Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000243

Physical Location & Seq

Genomic Coordinates Forward (+)

34739854 .. 34745139

Gene Structure 5286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGCCGCCAAGCAGAAGCGTCCGAAGCCGAGACTCGATCGCCAGAACGCGTTCAACTACATAGACTACGACGCCGATCAGTACTTCCCTAATCTCCGGACTGACCTTCTCGACCTCCCTCCTCTCTCCCACAACCAAACCAGCTTCCGCGTCAGAGGCATCGACGGCGAATTCTACCTCAACTGCCGCAGCGCCCGCTCCTCCTCCGACTTCACCTCCCGCCCTCGCCTCCGCCAGAACGACGACGTTCCGGAACCTAGGGTTACGACCGCCGTAAAAATTGGCGGCGGAGGAGGAAGTAGGGGTGTCCGGCTCCCGCCGGTTGTGTTAAAATCTTCTGATGATGACGTCAGCTATTGGGAGGAAGAGGACGATGTGTATGAACCGCATGGGTTGGCTGATTCTGACACATACTCATCTCCTTTCAATAATTATGGTGTCGGTGTTGGTATTGATGTGAGGGTGCAGCCAAAACGTAATGGGAAGTTCAGACGCAGTGTTTTGTCTTCGTGGCAAAGGGGTCAGTTTTTGGGGAGTGGTTCCCATGGAGCTGTCTATGAAGGCTTTACTGATGATGGATTCTTTTTTGCTGTAAAGGAGGTTTCTTTACTTGATCAAGGAAGCCAGGGAAAGCAGAGTCTTTTACAACTTGAGCAGGAGATTCATCTTTTAAGTCAGTTTGATCATGACAACATTGTTCAGTATCTCGGTACAGACAAGGACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

243

Amino Acids

27.4

Weight (kDa)

