Rmu_sc0001324.1_g000001

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001324.1
OG0000243
Physical Location & Seq
Reverse (-)
2 .. 537
536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001324.1_g000001.1.cds

Sequence Viewer

Length: 536 bp
atggatcaaaagaaggcccggcggttgcagcgccgcaatgcggtcaagcacattgactacgacgcttcttcgtcctcctcctcccgcgacaactccacccacgcgcagcagctccacacgcgctcgctcgacctgtcggaccggaccagcttccgggtcgaaggaaatgacggtgagttcgaaaagatttgcgccgagctgggcttctccggcccagacgacttcgcaatacccgaggcggcctgggagtcccggaagatccggtccacgaactcggatgttctccccctgtcaaaactgtacgagatggatagtccgacacccgacccgaaggacgaatcggagcgtgaggatgatgccgtggcggaattgagcaatagagttagggatagcgttactgttacggtagccgagtcgactcggaccgagtccgagtcggcggggccgagcgggtattgtactgcgagtagtgatagttgtagtgttagtgtcggaattaagggagcgcggccgccggtgctgaagccaccgccgtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
Pkinase

Protein Analysis

179

Amino Acids

19.55

Weight (kDa)

5.06

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 450
AccI GTMKAC 1 cut(s) 416
AccII CGCG 4 cut(s) 87, 104, 121, 508
AclWI GGATC 2 cut(s) 12, 253
AcoI YGGCCR 1 cut(s) 509
AfaI GTAC 2 cut(s) 302, 460
AfiI CCNNNNNNNGG 2 cut(s) 40, 153
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 3 cut(s) 112, 150, 199
AluI AGCT 3 cut(s) 112, 150, 199
AlwI GGATC 2 cut(s) 12, 253
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 5 cut(s) 15, 211, 240, 443, 509
ApeKI GCWGC 3 cut(s) 28, 106, 109
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 5 cut(s) 33, 106, 123, 194, 508
AspS9I GGNCC 7 cut(s) 16, 139, 144, 212, 264, 423, 443
AsuC2I CCSGG 3 cut(s) 19, 155, 253
AsuHPI GGTGA 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 4 cut(s) 139, 144, 264, 423
BbvI GCAGC 3 cut(s) 40, 118, 121
BccI CCATC 1 cut(s) 301
BceAI ACGGC 2 cut(s) 344, 517
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 3 cut(s) 19, 155, 253
BfoI RGCGCY 1 cut(s) 34
BisI GCNGC 7 cut(s) 29, 34, 107, 110, 240, 509, 512
BlsI GCNGC 7 cut(s) 30, 35, 108, 111, 241, 510, 513
Bme1390I CCNGG 4 cut(s) 19, 155, 244, 253
Bme18I GGWCC 4 cut(s) 139, 144, 264, 423
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 7 cut(s) 16, 139, 144, 212, 264, 423, 443
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 4 cut(s) 19, 155, 244, 253
BmsI GCATC 1 cut(s) 346
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 3 cut(s) 19, 155, 253
BsaJI CCNNGG 3 cut(s) 234, 243, 360
BsaWI WCCGGW 2 cut(s) 141, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 153
Bse118I RCCGGY 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 3 cut(s) 234, 243, 360
BseGI GGATG 2 cut(s) 283, 358
BseLI CCNNNNNNNGG 2 cut(s) 40, 153
BseMI GCAATG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 67, 70
BseX3I CGGCCG 1 cut(s) 509
BseXI GCAGC 3 cut(s) 40, 118, 121
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 4 cut(s) 87, 104, 121, 508
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 5 cut(s) 17, 213, 242, 445, 511
BsiEI CGRYCG 1 cut(s) 512
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 7 cut(s) 19, 142, 154, 210, 253, 262, 515
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 40, 153
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 5 cut(s) 17, 213, 242, 445, 511
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 4, 258
BspANI GGCC 5 cut(s) 17, 213, 242, 445, 511
BspFNI CGCG 4 cut(s) 87, 104, 121, 508
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 2 cut(s) 12, 253
BspT104I TTCGAA 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 3 cut(s) 234, 243, 360
BssMI GATC 2 cut(s) 4, 258
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 4 cut(s) 173, 300, 400, 406
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 283, 358
BstFNI CGCG 4 cut(s) 87, 104, 121, 508
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 5 cut(s) 33, 106, 123, 194, 508
BstKTI GATC 2 cut(s) 7, 261
BstMBI GATC 2 cut(s) 4, 258
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 4 cut(s) 28, 118, 210, 517
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 17, 153, 242, 251
BstUI CGCG 4 cut(s) 87, 104, 121, 508
BstV1I GCAGC 3 cut(s) 40, 118, 121
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 509
