Rw5G048120

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000243
Physical Location & Seq
Reverse (-)
83509013 .. 83516212
7200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048120.1

Sequence Viewer

Length: 1500 bp
ATGTTATTCTTTTCCAAGTTAATTGCCAAACAAAAAGTAGACGTCTCAGAATTTTCTCGTTCATTAGCTCTTAAGACGTTTCTTGAGGGGTTTCAGGGGTATTACGTGTATTTGAGTTTCAGGGGTGCTGACACTCGAAGCGGTTTTACATCTCAACTATACGATGGGCTGCAGAGGAGGGGAGTTAAAACATTCATGGATAGTCCAGATCTTCACGTAGGGGATGATGTTTCTCCCACTCTTCTAAAGGCAATTGAAGGATCAAGGTTGGCAATTGTTGTTCTGTCCCAAAAGTATGCTCATTCTGCTTGGTGTTTGGATGAACTTACAAAGATTTTTCAGTTCATCGAGGATGGTCGTAGAATTCTTCCAGTTTTTTATAAGGTCAACCCTAGTGATGTAAGAAATCAAAAGGGGAGTTTTCAAGATGCTTTCGCCAAGCATGCAAGCTCTGGGCGATACAAATGGGAGAAGGTGATGCAGTGGACAGCTGCTTTAACAAAAGTGGCCAATTTGTCAGGGTGGGATACGCGGGATTACGACACCGACAAAGATCTTGTCGAAGACATTGTGGAAAATGTGTACAGTAAACTACAATCTGTGGTGGTATCCCAGAGCCCTGACTTGACAGAAATTCAAGGCACATTGGCGGGGCCGAGCGGGTGTTGTTCTGGGAATCCTAAGCTTACTGTCACTAATTGGAAAAAGGGTGCTCTTCTCGGCAGCGGCTCTTTCGGGTCTGTGTATGAAGGAATTACTGATGGCGGATGCTTCATTGCTGTCAAGGAAGTTTCCTTGCTTGAGCAAGGAAGAGTTTCTCGACTTGAACAGGAGATTGCTCTTCTGAGTCAGTTTGAACATGAGAACATAGTTCAGTATTATGGCACACAAAAGGATGAATCAAAGCTCTATATCTTTCTGGAACTTGTAACCAAAGGGTCCCTTCGAAAGCTATATCAAACGTACCCTCTTACAGATTCACATGTCTCTGTATACACTAGACAGATCTTGCATGGTCTGAAATATCTTCACGACCAAAATGTGATTCACAGGGACATTAAATGCGCAAATATTTTGGTGCATGCTAATGGATCTGTGAAGCTTGCAGACTTTGGATTGGCAAAGGCTATCAAAATGAACGACAAAATATCTCGCCAAGGAACTGCAAACTGGATGGCCCCTGAGGTTGTTCACCCTAAAAATCCAGGTTATGGCCTTCCAGCTGATATATGGAGTCTTGGATGTACTGTGTTGGAGATGTTAACTAGGGAGGTTCCATACCCTAATCTCGAATGGATGGCGGCAGCATGTAAAATTATGATGGGGGAGCTCCCTCTGGTTCCTGATTCTCTTTCAAGAGAGGCACAAGATTTTATCCATCGGTGCTTACAAGTTAAGCCAGATAATCGTCCCACTGCTGCTCAGCTTTTAGAACATCCGTTTGTTCCTCCCACGTCTTCTGAATCAGTATCTCCTTACAATCACCACAGGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
Pkinase

Protein Analysis

499

Amino Acids

55.93

Weight (kDa)

