RchiOBHm_Chr6g0294581

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
56836275 .. 56840973
4699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26439

Sequence Viewer

Length: 378 bp
ATGGCCATAATGCGGTTCACAAAGATGGATTTGTTTTCGCTGCCAAGGAAGTTTCATTGCTTGATCCAGGAAGTCCGGGGAGGAGCTGTCTTTCTCAACTTCAACAGGGATATCAAATGTGCAAATATTTTAGTGGATGCTTATGGATCTGCGAAGCTTGCAGATTTTGGATTGGCAAAGATCATCACTAAAATGAATGAAATTCAATCTTTGCAGGGGACTGCATTCTGGATGGCCCCTGAGGTTTTTAGTGCAAAAATGAAGAACCAAGGTTATGGGCCTCCCAGCAGATATATGGAGCCTTGGTTGCACTGTGTTGGAGATGTTAACAAGGCAGGTTCCCTACCCTGGTTTGGAACCGTTTCAGGCATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.0

Weight (kDa)

9.3

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 36 - 92 5.3e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 86 3.6e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 58, 154
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 12, 348, 353
AgsI TTSAA 2 cut(s) 103, 206
AjnI CCWGG 2 cut(s) 66, 347
AluBI AGCT 2 cut(s) 86, 157
AluI AGCT 2 cut(s) 86, 157
AlwI GGATC 2 cut(s) 58, 154
AoxI GGCC 3 cut(s) 3, 234, 278
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 235, 278
AsuC2I CCSGG 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 19, 226
BciT130I CCWGG 2 cut(s) 68, 349
BcnI CCSGG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 326
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 68, 77, 349
BmgT120I GGNCC 2 cut(s) 235, 278
BmiI GGNNCC 4 cut(s) 237, 300, 340, 358
BmrFI CCNGG 3 cut(s) 68, 77, 349
BmsI GCATC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 44, 76, 268, 302, 347
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 290, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 348, 353
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 68, 349
BseDI CCNNGG 5 cut(s) 44, 76, 268, 302, 347
BseGI GGATG 2 cut(s) 142, 237
BseLI CCNNNNNNNGG 3 cut(s) 12, 348, 353
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 3 cut(s) 5, 236, 280
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 12, 348, 353
BsmFI GGGAC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 3 cut(s) 5, 236, 280
Bsp143I GATC 3 cut(s) 63, 146, 180
BspACI CCGC 1 cut(s) 13
BspANI GGCC 3 cut(s) 5, 236, 280
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 4 cut(s) 237, 300, 340, 358
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 58, 154
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 5 cut(s) 44, 76, 268, 302, 347
BssMI GATC 3 cut(s) 63, 146, 180
BssT1I CCWWGG 3 cut(s) 44, 268, 302
Bst2UI CCWGG 2 cut(s) 68, 349
Bst4CI ACNGT 2 cut(s) 314, 361
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 142, 237
BstKTI GATC 3 cut(s) 66, 149, 183
BstMBI GATC 3 cut(s) 63, 146, 180
BstMWI GCNNNNNNNGC 2 cut(s) 158, 307
BstNI CCWGG 2 cut(s) 68, 349
BstSCI CCNGG 3 cut(s) 66, 75, 347
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 3 cut(s) 5, 236, 280
BtsCI GGATG 2 cut(s) 142, 237
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 235, 278
CviJI RGCY 6 cut(s) 5, 86, 157, 236, 280, 301
CviKI_1 RGCY 6 cut(s) 5, 86, 157, 236, 280, 301
DdeI CTNAG 1 cut(s) 240
DpnI GATC 3 cut(s) 65, 148, 182
DpnII GATC 3 cut(s) 63, 146, 180
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 44, 268, 302
Eco32I GATATC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 66, 347
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 3 cut(s) 44, 268, 302
ErhI CCWWGG 3 cut(s) 44, 268, 302
FaiI YATR 5 cut(s) 8, 144, 276, 294, 296
FaqI GGGAC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 149, 244
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 3 cut(s) 5, 236, 280
HapII CCGG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 155
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 18, 328
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 18, 328
HpyCH4III ACNGT 2 cut(s) 314, 361
HpyCH4V TGCA 6 cut(s) 122, 161, 214, 224, 254, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 307
HpyF3I CTNAG 1 cut(s) 240
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 63, 146, 180
LmnI GCTCC 2 cut(s) 83, 298
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 127
MalI GATC 3 cut(s) 65, 148, 182
MboI GATC 3 cut(s) 63, 146, 180
MboII GAAGA 1 cut(s) 274
MflI RGATCY 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 3 cut(s) 74, 235, 291
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 361
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 327, 376
MslI CAYNNNNRTG 2 cut(s) 23, 191
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 3 cut(s) 68, 77, 349
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 2 cut(s) 68, 349
MwoI GCNNNNNNNGC 2 cut(s) 158, 307
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 63, 146, 180
NlaIV GGNNCC 4 cut(s) 237, 300, 340, 358
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 66, 347
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 2 cut(s) 66, 347
PspN4I GGNNCC 4 cut(s) 237, 300, 340, 358
PspPI GGNCC 2 cut(s) 235, 278
PsuI RGATCY 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 23, 191
SaqAI TTAA 2 cut(s) 327, 376
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 63, 146, 180
Sau96I GGNCC 2 cut(s) 235, 278
ScrFI CCNGG 3 cut(s) 68, 77, 349
SetI ASST 5 cut(s) 88, 159, 246, 274, 340
SfaNI GCATC 1 cut(s) 127
SmiMI CAYNNNNRTG 2 cut(s) 23, 191
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 13
SspI AATATT 1 cut(s) 127
StyD4I CCNGG 3 cut(s) 66, 75, 347
StyI CCWWGG 3 cut(s) 44, 268, 302
TaaI ACNGT 2 cut(s) 314, 361
TasI AATT 1 cut(s) 201
Tru1I TTAA 2 cut(s) 327, 376
Tru9I TTAA 2 cut(s) 327, 376
TscAI CASTG 1 cut(s) 317
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 44, 209, 213, 275
TspRI CASTG 1 cut(s) 317
XapI RAATTY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.