Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000243

Physical Location & Seq

Genomic Coordinates Reverse (-)

64434749 .. 64436137

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCTCCAACCAAGTCAGCTCAAACTGCTCGGAAATCAACCGGCGGTAAATTCCCCAAGAAGCGGCTGGGCACCCTGCCTGATAGAAAACCAGCAAACCCACCTCAGGTTGGTGCCCCAAGAACCTCTGTGATGGCACCACCACCGCCCCAAGCCACATTTTTGAGGGGAGGTTTAGTAAGCCCTGTGAATCTCAGAGCTGAGCTCTCCCAGCATTGTGCTTCTGTTGGCACTTATATGGACTGGTCCGATGCCACTATCCAGAATTTGACGAAAGAGCGAGACCTGGCCTTTAAGGAGAAAGACCTGGTCTCCAAGGAGCGAGACTTGGCTTATAAGGAGCGAGATTTGACCTTGAAGGAGTTAAAGGAGGTTCAAAAGGACTTGTCCAAGTGCCAATCTGAGTCGGAGCAGAGCCAGAAGAGCTTGGAACTATGCAAGAACCAATTTGAGGTTGAGAAGAGAAAGTTGACTGAAGATTTGATGCAGGACTTCCAAGAACAACTCTTCATGACAGAAAGCCAGCAGTACAGTGTTGGATACAGTGATTGCTCCAAGGGCAGATGCCACAGGCTTGGATGGACTTCGGAGCAGGTTGAAGTGTTTGCTGATGAGCTCTACTTCAGTGACATGGAGGAAGAAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

216

Amino Acids

24.47

Weight (kDa)