7.21

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 34 - 205 5.6e-48 TIR domain
TIR_2 PF13676 36 - 131 3.1e-16 TIR domain
Pkinase PF00069 235 - 482 5.2e-69 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 238 - 478 3.4e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AatII GACGTC 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 1066
AccB7I CCANNNNNTGG 1 cut(s) 1211
AccBSI CCGCTC 1 cut(s) 660
AccI GTMKAC 2 cut(s) 39, 993
AccII CGCG 1 cut(s) 532
AciI CCGC 7 cut(s) 141, 532, 650, 660, 726, 765, 1301
AclWI GGATC 2 cut(s) 268, 1099
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 3 cut(s) 50, 363, 633
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 584, 965, 1246
AfiI CCNNNNNNNGG 1 cut(s) 1211
AflII CTTAAG 1 cut(s) 71
AflIII ACRYGT 2 cut(s) 105, 982
AgsI TTSAA 6 cut(s) 257, 425, 638, 827, 857, 1356
AjiI CACGTC 1 cut(s) 1455
AjnI CCWGG 1 cut(s) 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
Alw21I GWGCWC 2 cut(s) 715, 1332
Alw26I GTCTC 2 cut(s) 49, 991
AlwI GGATC 2 cut(s) 268, 1099
AoxI GGCC 4 cut(s) 507, 653, 1176, 1213
ApeKI GCWGC 5 cut(s) 169, 491, 723, 1304, 1418
ApoI RAATTY 3 cut(s) 50, 363, 633
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
Asp700I GAANNNNTTC 1 cut(s) 814
AspLEI GCGC 1 cut(s) 1067
AspS9I GGNCC 3 cut(s) 653, 939, 1177
AsuHPI GGTGA 3 cut(s) 487, 1184, 1475
AsuII TTCGAA 1 cut(s) 946
AvaII GGWCC 1 cut(s) 939
AxyI CCTNAGG 1 cut(s) 1182
BalI TGGCCA 1 cut(s) 509
BanII GRGCYC 2 cut(s) 620, 1332
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
BbsI GAAGAC 2 cut(s) 570, 1449
Bbv12I GWGCWC 2 cut(s) 715, 1332
BbvI GCAGC 5 cut(s) 156, 478, 735, 1316, 1405
BccI CCATC 7 cut(s) 158, 347, 755, 1168, 1291, 1315, 1386
BciT130I CCWGG 1 cut(s) 1206
BciVI GTATCC 2 cut(s) 520, 619
BcoDI GTCTC 2 cut(s) 49, 991
BfaI CTAG 3 cut(s) 393, 999, 1266
BfmI CTRYAG 1 cut(s) 170
BfrI CTTAAG 1 cut(s) 71
BfuI GTATCC 2 cut(s) 520, 619
BglII AGATCT 3 cut(s) 208, 553, 1005
BisI GCNGC 7 cut(s) 170, 492, 724, 727, 1302, 1305, 1419
BlpI GCTNAGC 1 cut(s) 1422
BlsI GCNGC 7 cut(s) 171, 493, 725, 728, 1303, 1306, 1420
Bme1390I CCNGG 1 cut(s) 1206
Bme18I GGWCC 1 cut(s) 939
BmgBI CACGTC 1 cut(s) 1455
BmgT120I GGNCC 3 cut(s) 653, 939, 1177
BmiI GGNNCC 6 cut(s) 654, 940, 941, 1179, 1275, 1341
BmrFI CCNGG 1 cut(s) 1206
BmsI GCATC 3 cut(s) 418, 468, 758
BpiI GAAGAC 2 cut(s) 570, 1449
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 1 cut(s) 1422
Bpu14I TTCGAA 1 cut(s) 946
BpuEI CTTGAG 2 cut(s) 104, 821
BsaAI YACGTR 2 cut(s) 106, 217
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 1156
Bsc4I CCNNNNNNNGG 1 cut(s) 1211
Bse1I ACTGG 2 cut(s) 371, 1175
Bse21I CCTNAGG 1 cut(s) 1182
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 1 cut(s) 1206
BseDI CCNNGG 1 cut(s) 1156
BseGI GGATG 9 cut(s) 229, 325, 358, 773, 901, 1179, 1247, 1302, 1435
BseLI CCNNNNNNNGG 1 cut(s) 1211
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 4 cut(s) 60, 836, 1173, 1436
BseNI ACTGG 2 cut(s) 371, 1175
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 5 cut(s) 156, 478, 735, 1316, 1405
Bsh1236I CGCG 1 cut(s) 532
