Rh5CG563500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000243
Physical Location & Seq
Reverse (-)
79271574 .. 79277610
6037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG563500.1

Sequence Viewer

Length: 252 bp
ATGACAAATTATTTTCAGGTTGGTCTACAGAACACCAAAGGAGACCGGCCAATTGAATTTGGTCCACATTCAACAATTAAATTTGGTAGAACACCAAAGGAGACCGGTCAATTGAATTTGGTCCACATTCAACAATTAAATTTGCACTACTTTTATTTGGTCAATTGGTCTTATTGGGGACAAATTAACCCAACTGCCTTTGTCCCTGAATCTAAAGATGTGGTTCATTCTGCAGAACTCCGTAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.65

Weight (kDa)

9.16

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 4 cut(s) 56, 80, 115, 139
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 4 cut(s) 56, 72, 115, 131
Alw26I GTCTC 2 cut(s) 36, 95
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 4 cut(s) 56, 80, 115, 139
AsiGI ACCGGT 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 62, 121
AvaII GGWCC 2 cut(s) 62, 121
BcoDI GTCTC 2 cut(s) 36, 95
BfmI CTRYAG 2 cut(s) 26, 231
BglII AGATCT 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 62, 121
BmgT120I GGNCC 2 cut(s) 62, 121
BsaI GGTCTC 2 cut(s) 36, 95
BsaWI WCCGGW 1 cut(s) 104
Bse118I RCCGGY 2 cut(s) 45, 104
BshFI GGCC 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 104
BsiSI CCGG 2 cut(s) 46, 105
BslFI GGGAC 2 cut(s) 188, 192
BsmAI GTCTC 2 cut(s) 36, 95
BsmFI GGGAC 2 cut(s) 188, 192
BsnI GGCC 1 cut(s) 49
Bso31I GGTCTC 2 cut(s) 36, 95
Bsp143I GATC 1 cut(s) 245
BspANI GGCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 235
BspTNI GGTCTC 2 cut(s) 36, 95
BsrFI RCCGGY 2 cut(s) 45, 104
BssAI RCCGGY 2 cut(s) 45, 104
BssMI GATC 1 cut(s) 245
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 2 cut(s) 36, 95
BstMBI GATC 1 cut(s) 245
BstSFI CTRYAG 2 cut(s) 26, 231
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 49
Cfr10I RCCGGY 2 cut(s) 45, 104
Cfr13I GGNCC 2 cut(s) 62, 121
CspAI ACCGGT 1 cut(s) 104
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 47
Eco31I GGTCTC 2 cut(s) 36, 95
Eco47I GGWCC 2 cut(s) 62, 121
FaqI GGGAC 2 cut(s) 188, 192
FblI GTMKAC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 46, 105
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 46, 105
Hpy166II GTNNAC 3 cut(s) 26, 65, 124
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 3 cut(s) 26, 65, 124
HpyCH4V TGCA 2 cut(s) 145, 233
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 2, 59, 118, 219
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MfeI CAATTG 3 cut(s) 51, 110, 163
MflI RGATCY 1 cut(s) 245
MseI TTAA 3 cut(s) 78, 137, 186
MspI CCGG 2 cut(s) 46, 105
MunI CAATTG 3 cut(s) 51, 110, 163
NdeII GATC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 104
PspPI GGNCC 2 cut(s) 62, 121
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 245
SaqAI TTAA 3 cut(s) 78, 137, 186
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 2 cut(s) 62, 121
SetI ASST 1 cut(s) 21
SfcI CTRYAG 2 cut(s) 26, 231
SgeI CNNG 4 cut(s) 29, 58, 117, 218
SinI GGWCC 2 cut(s) 62, 121
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 78, 137, 186
Tru9I TTAA 3 cut(s) 78, 137, 186
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 62, 121
XapI RAATTY 4 cut(s) 56, 80, 115, 139
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.