5.88

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca	FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica	MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica	Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis	pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis	RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata	RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora	Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa	Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha	Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana	Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	3 cut(s)	71, 113, 136
AciI	CCGC	3 cut(s)	45, 64, 146
AcsI	RAATTY	2 cut(s)	50, 265
AcuI	CTGAAG	2 cut(s)	495, 607
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	4 cut(s)	63, 106, 110, 451
AgsI	TTSAA	3 cut(s)	358, 377, 599
AjnI	CCWGG	2 cut(s)	285, 306
AluBI	AGCT	5 cut(s)	20, 200, 205, 426, 616
AluI	AGCT	5 cut(s)	20, 200, 205, 426, 616
Alw21I	GWGCWC	2 cut(s)	207, 618
Alw26I	GTCTC	4 cut(s)	9, 276, 316, 318
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	50, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspS9I	GGNCC	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	246
AxyI	CCTNAGG	1 cut(s)	105
BaeGI	GKGCMC	2 cut(s)	74, 118
BanI	GGYRCC	3 cut(s)	71, 113, 136
BanII	GRGCYC	2 cut(s)	207, 618
Bbv12I	GWGCWC	2 cut(s)	207, 618
BccI	CCATC	2 cut(s)	127, 573
BciT130I	CCWGG	2 cut(s)	287, 308
BciVI	GTATCC	1 cut(s)	533
BcoDI	GTCTC	4 cut(s)	9, 276, 316, 318
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	287, 308
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	4 cut(s)	73, 115, 138, 646
BmrFI	CCNGG	2 cut(s)	287, 308
BmsI	GCATC	3 cut(s)	241, 474, 554
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaI	GGTCTC	2 cut(s)	276, 316
BsaJI	CCNNGG	2 cut(s)	315, 555
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 296, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 106, 110, 451
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	287, 308
BseDI	CCNNGG	2 cut(s)	315, 555
BseGI	GGATG	1 cut(s)	584
BseLI	CCNNNNNNNGG	4 cut(s)	63, 106, 110, 451
BseMII	CTCAG	4 cut(s)	119, 192, 208, 393
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	2 cut(s)	74, 118
BseYI	CCCAGC	2 cut(s)	67, 210
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	3 cut(s)	71, 113, 136
BsiHKAI	GWGCWC	2 cut(s)	207, 618
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	4 cut(s)	63, 106, 110, 451
BsmAI	GTCTC	4 cut(s)	9, 276, 316, 318
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	2 cut(s)	276, 316
Bsp1286I	GDGCHC	4 cut(s)	74, 118, 207, 618
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	45, 64, 146
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	4 cut(s)	118, 193, 207, 394
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	4 cut(s)	73, 115, 138, 646
BspMI	ACCTGC	1 cut(s)	583
BspQI	GCTCTTC	1 cut(s)	416
BspT107I	GGYRCC	3 cut(s)	71, 113, 136
BspTNI	GGTCTC	2 cut(s)	276, 316
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	315, 555
BssT1I	CCWWGG	2 cut(s)	315, 555
Bst2UI	CCWGG	2 cut(s)	287, 308
Bst4CI	ACNGT	2 cut(s)	533, 545
Bst6I	CTCTTC	3 cut(s)	416, 455, 512
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	4 cut(s)	105, 194, 201, 402
BstF5I	GGATG	1 cut(s)	584
BstMAI	GTCTC	4 cut(s)	9, 276, 316, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 211, 423, 558
BstNI	CCWGG	2 cut(s)	287, 308
BstSCI	CCNGG	2 cut(s)	285, 306
BstSLI	GKGCMC	2 cut(s)	74, 118
BstXI	CCANNNNNNTGG	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	3 cut(s)	538, 550, 631
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	524
CciI	TCATGA	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	2 cut(s)	511, 631
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	105, 194, 201, 402
Eam1104I	CTCTTC	3 cut(s)	416, 455, 512
EarI	CTCTTC	3 cut(s)	416, 455, 512
Ecl136II	GAGCTC	2 cut(s)	205, 616
Eco130I	CCWWGG	2 cut(s)	315, 555
Eco24I	GRGCYC	2 cut(s)	207, 618
Eco31I	GGTCTC	2 cut(s)	276, 316
Eco47I	GGWCC	1 cut(s)	246
Eco53kI	GAGCTC	2 cut(s)	205, 616
Eco57I	CTGAAG	2 cut(s)	495, 607
Eco81I	CCTNAGG	1 cut(s)	105
EcoICRI	GAGCTC	2 cut(s)	205, 616
EcoRII	CCWGG	2 cut(s)	285, 306
EcoT14I	CCWWGG	2 cut(s)	315, 555
EcoT38I	GRGCYC	2 cut(s)	207, 618
ErhI	CCWWGG	2 cut(s)	315, 555
FaeI	CATG	2 cut(s)	514, 634
FaiI	YATR	6 cut(s)	237, 239, 336, 436, 512, 632
FatI	CATG	2 cut(s)	510, 630
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	2 cut(s)	207, 618
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
GsaI	CCCAGC	2 cut(s)	71, 214
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	2 cut(s)	514, 634
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	2 cut(s)	190, 404
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	6 cut(s)	33, 197, 250, 403, 409, 589
Hpy188III	TCNNGA	2 cut(s)	262, 511
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	352, 635
HpyCH4III	ACNGT	2 cut(s)	533, 545
HpyCH4V	TGCA	2 cut(s)	438, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 211, 423, 558
HpyF3I	CTNAG	4 cut(s)	105, 194, 201, 402
Hsp92II	CATG	2 cut(s)	514, 634
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	6 cut(s)	319, 340, 409, 557, 589, 644
LweI	GCATC	3 cut(s)	241, 474, 554
MabI	ACCWGGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	626
MboII	GAAGA	5 cut(s)	433, 472, 488, 499, 650
MhlI	GDGCHC	4 cut(s)	74, 118, 207, 618
MluCI	AATT	3 cut(s)	50, 265, 446
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	3 cut(s)	32, 387, 517
MnlI	CCTC	7 cut(s)	114, 136, 159, 164, 364, 445, 628
MseI	TTAA	2 cut(s)	294, 365
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	287, 308
MvaI	CCWGG	2 cut(s)	287, 308
MwoI	GCNNNNNNNGC	4 cut(s)	26, 211, 423, 558
NlaIII	CATG	2 cut(s)	514, 634
NlaIV	GGNNCC	4 cut(s)	73, 115, 138, 646
NmuCI	GTSAC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	190
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	2 cut(s)	207, 618
Psp6I	CCWGG	2 cut(s)	285, 306
PspFI	CCCAGC	2 cut(s)	67, 210
PspGI	CCWGG	2 cut(s)	285, 306
PspN4I	GGNNCC	4 cut(s)	73, 115, 138, 646
PspPI	GGNCC	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	2 cut(s)	207, 618
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	294, 365
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	287, 308
SduI	GDGCHC	4 cut(s)	74, 118, 207, 618
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	3 cut(s)	241, 474, 554
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	50, 265, 446
SsiI	CCGC	3 cut(s)	45, 64, 146
SstI	GAGCTC	2 cut(s)	207, 618
StyD4I	CCNGG	2 cut(s)	285, 306
StyI	CCWWGG	2 cut(s)	315, 555
TaaI	ACNGT	2 cut(s)	533, 545
TasI	AATT	3 cut(s)	50, 265, 446
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	294, 365
Tru9I	TTAA	2 cut(s)	294, 365
TscAI	CASTG	3 cut(s)	538, 550, 631
TseFI	GTSAC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	499
TspRI	CASTG	3 cut(s)	538, 550, 631
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	2 cut(s)	50, 265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.