BshFI GGCC 4 cut(s) 509, 655, 1178, 1215
BsiHKAI GWGCWC 2 cut(s) 715, 1332
BslFI GGGAC 4 cut(s) 271, 925, 1067, 1395
BslI CCNNNNNNNGG 1 cut(s) 1211
BsmAI GTCTC 2 cut(s) 49, 991
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 4 cut(s) 271, 925, 1067, 1395
BsnI GGCC 4 cut(s) 509, 655, 1178, 1215
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 3 cut(s) 620, 715, 1332
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 5 cut(s) 208, 260, 553, 1005, 1091
Bsp1720I GCTNAGC 1 cut(s) 1422
BspACI CCGC 7 cut(s) 141, 532, 650, 660, 726, 765, 1301
BspANI GGCC 4 cut(s) 509, 655, 1178, 1215
BspCNI CTCAG 4 cut(s) 59, 837, 1174, 1435
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 6 cut(s) 654, 940, 941, 1179, 1275, 1341
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 2 cut(s) 268, 1099
BspQI GCTCTTC 2 cut(s) 720, 846
BspT104I TTCGAA 1 cut(s) 946
BspTI CTTAAG 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 2 cut(s) 371, 1175
BssECI CCNNGG 1 cut(s) 1156
BssMI GATC 5 cut(s) 208, 260, 553, 1005, 1091
BssNAI GTATAC 1 cut(s) 994
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 1156
Bst1107I GTATAC 1 cut(s) 994
Bst2UI CCWGG 1 cut(s) 1206
Bst4CI ACNGT 3 cut(s) 587, 691, 1249
Bst6I CTCTTC 4 cut(s) 246, 720, 805, 846
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 582
BstBAI YACGTR 2 cut(s) 106, 217
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 4 cut(s) 444, 448, 1083, 1104
BstDEI CTNAG 5 cut(s) 46, 681, 845, 1182, 1422
BstF5I GGATG 9 cut(s) 229, 325, 358, 773, 901, 1179, 1247, 1302, 1435
BstFNI CGCG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 1067
BstKTI GATC 5 cut(s) 211, 263, 556, 1008, 1094
BstMAI GTCTC 2 cut(s) 49, 991
BstMBI GATC 5 cut(s) 208, 260, 553, 1005, 1091
BstMWI GCNNNNNNNGC 2 cut(s) 305, 443
BstNI CCWGG 1 cut(s) 1206
BstNSI RCATGY 4 cut(s) 446, 986, 1085, 1311
BstSCI CCNGG 1 cut(s) 1204
BstSFI CTRYAG 1 cut(s) 170
BstUI CGCG 1 cut(s) 532
BstV1I GCAGC 5 cut(s) 156, 478, 735, 1316, 1405
BstV2I GAAGAC 2 cut(s) 570, 1449
BstX2I RGATCY 4 cut(s) 208, 553, 1005, 1091
BstYI RGATCY 4 cut(s) 208, 553, 1005, 1091
BstZ17I GTATAC 1 cut(s) 994
Bsu36I CCTNAGG 1 cut(s) 1182
BsuI GTATCC 2 cut(s) 520, 619
BsuRI GGCC 4 cut(s) 509, 655, 1178, 1215
BtrI CACGTC 1 cut(s) 1455
BtsCI GGATG 9 cut(s) 229, 325, 358, 773, 901, 1179, 1247, 1302, 1435
BtsI GCAGTG 2 cut(s) 488, 1413
BtsIMutI CAGTG 2 cut(s) 488, 1413
Cac8I GCNNGC 4 cut(s) 444, 448, 1083, 1104
CfoI GCGC 1 cut(s) 1067
Cfr13I GGNCC 3 cut(s) 653, 939, 1177
Csp6I GTAC 3 cut(s) 583, 964, 1245
CviAII CATG 7 cut(s) 196, 443, 860, 983, 1013, 1082, 1308
CviQI GTAC 3 cut(s) 583, 964, 1245
DdeI CTNAG 5 cut(s) 46, 681, 845, 1182, 1422
DpnI GATC 5 cut(s) 210, 262, 555, 1007, 1093
DpnII GATC 5 cut(s) 208, 260, 553, 1005, 1091
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 246, 720, 805, 846
EarI CTCTTC 4 cut(s) 246, 720, 805, 846
EciI GGCGGA 1 cut(s) 780
Ecl136II GAGCTC 1 cut(s) 1330
Eco130I CCWWGG 1 cut(s) 1156
Eco24I GRGCYC 2 cut(s) 620, 1332
Eco47I GGWCC 1 cut(s) 939
Eco53kI GAGCTC 1 cut(s) 1330
Eco81I CCTNAGG 1 cut(s) 1182
EcoICRI GAGCTC 1 cut(s) 1330
EcoO109I RGGNCCY 1 cut(s) 939
