Rroxscaffold_5G00380490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000243
Physical Location & Seq
Reverse (-)
60629947 .. 60639487
9541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380490.1

Sequence Viewer

Length: 621 bp
ATGAGGAGGAGGAAGGAGGTGACGCCGTTTCGGTTAGTACTAAACCCAACGGTGAGTGGTCCGAACGATACAGAATCCGATTTGTCCGAATCGGACGACCCAAAAGCCGATTTCACCGATAAAAGGCCCGGTCTGCGGAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGACATACTATTAAGTTTCGTCGCCTACTTCGTCATCATCTCCATCCTCCTCGGTGGCTTTTTCGGTGACCCTAACGTGGTCAAAGTAGTCGGCGATGGAGGCCGCATCGGCCATTTTAGAAGGGAAATCGAGGCCGAGTCGCGTGGAACATTATTTGGAAACCCTGGTGACAGACATATACCCGCACAAACTGCAAGGAATAACGCAATTCACTCAGAGCGACAAAACAAATACACTTTAATTAAAGAAGCAACTAGCAAAGCAGGTGATGGTACACACAGAGAGTCCCACGTGCGCTGGAGACCCCTCTGCTGGTTTGCTAAGAAAACAAAACAGGTCCAACGGTTCATGGTCCTTTTGGACTCACCACCGCTACAAATCCAGAGTCCAACAATGAACAGAGTACAAGTTAATGGAGGGATCACATTCATAACCATCTTACAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.22

Weight (kDa)

