070, 1091, 1140
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 249, 258, 288
HpyF3I CTNAG 2 cut(s) 888, 1107
HpySE526I ACGT 3 cut(s) 342, 486, 634
Hsp92I GRCGYC 3 cut(s) 96, 165, 486
Hsp92II CATG 5 cut(s) 94, 551, 848, 1019, 1123
Kpn2I TCCGGA 2 cut(s) 189, 346
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
LguI GCTCTTC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 2 cut(s) 261, 1057
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 1 cut(s) 354
MaeII ACGT 3 cut(s) 342, 486, 634
MaeIII GTNAC 2 cut(s) 358, 913
MalI GATC 7 cut(s) 132, 146, 171, 774, 925, 1020, 1078
MboI GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
MboII GAAGA 8 cut(s) 97, 286, 423, 486, 515, 657, 791, 1004
MflI RGATCY 1 cut(s) 1076
MluCI AATT 3 cut(s) 263, 463, 589
MlyI GAGTC 5 cut(s) 52, 62, 120, 566, 805
MmeI TCCRAC 1 cut(s) 327
MroI TCCGGA 2 cut(s) 189, 346
MseI TTAA 2 cut(s) 425, 830
MslI CAYNNNNRTG 1 cut(s) 591
MspI CCGG 4 cut(s) 190, 347, 406, 416
MspR9I CCNGG 3 cut(s) 16, 50, 785
MvaI CCWGG 3 cut(s) 16, 50, 785
MvnI CGCG 2 cut(s) 143, 243
MwoI GCNNNNNNNGC 4 cut(s) 118, 249, 258, 288
NdeII GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
NlaIII CATG 5 cut(s) 94, 551, 848, 1019, 1123
NlaIV GGNNCC 4 cut(s) 351, 410, 700, 1164
NmeAIII GCCGAG 2 cut(s) 147, 267
PagI TCATGA 1 cut(s) 1015
PciSI GCTCTTC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 3 cut(s) 560, 738, 962
PflMI CCANNNNNTGG 1 cut(s) 1172
PkrI GCNGC 4 cut(s) 100, 281, 383, 627
Ple19I CGATCG 1 cut(s) 133
PleI GAGTC 5 cut(s) 52, 61, 120, 566, 804
PpsI GAGTC 5 cut(s) 52, 61, 120, 566, 804
Psp6I CCWGG 3 cut(s) 14, 48, 783
PspGI CCWGG 3 cut(s) 14, 48, 783
PspN4I GGNNCC 4 cut(s) 351, 410, 700, 1164
PspPI GGNCC 2 cut(s) 408, 1162
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
PsuI RGATCY 1 cut(s) 1076
PvuI CGATCG 1 cut(s) 133
RsaI GTAC 2 cut(s) 176, 871
RsaNI GTAC 2 cut(s) 175, 870
RseI CAYNNNNRTG 1 cut(s) 591
SalI GTCGAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 425, 830
SatI GCNGC 4 cut(s) 99, 280, 382, 626
Sau3AI GATC 7 cut(s) 130, 144, 169, 772, 923, 1018, 1076
Sau96I GGNCC 2 cut(s) 408, 1162
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 5 cut(s) 52, 62, 120, 566, 805
ScrFI CCNGG 3 cut(s) 16, 50, 785
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 2 cut(s) 261, 1057
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 4 cut(s) 809, 905, 955, 966
SmoI CTYRAG 4 cut(s) 809, 905, 955, 966
Sse9I AATT 3 cut(s) 263, 463, 589
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 3 cut(s) 14, 48, 783
StyI CCWWGG 1 cut(s) 353
TaiI ACGT 3 cut(s) 345, 489, 637
TaqI TCGA 5 cut(s) 56, 129, 204, 255, 267
TasI AATT 3 cut(s) 263, 463, 589
TatI WGTACW 1 cut(s) 174
TauI GCSGC 3 cut(s) 101, 282, 384
TfiI GAWTC 3 cut(s) 560, 738, 962
Tru1I TTAA 2 cut(s) 425, 830
Tru9I TTAA 2 cut(s) 425, 830
TscAI CASTG 1 cut(s) 661
TseI GCWGC 1 cut(s) 625
TspDTI ATGAA 6 cut(s) 32, 98, 555, 732, 1004, 1136
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 1172
XapI RAATTY 1 cut(s) 263
XmaJI CCTAGG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 56
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 487
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.