EcoRI GAATTC 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 1204
EcoT14I CCWWGG 1 cut(s) 1156
EcoT38I GRGCYC 2 cut(s) 620, 1332
ErhI CCWWGG 1 cut(s) 1156
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 7 cut(s) 199, 446, 863, 986, 1016, 1085, 1311
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 4 cut(s) 271, 925, 1067, 1395
FatI CATG 7 cut(s) 195, 442, 859, 982, 1012, 1081, 1307
FauI CCCGC 3 cut(s) 525, 643, 653
FblI GTMKAC 2 cut(s) 39, 993
Fnu4HI GCNGC 7 cut(s) 170, 492, 724, 727, 1302, 1305, 1419
FokI GGATG 9 cut(s) 236, 332, 365, 780, 908, 1186, 1254, 1309, 1422
FriOI GRGCYC 2 cut(s) 620, 1332
Fsp4HI GCNGC 7 cut(s) 170, 492, 724, 727, 1302, 1305, 1419
FspBI CTAG 3 cut(s) 393, 999, 1266
FspI TGCGCA 1 cut(s) 1066
GlaI GCGC 1 cut(s) 1066
GluI GCNGC 7 cut(s) 170, 492, 724, 727, 1302, 1305, 1419
HaeIII GGCC 4 cut(s) 509, 655, 1178, 1215
HhaI GCGC 1 cut(s) 1067
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 7 cut(s) 199, 446, 863, 986, 1016, 1085, 1311
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 2 cut(s) 388, 1263
HindII GTYRAC 2 cut(s) 388, 1263
HindIII AAGCTT 2 cut(s) 683, 1100
HinfI GANTC 8 cut(s) 676, 847, 899, 977, 1045, 1234, 1346, 1463
HpaI GTTAAC 1 cut(s) 1263
HphI GGTGA 3 cut(s) 487, 1184, 1475
Hpy166II GTNNAC 8 cut(s) 40, 388, 486, 583, 590, 994, 1192, 1263
Hpy188I TCNGA 4 cut(s) 49, 846, 1020, 1462
Hpy188III TCNNGA 9 cut(s) 83, 206, 425, 819, 920, 1031, 1289, 1343, 1356
Hpy8I GTNNAC 8 cut(s) 40, 388, 486, 583, 590, 994, 1192, 1263
HpyAV CCTTC 5 cut(s) 251, 466, 743, 953, 1226
HpyCH4III ACNGT 3 cut(s) 587, 691, 1249
HpyCH4IV ACGT 6 cut(s) 42, 77, 105, 216, 962, 1454
HpyCH4V TGCA 7 cut(s) 172, 446, 481, 1012, 1081, 1106, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 443
HpyF3I CTNAG 5 cut(s) 46, 681, 845, 1182, 1422
HpySE526I ACGT 6 cut(s) 42, 77, 105, 216, 962, 1454
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 7 cut(s) 199, 446, 863, 986, 1016, 1085, 1311
HspAI GCGC 1 cut(s) 1065
KflI GGGWCCC 1 cut(s) 939
KspAI GTTAAC 1 cut(s) 1263
Kzo9I GATC 5 cut(s) 208, 260, 553, 1005, 1091
LguI GCTCTTC 2 cut(s) 720, 846
LmnI GCTCC 2 cut(s) 1327, 1335
Lsp1109I GCAGC 5 cut(s) 156, 478, 735, 1316, 1405
LweI GCATC 3 cut(s) 418, 468, 758
MaeI CTAG 3 cut(s) 393, 999, 1266
MaeII ACGT 6 cut(s) 42, 77, 105, 216, 962, 1454
MaeIII GTNAC 2 cut(s) 691, 928
MalI GATC 5 cut(s) 210, 262, 555, 1007, 1093
MbiI CCGCTC 1 cut(s) 660
MboI GATC 5 cut(s) 208, 260, 553, 1005, 1091
MboII GAAGA 9 cut(s) 203, 233, 359, 575, 707, 822, 833, 1019, 1449
MfeI CAATTG 2 cut(s) 252, 273
MflI RGATCY 4 cut(s) 208, 553, 1005, 1091
MhlI GDGCHC 3 cut(s) 620, 715, 1332
MlsI TGGCCA 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 856, 1243
MmeI TCCRAC 1 cut(s) 1233
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 814
MscI TGGCCA 1 cut(s) 509
MseI TTAA 7 cut(s) 20, 72, 186, 497, 1059, 1262, 1395
MslI CAYNNNNRTG 1 cut(s) 1086
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 3 cut(s) 491, 726, 1223
MspCI CTTAAG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 1206
MunI CAATTG 2 cut(s) 252, 273
MvaI CCWGG 1 cut(s) 1206