10.25

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 425
AccII CGCG 1 cut(s) 313
AciI CCGC 5 cut(s) 136, 146, 274, 354, 542
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 280
AcvI CACGTG 1 cut(s) 463
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 3 cut(s) 39, 445, 576
AfiI CCNNNNNNNGG 4 cut(s) 123, 135, 247, 483
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 1 cut(s) 599
AoxI GGCC 4 cut(s) 125, 271, 280, 303
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 4 cut(s) 59, 126, 508, 523
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 7 cut(s) 31, 64, 106, 248, 350, 449, 528
AvaII GGWCC 3 cut(s) 59, 508, 523
BbrPI CACGTG 1 cut(s) 463
BccI CCATC 4 cut(s) 221, 260, 434, 614
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 2 cut(s) 147, 274
BlsI GCNGC 2 cut(s) 148, 275
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 129, 336
Bme18I GGWCC 3 cut(s) 59, 508, 523
BmgT120I GGNCC 4 cut(s) 59, 126, 508, 523
BmrFI CCNGG 2 cut(s) 129, 336
BmsI GCATC 2 cut(s) 133, 285
BpmI CTGGAG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 220, 334
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 135, 247, 483
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 220, 334
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 4 cut(s) 123, 135, 247, 483
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 3 cut(s) 19, 22, 209
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 4 cut(s) 127, 273, 282, 305
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 4 cut(s) 123, 135, 247, 483
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 4 cut(s) 127, 273, 282, 305
Bso31I GGTCTC 1 cut(s) 466
Bsp143I GATC 1 cut(s) 591
BspACI CCGC 5 cut(s) 136, 146, 274, 354, 542
BspANI GGCC 4 cut(s) 127, 273, 282, 305
BspCNI CTCAG 1 cut(s) 398
BspFNI CGCG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 220, 334
BssMI GATC 1 cut(s) 591
BssNI GRCGYC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 52, 516
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 385, 492
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 594
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 1 cut(s) 591
BstMWI GCNNNNNNNGC 5 cut(s) 133, 155, 270, 279, 362
BstNI CCWGG 1 cut(s) 336
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 127, 334
BstUI CGCG 1 cut(s) 313
BsuRI GGCC 4 cut(s) 127, 273, 282, 305
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 425
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 4 cut(s) 59, 126, 508, 523
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 38, 444, 575
CviAII CATG 1 cut(s) 520
CviJI RGCY 7 cut(s) 107, 127, 158, 228, 273, 282, 305
CviKI_1 RGCY 7 cut(s) 107, 127, 158, 228, 273, 282, 305
CviQI GTAC 3 cut(s) 38, 444, 575
DdeI CTNAG 2 cut(s) 385, 492
DpnI GATC 1 cut(s) 593
DpnII GATC 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 3 cut(s) 59, 508, 523
Eco72I CACGTG 1 cut(s) 463
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 523
FaiI YATR 5 cut(s) 176, 348, 350, 521, 602
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 519
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 147, 274
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 147, 274
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 467
GluI GCNGC 2 cut(s) 147, 274
GsuI CTGGAG 1 cut(s) 490
HaeIII GGCC 4 cut(s) 127, 273, 282, 305
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 468
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 6 cut(s) 74, 89, 308, 455, 533, 556
HpaII CCGG 1 cut(s) 129
HphI GGTGA 7 cut(s) 31, 64, 106, 248, 350, 449, 528
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 63, 79, 88, 94, 388
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 7, 285
HpyCH4III ACNGT 2 cut(s) 52, 516
HpyCH4IV ACGT 2 cut(s) 246, 462
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 155, 270, 279, 362
HpyF3I CTNAG 2 cut(s) 385, 492
HpySE526I ACGT 2 cut(s) 246, 462
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 591
LpnPI CCDG 8 cut(s) 142, 321, 348, 420, 454, 469, 491, 566
LweI GCATC 2 cut(s) 133, 285
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 246, 462
MaeIII GTNAC 4 cut(s) 19, 170, 236, 338
MalI GATC 1 cut(s) 593
MboI GATC 1 cut(s) 591
MluCI AATT 3 cut(s) 378, 411, 616
MlyI GAGTC 4 cut(s) 317, 464, 527, 565
MmeI TCCRAC 2 cut(s) 535, 584
MnlI CCTC 8 cut(s) 3, 10, 227, 230, 263, 295, 488, 581
MseI TTAA 5 cut(s) 152, 182, 410, 414, 582
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 129, 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 5 cut(s) 133, 155, 270, 279, 362
NciI CCSGG 1 cut(s) 129
NdeII GATC 1 cut(s) 591
NlaIII CATG 1 cut(s) 523
NmeAIII GCCGAG 1 cut(s) 331
NmuCI GTSAC 4 cut(s) 19, 170, 236, 338
PacI TTAATTAA 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 2 cut(s) 74, 89
PkrI GCNGC 2 cut(s) 148, 275
PleI GAGTC 4 cut(s) 316, 463, 527, 564
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
PpsI GAGTC 4 cut(s) 316, 463, 527, 564
Ppu21I YACGTR 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 334
PspCI CACGTG 1 cut(s) 463
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 4 cut(s) 59, 126, 508, 523
RsaI GTAC 3 cut(s) 39, 445, 576
RsaNI GTAC 3 cut(s) 38, 444, 575
SaqAI TTAA 5 cut(s) 152, 182, 410, 414, 582
SatI GCNGC 2 cut(s) 147, 274
Sau3AI GATC 1 cut(s) 591
Sau96I GGNCC 4 cut(s) 59, 126, 508, 523
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 4 cut(s) 317, 464, 527, 565
ScrFI CCNGG 2 cut(s) 129, 336
SetI ASST 6 cut(s) 21, 160, 249, 439, 465, 510
SfaNI GCATC 2 cut(s) 133, 285
SfiI GGCCNNNNNGGCC 1 cut(s) 279
SinI GGWCC 3 cut(s) 59, 508, 523
Sse9I AATT 3 cut(s) 378, 411, 616
SsiI CCGC 5 cut(s) 136, 146, 274, 354, 542
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 127, 334
TaaI ACNGT 2 cut(s) 52, 516
TaiI ACGT 2 cut(s) 249, 465
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 378, 411, 616
TatI WGTACW 2 cut(s) 37, 574
TauI GCSGC 2 cut(s) 149, 276
TfiI GAWTC 2 cut(s) 74, 89
Tru1I TTAA 5 cut(s) 152, 182, 410, 414, 582
Tru9I TTAA 5 cut(s) 152, 182, 410, 414, 582
TseFI GTSAC 4 cut(s) 19, 170, 236, 338
Tsp45I GTSAC 4 cut(s) 19, 170, 236, 338
TspDTI ATGAA 3 cut(s) 508, 581, 589
VpaK11BI GGWCC 3 cut(s) 59, 508, 523
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.