BsuRI GGCC 5 cut(s) 17, 213, 242, 445, 511
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 283, 358
Cac8I GCNNGC 1 cut(s) 125
CciNI GCGGCCGC 1 cut(s) 509
CfoI GCGC 5 cut(s) 33, 106, 123, 194, 508
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 7 cut(s) 16, 139, 144, 212, 264, 423, 443
CpoI CGGWCCG 2 cut(s) 139, 423
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 301, 459
CspI CGGWCCG 2 cut(s) 139, 423
CviQI GTAC 2 cut(s) 301, 459
DpnI GATC 2 cut(s) 6, 260
DpnII GATC 2 cut(s) 4, 258
EaeI YGGCCR 1 cut(s) 509
EagI CGGCCG 1 cut(s) 509
EciI GGCGGA 1 cut(s) 380
EclXI CGGCCG 1 cut(s) 509
Eco47I GGWCC 4 cut(s) 139, 144, 264, 423
Eco52I CGGCCG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 242
FaqI GGGAC 1 cut(s) 235
FauI CCCGC 3 cut(s) 92, 433, 443
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 7 cut(s) 29, 34, 107, 110, 240, 509, 512
FokI GGATG 2 cut(s) 290, 365
Fsp4HI GCNGC 7 cut(s) 29, 34, 107, 110, 240, 509, 512
GlaI GCGC 5 cut(s) 32, 105, 122, 193, 507
GluI GCNGC 7 cut(s) 29, 34, 107, 110, 240, 509, 512
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 5 cut(s) 17, 213, 242, 445, 511
HapII CCGG 7 cut(s) 19, 142, 154, 210, 253, 262, 515
HgaI GACGC 1 cut(s) 71
HhaI GCGC 5 cut(s) 33, 106, 123, 194, 508
Hin6I GCGC 5 cut(s) 31, 104, 121, 192, 506
HinP1I GCGC 5 cut(s) 31, 104, 121, 192, 506
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 6 cut(s) 248, 338, 413, 418, 428, 434
HpaII CCGG 7 cut(s) 19, 142, 154, 210, 253, 262, 515
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 267, 417
Hpy188I TCNGA 7 cut(s) 139, 277, 318, 343, 423, 433, 494
Hpy8I GTNNAC 2 cut(s) 267, 417
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 7, 155, 325
HpyCH4III ACNGT 4 cut(s) 173, 300, 400, 406
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 118, 210, 517
HspAI GCGC 5 cut(s) 31, 104, 121, 192, 506
Kzo9I GATC 2 cut(s) 4, 258
LmnI GCTCC 3 cut(s) 117, 343, 503
Lsp1109I GCAGC 3 cut(s) 40, 118, 121
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 2 cut(s) 394, 400
MalI GATC 2 cut(s) 6, 260
MbiI CCGCTC 1 cut(s) 450
MboI GATC 2 cut(s) 4, 258
MboII GAAGA 2 cut(s) 60, 268
MflI RGATCY 1 cut(s) 258
MluCI AATT 2 cut(s) 368, 495
MlyI GAGTC 5 cut(s) 257, 412, 422, 437, 443
MmeI TCCRAC 3 cut(s) 117, 341, 472
MnlI CCTC 5 cut(s) 85, 88, 91, 229, 343
MseI TTAA 1 cut(s) 498
MspI CCGG 7 cut(s) 19, 142, 154, 210, 253, 262, 515
MspR9I CCNGG 4 cut(s) 19, 155, 244, 253
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 4 cut(s) 87, 104, 121, 508
MwoI GCNNNNNNNGC 4 cut(s) 28, 118, 210, 517
NciI CCSGG 3 cut(s) 19, 155, 253
NdeII GATC 2 cut(s) 4, 258
NlaIV GGNNCC 1 cut(s) 444
NmeAIII GCCGAG 3 cut(s) 220, 436, 471
NotI GCGGCCGC 1 cut(s) 509
NspV TTCGAA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 231, 443
PfeI GAWTC 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 7 cut(s) 30, 35, 108, 111, 241, 510, 513
PleI GAGTC 5 cut(s) 256, 412, 421, 436, 442
PpsI GAGTC 5 cut(s) 256, 412, 421, 436, 442
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 7 cut(s) 16, 139, 144, 212, 264, 423, 443
PsuI RGATCY 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 2 cut(s) 302, 460
RsaNI GTAC 2 cut(s) 301, 459
Rsr2I CGGWCCG 2 cut(s) 139, 423
RsrII CGGWCCG 2 cut(s) 139, 423
SalI GTCGAC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 7 cut(s) 29, 34, 107, 110, 240, 509, 512
Sau3AI GATC 2 cut(s) 4, 258
Sau96I GGNCC 7 cut(s) 16, 139, 144, 212, 264, 423, 443
SchI GAGTC 5 cut(s) 257, 412, 422, 437, 443
ScrFI CCNGG 4 cut(s) 19, 155, 244, 253
SetI ASST 4 cut(s) 114, 135, 152, 201
SfaNI GCATC 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 4 cut(s) 139, 144, 264, 423
Sse9I AATT 2 cut(s) 368, 495
StyD4I CCNGG 4 cut(s) 17, 153, 242, 251
TaaI ACNGT 4 cut(s) 173, 300, 400, 406
TaqI TCGA 4 cut(s) 129, 159, 180, 416
TaqII GACCGA 1 cut(s) 440
TasI AATT 2 cut(s) 368, 495
TatI WGTACW 1 cut(s) 458
TauI GCSGC 4 cut(s) 36, 242, 511, 514
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseI GCWGC 3 cut(s) 28, 106, 109
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 4 cut(s) 139, 144, 264, 423
XmiI GTMKAC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.