Rorug01G0225600

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
32407329 .. 32408425
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0225600.1

Sequence Viewer

Length: 795 bp
ATGCCACCACATATGGGCAATTTCAAGGACCTGCAGATACTAACCGAGTTTGTGCTGGATAAGTATACTGAAGGCCATAATGCTCTAGAGCTAAAGAAGCTTCAAACTTTGCATGGAACACTTTGTATTTCAGGGCTTCGAAATGTTGTGAATGGCAGTGCTTTGGTGGCCAACATTGTGACGGACAAGAAGTTTCTTATTGGATTAAATTTGTTTTGGGGATATATATGTGAAGAAGACAATATGGTAGAAGAAAGAGAAGTGCTTGATAAGCTCCAACCTCCCCTGAACCTAAAAATCTTGAAATTATGGGTTATGGAGGCAAAATGTTTCCAGCTTGACTGTCCCAATCTTACTGGGAGATTAGCATTAGACAGCTTTCCAATACTGGAAGAGCTCCAATTGTCTTGTACAAATTTATCCCTATTTACTAGTTCACATGAATGCCCCAAACTAGTTTCTCTCAGTCAATTGAAATTGAGTAAGTGCAGAAATGTTGCATCTTTTGCTGGTGGAGGGTTTCACGTGCCCAACTTGACAGAGATAAGTATCTCTGATTGTTGGGGTCTGGGTTCATGGCCGGAACAAATGCACTTCCTTCTCCCATGTATTCAGTTTTTGTCCATATCAGAATCTCCAAAATTGGAATATTTGCTGTCAAAATTAAAATCAGTGGGCATCAAGCAAAGTAACAGACTCGATGCAAGCAGTATGCAGAATATGAAGAATGGTCTCCGAACACTGACCGCTCTTAATAGATTTTCTATTAACTTCCGTCCATTTTTGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

264

Amino Acids

29.76

Weight (kDa)

8.33

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 30 - 162 1.1e-13 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccBSI CCGCTC 1 cut(s) 749
AccI GTMKAC 1 cut(s) 65
AciI CCGC 1 cut(s) 747
AcoI YGGCCR 2 cut(s) 168, 578
AcsI RAATTY 2 cut(s) 208, 415
AcuI CTGAAG 1 cut(s) 90
AcvI CACGTG 1 cut(s) 526
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 5 cut(s) 25, 104, 304, 475, 787
AhlI ACTAGT 2 cut(s) 431, 454
AluBI AGCT 6 cut(s) 91, 100, 274, 337, 378, 397
AluI AGCT 6 cut(s) 91, 100, 274, 337, 378, 397
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 737
AoxI GGCC 3 cut(s) 73, 168, 578
ApoI RAATTY 2 cut(s) 208, 415
AspS9I GGNCC 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 399
BbrPI CACGTG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 2 cut(s) 431, 454
BfaI CTAG 3 cut(s) 86, 432, 455
BfmI CTRYAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 509, 687, 691
BmuI ACTGGG 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 737
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 361, 393
Bse8I GATNNNNATC 1 cut(s) 548
BseJI GATNNNNATC 1 cut(s) 548
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 478
BseNI ACTGG 2 cut(s) 361, 393
BseSI GKGCMC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 508
BshFI GGCC 3 cut(s) 75, 170, 580
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 3 cut(s) 75, 170, 580
Bso31I GGTCTC 1 cut(s) 737
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 399, 531
Bsp1407I TGTACA 1 cut(s) 410
BspACI CCGC 1 cut(s) 747
BspANI GGCC 3 cut(s) 75, 170, 580
BspCNI CTCAG 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 737
BsrBI CCGCTC 1 cut(s) 749
BsrGI TGTACA 1 cut(s) 410
BsrI ACTGG 2 cut(s) 361, 393
BssNAI GTATAC 1 cut(s) 66
Bst1107I GTATAC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 1 cut(s) 464
BstMAI GTCTC 1 cut(s) 737
BstMWI GCNNNNNNNGC 4 cut(s) 97, 167, 271, 506
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 243
BstZ17I GTATAC 1 cut(s) 66
BsuRI GGCC 3 cut(s) 75, 170, 580
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 3 cut(s) 163, 678, 740
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 411
CviAII CATG 4 cut(s) 113, 440, 576, 606
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 1 cut(s) 464
EaeI YGGCCR 2 cut(s) 168, 578
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 90
Eco72I CACGTG 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 4 cut(s) 116, 443, 579, 609
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 112, 439, 575, 605
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 3 cut(s) 86, 432, 455
HaeIII GGCC 3 cut(s) 75, 170, 580
HapII CCGG 1 cut(s) 581
Hin1II CATG 4 cut(s) 116, 443, 579, 609
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 632, 696
HpaII CCGG 1 cut(s) 581
Hpy166II GTNNAC 2 cut(s) 66, 437
Hpy188I TCNGA 3 cut(s) 556, 631, 737
Hpy188III TCNNGA 2 cut(s) 86, 301
Hpy8I GTNNAC 2 cut(s) 66, 437
HpyAV CCTTC 2 cut(s) 65, 608
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 7 cut(s) 34, 112, 489, 500, 592, 704, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 167, 271, 506
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 4 cut(s) 116, 443, 579, 609
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 279, 402
LweI GCATC 3 cut(s) 509, 687, 691
MaeI CTAG 3 cut(s) 86, 432, 455
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 178, 689
MbiI CCGCTC 1 cut(s) 749
MboII GAAGA 5 cut(s) 245, 248, 263, 404, 736
MfeI CAATTG 2 cut(s) 401, 470
MhlI GDGCHC 2 cut(s) 399, 531
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 9 cut(s) 19, 208, 305, 401, 415, 470, 476, 641, 662
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 3 cut(s) 291, 313, 509
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 4 cut(s) 206, 665, 753, 768
MslI CAYNNNNRTG 1 cut(s) 442
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 581
MunI CAATTG 2 cut(s) 401, 470
Mva1269I GAATGC 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 97, 167, 271, 506
NdeI CATATG 1 cut(s) 12
NlaIII CATG 4 cut(s) 116, 443, 579, 609
NmuCI GTSAC 1 cut(s) 178
NspV TTCGAA 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 387
PctI GAATGC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 632
PleI GAGTC 1 cut(s) 690
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 1 cut(s) 690
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 28
PspCI CACGTG 1 cut(s) 526
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 36
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 442
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 4 cut(s) 206, 665, 753, 768
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 690
SduI GDGCHC 2 cut(s) 399, 531
SfaNI GCATC 3 cut(s) 509, 687, 691
SfcI CTRYAG 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 139
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 442
SpeI ACTAGT 2 cut(s) 431, 454
Sse9I AATT 9 cut(s) 19, 208, 305, 401, 415, 470, 476, 641, 662
SsiI CCGC 1 cut(s) 747
SspI AATATT 1 cut(s) 650
SspMI CTAG 3 cut(s) 86, 432, 455
SstI GAGCTC 1 cut(s) 399
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 139, 699
TasI AATT 9 cut(s) 19, 208, 305, 401, 415, 470, 476, 641, 662
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 4 cut(s) 206, 665, 753, 768
Tru9I TTAA 4 cut(s) 206, 665, 753, 768
TscAI CASTG 3 cut(s) 163, 678, 747
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 456, 564, 737
TspGWI ACGGA 2 cut(s) 197, 764
TspRI CASTG 3 cut(s) 163, 678, 747
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 2 cut(s) 208, 415
XbaI TCTAGA 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 3 cut(s) 86, 432, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.