RLG00000035064

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
60093614 .. 60106598
12985 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035064

Sequence Viewer

Length: 654 bp
ATGATCTCGCTCCCTTTCAGTGGCGGATGCTTCATTGCTGTCAAGGAAGTTTCCTTGCTTGATCAAGGAAAAGTTTCTCAACTTGAACAGGATGAATCAAAGCTCTATATCTTTCTGGAACTTGTAACCAAAGGCTCCCTTCAAAAACTATATCAAACGTACCCTCTTACAGATTTGCATGTCTCTGTATACATTAGACAGATCTTGCAAGGTCTGAAGTATCTTCACGGCCAAAATGTGATTCACAGGGACATTAAATGCGCAAATATTTTGGTGCATGCTAATGGATCTGTGAAGCTTGCAGACTTTGGCTTGGCAAAGTTTCCACAAGGTTGTGAATTATTTCTCTTTATACTGTGTGTTGCGTCCTCTTTCCGGACTATCAAAATGAACGACATAATATCTTGCCCAGGAACTGCAAACTGGATGGCCCCTGAGATGGCGGCATTATGGAAAATTATGAAGGGGCAGCCCCCTCTGGTTCCTGATTCTCTTTCAAGGGAGGCACAAGATTTTATCCATCTATGCTTGCAAGTTGAGCCAGATAATCGTCCCACTGCTGCTCAGCTTTTAAAACATCCATTTGTAAATAAGCCCCTTCCTCCCACGTCTTCTGGATCAGTATCTCCTTACAATCACCACAGGCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.2

Weight (kDa)