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 2 cut(s) 305, 443
NdeII GATC 5 cut(s) 208, 260, 553, 1005, 1091
NlaIII CATG 7 cut(s) 199, 446, 863, 986, 1016, 1085, 1311
NlaIV GGNNCC 6 cut(s) 654, 940, 941, 1179, 1275, 1341
NmeAIII GCCGAG 2 cut(s) 681, 699
NmuCI GTSAC 1 cut(s) 691
NsbI TGCGCA 1 cut(s) 1066
NspI RCATGY 4 cut(s) 446, 986, 1085, 1311
NspV TTCGAA 1 cut(s) 946
PaeI GCATGC 2 cut(s) 446, 1085
PciI ACATGT 1 cut(s) 982
PciSI GCTCTTC 2 cut(s) 720, 846
PdmI GAANNNNTTC 1 cut(s) 814
PfeI GAWTC 6 cut(s) 676, 899, 977, 1045, 1346, 1463
PflMI CCANNNNNTGG 1 cut(s) 1211
PkrI GCNGC 7 cut(s) 171, 493, 725, 728, 1303, 1306, 1420
PleI GAGTC 2 cut(s) 855, 1242
PpsI GAGTC 2 cut(s) 855, 1242
Ppu21I YACGTR 2 cut(s) 106, 217
PpuMI RGGWCCY 1 cut(s) 939
PscI ACATGT 1 cut(s) 982
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 1332
Psp5II RGGWCCY 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 1204
PspGI CCWGG 1 cut(s) 1204
PspN4I GGNNCC 6 cut(s) 654, 940, 941, 1179, 1275, 1341
PspPI GGNCC 3 cut(s) 653, 939, 1177
PspPPI RGGWCCY 1 cut(s) 939
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 4 cut(s) 208, 553, 1005, 1091
PvuII CAGCTG 2 cut(s) 491, 1223
RsaI GTAC 3 cut(s) 584, 965, 1246
RsaNI GTAC 3 cut(s) 583, 964, 1245
RseI CAYNNNNRTG 1 cut(s) 1086
SacI GAGCTC 1 cut(s) 1332
SapI GCTCTTC 2 cut(s) 720, 846
SaqAI TTAA 7 cut(s) 20, 72, 186, 497, 1059, 1262, 1395
SatI GCNGC 7 cut(s) 170, 492, 724, 727, 1302, 1305, 1419
Sau3AI GATC 5 cut(s) 208, 260, 553, 1005, 1091
Sau96I GGNCC 3 cut(s) 653, 939, 1177
SchI GAGTC 2 cut(s) 856, 1243
ScrFI CCNGG 1 cut(s) 1206
SduI GDGCHC 3 cut(s) 620, 715, 1332
SfaNI GCATC 3 cut(s) 418, 468, 758
SfcI CTRYAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 946
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 1086
SmlI CTYRAG 3 cut(s) 71, 83, 800
SmoI CTYRAG 3 cut(s) 71, 83, 800
SphI GCATGC 2 cut(s) 446, 1085
SsiI CCGC 7 cut(s) 141, 532, 650, 660, 726, 765, 1301
SspI AATATT 1 cut(s) 1072
SspMI CTAG 3 cut(s) 393, 999, 1266
SstI GAGCTC 1 cut(s) 1332
StyD4I CCNGG 1 cut(s) 1204
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 3 cut(s) 587, 691, 1249
TaiI ACGT 6 cut(s) 45, 80, 108, 219, 965, 1457
TaqI TCGA 6 cut(s) 136, 348, 561, 820, 946, 1290
TatI WGTACW 2 cut(s) 582, 1244
TauI GCSGC 2 cut(s) 729, 1304
TfiI GAWTC 6 cut(s) 676, 899, 977, 1045, 1346, 1463
Tru1I TTAA 7 cut(s) 20, 72, 186, 497, 1059, 1262, 1395
Tru9I TTAA 7 cut(s) 20, 72, 186, 497, 1059, 1262, 1395
TscAI CASTG 2 cut(s) 488, 1420
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 5 cut(s) 169, 491, 723, 1304, 1418
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 8 cut(s) 51, 184, 334, 336, 762, 763, 912, 1151
TspGWI ACGGA 1 cut(s) 1428
TspRI CASTG 2 cut(s) 488, 1420
Van91I CCANNNNNTGG 1 cut(s) 1211
Vha464I CTTAAG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 939
XapI RAATTY 3 cut(s) 50, 363, 633
XceI RCATGY 4 cut(s) 446, 986, 1085, 1311
XcmI CCANNNNNNNNNTGG 1 cut(s) 1227
XmiI GTMKAC 2 cut(s) 39, 993
XmnI GAANNNNTTC 1 cut(s) 814
XspI CTAG 3 cut(s) 393, 999, 1266
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.