Rh5AG518100

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
88162035 .. 88166242
4208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG518100.1

Sequence Viewer

Length: 744 bp
ATGAAGAGAGGGAAATGGTGCAGAGAAGGTTTGGTTCCTTTTCCTCATCTTCTTCTGATGAAGAAGAAGTTGAATAGAAGGTTTTCCAGCACTACCGCAGAGATTTCCCGTACCGCAGAGATTTCCAGTATTTCTCCAAATGGAAGGTTTTCGCCGAATGGGAAGCCTAAGATTACTGTCACTAATTGGGAAAAGGGTGATTTGCTCGGCAGCGGCTCTTTTGGGTCTGTGTATGAAGGAATTTCTGATGGCGGATGCTTCATTGCTATCAAGGAAGTTTCCTTGCTTGATCAAGGAAGCCTGGGGAGGCAAAGAGTTTTTCAACTTGAACAGGAGATTGCTCTTCTGAGTCAGTTTGAACATGAGAACATAGTTCAGTATTATGGCACACAAAAGGATGGATCAAAGCTCTATATCTTTCTGGAACTTGTAGCCAAAGGCTCCCTTCAAAGGCTATATCAAACGTACCATCTTACAGATTTTCATGTCTCCGTATACACTAGACAGATCTTGCAAGGTCTGAAGTATCTTCACGACCGCAAAGTGATTCACAGGGACATTAAATGCGCAAATCTTTTGGTGCATGCTAATGGATCTGTGAAGCTTTCTGACTTTGGATTGGCAAAGACTATCAAAATGAACGACATAAAATCTTGCCAAGGAACTGCATACTGGATGGCCCCTGAGGTTGTTAATCGTAAGAGTCAAGGTTATGGCCTTCCAGCTGATATATGGAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

247

Amino Acids

27.86

Weight (kDa)