8.5

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 28 - 147 2.4e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 31 - 107 1.2e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 161 - 196 8.1e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 262
AccI GTMKAC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 375
AciI CCGC 2 cut(s) 24, 443
AclWI GGATC 2 cut(s) 295, 625
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 20, 375, 439
AgsI TTSAA 3 cut(s) 86, 143, 498
AjiI CACGTC 1 cut(s) 609
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 103, 298, 568
AluI AGCT 3 cut(s) 103, 298, 568
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 295, 625
AlwNI CAGNNNCTG 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 2 cut(s) 229, 429
ApeKI GCWGC 2 cut(s) 469, 560
Asp700I GAANNNNTTC 2 cut(s) 73, 342
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 481, 547
BccI CCATC 3 cut(s) 421, 433, 528
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 187
BglII AGATCT 1 cut(s) 201
BisI GCNGC 3 cut(s) 444, 470, 561
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 3 cut(s) 445, 471, 562
Bme1390I CCNGG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 136, 432, 483
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 375, 439
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 622
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 4 cut(s) 32, 97, 432, 577
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 3 cut(s) 20, 375, 439
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 426, 578
BseNI ACTGG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 481, 547
BshFI GGCC 2 cut(s) 231, 431
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 263, 537
BslI CCNNNNNNNGG 3 cut(s) 20, 375, 439
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 263, 537
BsnI GGCC 2 cut(s) 231, 431
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 3, 61, 201, 287, 617
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 2 cut(s) 24, 443
BspANI GGCC 2 cut(s) 231, 431
BspCNI CTCAG 2 cut(s) 427, 577
BspEI TCCGGA 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 136, 432, 483
BspPI GGATC 2 cut(s) 295, 625
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 5 cut(s) 3, 61, 201, 287, 617
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 357
BstC8I GCNNGC 3 cut(s) 279, 300, 530
BstDEI CTNAG 2 cut(s) 435, 564
BstF5I GGATG 4 cut(s) 32, 97, 432, 577
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 5 cut(s) 6, 64, 204, 290, 620
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 5 cut(s) 3, 61, 201, 287, 617
BstMWI GCNNNNNNNGC 1 cut(s) 538
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 182, 281
BstSCI CCNGG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 481, 547
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 2 cut(s) 201, 287
BstYI RGATCY 2 cut(s) 201, 287
BstZ17I GTATAC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 231, 431
BtrI CACGTC 1 cut(s) 609
BtsCI GGATG 4 cut(s) 32, 97, 432, 577
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 2 cut(s) 25, 555
Cac8I GCNNGC 3 cut(s) 279, 300, 530
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 179, 278
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 435, 564
DpnI GATC 5 cut(s) 5, 63, 203, 289, 619
DpnII GATC 5 cut(s) 3, 61, 201, 287, 617
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 229
EciI GGCGGA 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 182, 281
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 2 cut(s) 263, 537
FatI CATG 2 cut(s) 178, 277
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 444, 470, 561
FokI GGATG 4 cut(s) 39, 104, 439, 564
Fsp4HI GCNGC 3 cut(s) 444, 470, 561
FspI TGCGCA 1 cut(s) 262
GlaI GCGC 1 cut(s) 262
GluI GCNGC 3 cut(s) 444, 470, 561
HaeIII GGCC 2 cut(s) 231, 431
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 354
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 182, 281
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 95, 241, 488
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 4 cut(s) 116, 376, 485, 615
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 149, 457, 608
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 2 cut(s) 158, 608
HpyCH4V TGCA 6 cut(s) 178, 208, 277, 302, 419, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 538
HpyF3I CTNAG 2 cut(s) 435, 564
HpySE526I ACGT 2 cut(s) 158, 608
Hsp92II CATG 2 cut(s) 182, 281
HspAI GCGC 1 cut(s) 261
Kpn2I TCCGGA 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 3, 61, 201, 287, 617
LmnI GCTCC 2 cut(s) 15, 140
Lsp1109I GCAGC 2 cut(s) 481, 547
LweI GCATC 1 cut(s) 17
MaeII ACGT 2 cut(s) 158, 608
MaeIII GTNAC 1 cut(s) 124
MalI GATC 5 cut(s) 5, 63, 203, 289, 619
MboI GATC 5 cut(s) 3, 61, 201, 287, 617
MboII GAAGA 2 cut(s) 215, 603
MflI RGATCY 2 cut(s) 201, 287
MluCI AATT 2 cut(s) 338, 456
MnlI CCTC 5 cut(s) 174, 379, 486, 496, 612
MroI TCCGGA 1 cut(s) 375
MroXI GAANNNNTTC 2 cut(s) 73, 342
MseI TTAA 2 cut(s) 255, 572
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 538
NdeII GATC 5 cut(s) 3, 61, 201, 287, 617
NlaIII CATG 2 cut(s) 182, 281
NlaIV GGNNCC 3 cut(s) 136, 432, 483
NsbI TGCGCA 1 cut(s) 262
NspI RCATGY 2 cut(s) 182, 281
PaeI GCATGC 1 cut(s) 281
PdmI GAANNNNTTC 2 cut(s) 73, 342
PfeI GAWTC 3 cut(s) 95, 241, 488
PkrI GCNGC 3 cut(s) 445, 471, 562
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 136, 432, 483
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 201, 287
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 255, 572
SatI GCNGC 3 cut(s) 444, 470, 561
Sau3AI GATC 5 cut(s) 3, 61, 201, 287, 617
Sau96I GGNCC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 411
SetI ASST 7 cut(s) 105, 161, 214, 300, 334, 570, 611
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 282
SphI GCATGC 1 cut(s) 281
Sse9I AATT 2 cut(s) 338, 456
SsiI CCGC 2 cut(s) 24, 443
SspI AATATT 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 2 cut(s) 161, 611
TasI AATT 2 cut(s) 338, 456
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 3 cut(s) 95, 241, 488
Tru1I TTAA 2 cut(s) 255, 572
Tru9I TTAA 2 cut(s) 255, 572
TscAI CASTG 2 cut(s) 25, 562
TseI GCWGC 2 cut(s) 469, 560
TspDTI ATGAA 4 cut(s) 22, 108, 404, 476
TspRI CASTG 2 cut(s) 25, 562
XceI RCATGY 2 cut(s) 182, 281
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 73, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.