5.38

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	173 - 239	1.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca	FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica	MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica	Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis	pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis	RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata	RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora	Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa	Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha	Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana	Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	2 cut(s)	53, 153
AccIII	TCCGGA	2 cut(s)	99, 253
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	3 cut(s)	6, 75, 351
AfaI	GTAC	2 cut(s)	86, 715
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	58, 430
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	3 cut(s)	147, 357, 554
AluI	AGCT	3 cut(s)	147, 357, 554
Alw26I	GTCTC	1 cut(s)	28
Aor13HI	TCCGGA	2 cut(s)	99, 253
ApeKI	GCWGC	2 cut(s)	192, 469
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	724
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	724
AvrII	CCTAGG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	204, 481
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	2 cut(s)	184, 260
BciT130I	CCWGG	1 cut(s)	629
BclI	TGATCA	2 cut(s)	616, 685
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	5 cut(s)	9, 190, 193, 289, 470
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	5 cut(s)	10, 191, 194, 290, 471
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	3 cut(s)	258, 317, 544
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	674
BsaHI	GRCGYC	3 cut(s)	6, 75, 351
BsaJI	CCNNGG	3 cut(s)	260, 547, 628
BsaWI	WCCGGW	2 cut(s)	99, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse118I	RCCGGY	1 cut(s)	322
BseAI	TCCGGA	2 cut(s)	99, 253
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	3 cut(s)	260, 547, 628
BseRI	GAGGAG	4 cut(s)	114, 193, 196, 309
BseXI	GCAGC	2 cut(s)	204, 481
BsgI	GTGCAG	1 cut(s)	488
Bsh1236I	CGCG	2 cut(s)	53, 153
Bsh1285I	CGRYCG	2 cut(s)	43, 273
BsiEI	CGRYCG	2 cut(s)	43, 273
BsiSI	CCGG	4 cut(s)	100, 254, 313, 323
BsmAI	GTCTC	1 cut(s)	28
Bsp13I	TCCGGA	2 cut(s)	99, 253
Bsp143I	GATC	4 cut(s)	40, 79, 616, 685
Bsp19I	CCATGG	1 cut(s)	547
BspEI	TCCGGA	2 cut(s)	99, 253
BspFNI	CGCG	2 cut(s)	53, 153
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	258, 317, 544
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	260, 547, 628
BssMI	GATC	4 cut(s)	40, 79, 616, 685
BssNI	GRCGYC	3 cut(s)	6, 75, 351
BssT1I	CCWWGG	2 cut(s)	260, 547
Bst2UI	CCWGG	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	3 cut(s)	6, 75, 351
BstC8I	GCNNGC	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	547
BstFNI	CGCG	2 cut(s)	53, 153
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	4 cut(s)	43, 82, 619, 688
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	4 cut(s)	40, 79, 616, 685
BstMCI	CGRYCG	2 cut(s)	43, 273
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 159, 168, 198
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	627
BstUI	CGCG	2 cut(s)	53, 153
BstV1I	GCAGC	2 cut(s)	204, 481
BstV2I	GAAGAC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	724
CseI	GACGC	5 cut(s)	11, 14, 83, 142, 504
Csp6I	GTAC	2 cut(s)	85, 714
CviAII	CATG	3 cut(s)	392, 548, 689
CviJI	RGCY	9 cut(s)	31, 147, 316, 357, 401, 472, 554, 567, 627
CviKI_1	RGCY	9 cut(s)	31, 147, 316, 357, 401, 472, 554, 567, 627
CviQI	GTAC	2 cut(s)	85, 714
DpnI	GATC	4 cut(s)	42, 81, 618, 687
DpnII	GATC	4 cut(s)	40, 79, 616, 685
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	2 cut(s)	224, 306
Eco130I	CCWWGG	2 cut(s)	260, 547
Eco47I	GGWCC	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	260, 547
ErhI	CCWWGG	2 cut(s)	260, 547
FaeI	CATG	3 cut(s)	395, 551, 692
FaiI	YATR	8 cut(s)	65, 384, 393, 415, 438, 549, 561, 690
FatI	CATG	3 cut(s)	391, 547, 688
FauI	CCCGC	3 cut(s)	206, 230, 327
FbaI	TGATCA	2 cut(s)	616, 685
Fnu4HI	GCNGC	5 cut(s)	9, 190, 193, 289, 470
Fsp4HI	GCNGC	5 cut(s)	9, 190, 193, 289, 470
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	9, 190, 193, 289, 470
HaeII	RGCGCY	1 cut(s)	198
HapII	CCGG	4 cut(s)	100, 254, 313, 323
HgaI	GACGC	5 cut(s)	11, 14, 83, 142, 504
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	3 cut(s)	6, 75, 351
Hin1II	CATG	3 cut(s)	395, 551, 692
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	5 cut(s)	36, 404, 582, 640, 664
HpaII	CCGG	4 cut(s)	100, 254, 313, 323
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	6 cut(s)	27, 158, 211, 343, 409, 494
Hpy188III	TCNNGA	4 cut(s)	100, 113, 254, 689
Hpy99I	CGWCG	4 cut(s)	77, 170, 248, 251
HpyAV	CCTTC	2 cut(s)	119, 557
HpyCH4IV	ACGT	3 cut(s)	249, 351, 478
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 159, 168, 198
HpySE526I	ACGT	3 cut(s)	249, 351, 478
Hsp92I	GRCGYC	3 cut(s)	6, 75, 351
Hsp92II	CATG	3 cut(s)	395, 551, 692
HspAI	GCGC	1 cut(s)	195
Kpn2I	TCCGGA	2 cut(s)	99, 253
Ksp22I	TGATCA	2 cut(s)	616, 685
Kzo9I	GATC	4 cut(s)	40, 79, 616, 685
LmnI	GCTCC	3 cut(s)	206, 321, 551
Lsp1109I	GCAGC	2 cut(s)	204, 481
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	249, 351, 478
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	42, 81, 618, 687
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	4 cut(s)	40, 79, 616, 685
MboII	GAAGA	3 cut(s)	330, 380, 501
MluCI	AATT	3 cut(s)	173, 282, 433
MluI	ACGCGT	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	30, 649
MmeI	TCCRAC	1 cut(s)	234
MroI	TCCGGA	2 cut(s)	99, 253
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	332, 674
MspI	CCGG	4 cut(s)	100, 254, 313, 323
MspR9I	CCNGG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	2 cut(s)	53, 153
MwoI	GCNNNNNNNGC	4 cut(s)	28, 159, 168, 198
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	4 cut(s)	40, 79, 616, 685
NlaIII	CATG	3 cut(s)	395, 551, 692
NlaIV	GGNNCC	3 cut(s)	258, 317, 544
NmeAIII	GCCGAG	1 cut(s)	57
PagI	TCATGA	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	404, 582, 664
PkrI	GCNGC	5 cut(s)	10, 191, 194, 290, 471
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	2 cut(s)	30, 648
PpsI	GAGTC	2 cut(s)	30, 648
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	3 cut(s)	258, 317, 544
PspPI	GGNCC	1 cut(s)	724
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	86, 715
RsaNI	GTAC	2 cut(s)	85, 714
SaqAI	TTAA	2 cut(s)	332, 674
SatI	GCNGC	5 cut(s)	9, 190, 193, 289, 470
Sau3AI	GATC	4 cut(s)	40, 79, 616, 685
Sau96I	GGNCC	1 cut(s)	724
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	30, 649
ScrFI	CCNGG	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	3 cut(s)	173, 282, 433
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	2 cut(s)	260, 547
TaiI	ACGT	3 cut(s)	252, 354, 481
TaqI	TCGA	3 cut(s)	39, 114, 165
TasI	AATT	3 cut(s)	173, 282, 433
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	3 cut(s)	11, 192, 291
TfiI	GAWTC	3 cut(s)	404, 582, 664
Tru1I	TTAA	2 cut(s)	332, 674
Tru9I	TTAA	2 cut(s)	332, 674
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	192, 469
TspDTI	ATGAA	3 cut(s)	399, 576, 656
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	724
XapI	RAATTY	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.