9.48

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 64 - 247 5e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 66 - 246 7.8e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 568
AccI GTMKAC 1 cut(s) 495
AciI CCGC 5 cut(s) 96, 114, 213, 252, 538
AclWI GGATC 2 cut(s) 409, 601
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 2 cut(s) 112, 467
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 5 cut(s) 73, 323, 329, 359, 449
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 409, 604, 725
AluI AGCT 3 cut(s) 409, 604, 725
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 2 cut(s) 409, 601
AoxI GGCC 2 cut(s) 678, 715
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 2 cut(s) 82, 148
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 679
AsuHPI GGTGA 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 684
BbvI GCAGC 1 cut(s) 222
BccI CCATC 4 cut(s) 242, 392, 477, 670
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 507
BisI GCNGC 2 cut(s) 211, 214
BlsI GCNGC 2 cut(s) 212, 215
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 3 cut(s) 36, 442, 681
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 301, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 2 cut(s) 126, 677
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 301, 658
BseGI GGATG 3 cut(s) 260, 403, 681
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 338, 675
BseNI ACTGG 2 cut(s) 126, 677
BseXI GCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 538
BshFI GGCC 2 cut(s) 680, 717
BsiEI CGRYCG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 2 cut(s) 680, 717
Bsp143I GATC 4 cut(s) 289, 401, 507, 593
BspACI CCGC 5 cut(s) 96, 114, 213, 252, 538
BspANI GGCC 2 cut(s) 680, 717
BspCNI CTCAG 2 cut(s) 339, 676
BspLI GGNNCC 3 cut(s) 36, 442, 681
BspPI GGATC 2 cut(s) 409, 601
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 126, 677
BssECI CCNNGG 2 cut(s) 301, 658
BssMI GATC 4 cut(s) 289, 401, 507, 593
BssNAI GTATAC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 3 cut(s) 168, 347, 684
BstF5I GGATG 3 cut(s) 260, 403, 681
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 4 cut(s) 292, 404, 510, 596
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 289, 401, 507, 593
BstMCI CGRYCG 1 cut(s) 538
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 507, 593
BstYI RGATCY 2 cut(s) 507, 593
BstZ17I GTATAC 1 cut(s) 496
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 2 cut(s) 680, 717
BtsCI GGATG 3 cut(s) 260, 403, 681
Cac8I GCNNGC 1 cut(s) 585
CfoI GCGC 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 679
Csp6I GTAC 2 cut(s) 111, 466
CviAII CATG 3 cut(s) 362, 485, 584
CviQI GTAC 2 cut(s) 111, 466
DdeI CTNAG 3 cut(s) 168, 347, 684
DpnI GATC 4 cut(s) 291, 403, 509, 595
DpnII GATC 4 cut(s) 289, 401, 507, 593
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 542
Eco81I CCTNAGG 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 3 cut(s) 365, 488, 587
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 569
FatI CATG 3 cut(s) 361, 484, 583
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 211, 214
FokI GGATG 3 cut(s) 267, 410, 688
Fsp4HI GCNGC 2 cut(s) 211, 214
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 568
GlaI GCGC 1 cut(s) 568
GluI GCNGC 2 cut(s) 211, 214
HaeIII GGCC 2 cut(s) 680, 717
HhaI GCGC 1 cut(s) 569
Hin1II CATG 3 cut(s) 365, 488, 587
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 4 cut(s) 349, 547, 703, 736
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 5 cut(s) 57, 247, 348, 522, 610
Hpy188III TCNNGA 2 cut(s) 422, 533
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 6 cut(s) 20, 72, 138, 230, 455, 728
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 21, 514, 583, 668
HpyF3I CTNAG 3 cut(s) 168, 347, 684
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 3 cut(s) 365, 488, 587
HspAI GCGC 1 cut(s) 567
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 289, 401, 507, 593
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 178
MalI GATC 4 cut(s) 291, 403, 509, 595
MboI GATC 4 cut(s) 289, 401, 507, 593
MboII GAAGA 7 cut(s) 16, 41, 44, 73, 76, 335, 521
MflI RGATCY 2 cut(s) 507, 593
MluCI AATT 2 cut(s) 184, 240
MlyI GAGTC 2 cut(s) 358, 712
MnlI CCTC 3 cut(s) 54, 300, 679
MroXI GAANNNNTTC 2 cut(s) 82, 148
MseI TTAA 2 cut(s) 561, 693
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 2 cut(s) 213, 725
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 4 cut(s) 289, 401, 507, 593
NlaIII CATG 3 cut(s) 365, 488, 587
NlaIV GGNNCC 3 cut(s) 36, 442, 681
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 178
NsbI TGCGCA 1 cut(s) 568
NspI RCATGY 1 cut(s) 587
PaeI GCATGC 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 348
PdmI GAANNNNTTC 2 cut(s) 82, 148
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 2 cut(s) 212, 215
PleI GAGTC 2 cut(s) 357, 711
PpsI GAGTC 2 cut(s) 357, 711
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 36, 442, 681
PspPI GGNCC 1 cut(s) 679
PsuI RGATCY 2 cut(s) 507, 593
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 2 cut(s) 112, 467
RsaNI GTAC 2 cut(s) 111, 466
RseI CAYNNNNRTG 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 561, 693
SatI GCNGC 2 cut(s) 211, 214
Sau3AI GATC 4 cut(s) 289, 401, 507, 593
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 2 cut(s) 358, 712
ScrFI CCNGG 1 cut(s) 302
SfaNI GCATC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 588
SphI GCATGC 1 cut(s) 587
Sse9I AATT 2 cut(s) 184, 240
SsiI CCGC 5 cut(s) 96, 114, 213, 252, 538
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 467
TasI AATT 2 cut(s) 184, 240
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 2 cut(s) 561, 693
Tru9I TTAA 2 cut(s) 561, 693
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 6 cut(s) 17, 74, 249, 250, 473, 653
TspGWI ACGGA 1 cut(s) 481
XapI RAATTY 1 cut(s) 240
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 2 cut(s) 82, 148
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.