Rh4BG236600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
40236108 .. 40254089
17982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG236600.1

Sequence Viewer

Length: 234 bp
ATGTGGGATCTGAATGACCCTCCTAATCAGGGACGCGTGGAGGACGACGACACCGCCTCAGCCGACGGCAACGGAAAAAGTTGCTGCAGTTCGCACCACCTTGGCCGACGGCAACGGAAAAAGTTGCTGCAGTTCGCAACCCGGTGTTTCGCTGCTCTGATTCCTCCGATTCTGCCCCAAATCTTGGCAAAGCTTGGGTTTTTCCGCTACAATTCAGCTCCCTGGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

9.02

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000243)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08470 AT4G08470 AT4G08470 AT4G08480 AT4G08500
fragaria_vesca FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_2g26162 FvH4_3g43920 FvH4_3g44020 FvH4_5g29850 FvH4_5g38970
malus_domestica MD02G1097900.v1.1 MD08G1173000.v1.1 MD08G1227000.v1.1 MD15G1358300.v1.1 MD15G1419300.v1.1
prunus_persica Prupe.1G505700_v2.0.a1 Prupe.1G505700_v2.0.a1 Prupe.1G505800_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.1G564100_v2.0.a1 Prupe.7G007900_v2.0.a1
pyrus_communis pycom08g14750 pycom08g19800 pycom15g32060 pycom15g37220
rosa_chinensis RchiOBHm_Chr1g0352161 RchiOBHm_Chr5g0079491 RchiOBHm_Chr5g0080131 RchiOBHm_Chr5g0080301 RchiOBHm_Chr6g0294571 RchiOBHm_Chr6g0294581 RchiOBHm_Chr7g0223451 RchiOBHm_Chr7g0240941
rosa_laevigata RLG00000000612 RLG00000001964 RLG00000011858 RLG00000011859 RLG00000013468 RLG00000028354 RLG00000035064 RLG00000035074 RLG00000036819 RLG00000036822 RLG00000036849
rosa_multiflora Rmu_co7998012.1_g000001 Rmu_co8188232.1_g000001 Rmu_sc0001324.1_g000001 Rmu_sc0001599.1_g000021 Rmu_sc0006084.1_g000016 Rmu_sc0006264.1_g000020 Rmu_sc0007408.1_g000005 Rmu_sc0007806.1_g000004 Rmu_sc0008749.1_g000001 Rmu_sc0008957.1_g000002 Rmu_sc0011551.1_g000001
rosa_roxburghii Rroxscaffold_1G00003460 Rroxscaffold_3G00219400 Rroxscaffold_3G00235690 Rroxscaffold_4G00303130 Rroxscaffold_5G00380490 Rroxscaffold_7G00173210 Rroxscaffold_7G00173220
rosa_rugosa Rorug01G0225400 Rorug01G0225500 Rorug01G0225600 Rorug05G0464600 Rorug05G0464700 Rorug05G0465900 Rorug05G0467900 Rorug06G0246100 Rorug06G0246100 Rorug07G0217300 Rorug07G0217300 Rorug07G0340500
rosa_samantha Rh1AG239500 Rh1CG223900 Rh2CG299500 Rh2DG336700 Rh4BG236600 Rh5AG516900 Rh5AG517500 Rh5AG517700 Rh5AG518100 Rh5AG518500 Rh5AG519700 Rh5BG540800 Rh5CG563500 Rh5CG563700 Rh5DG038200 Rh6AG358400 Rh6BG365200 Rh6BG365300 Rh6BG365500 Rh7AG360500 Rh7AG495500 Rh7BG351100 Rh7BG466800 Rh7CG379000 Rh7CG379100 Rh7CG513000 Rh7DG356000
rosa_wichuraiana Rw0G023410 Rw1G020800 Rw5G048120 Rw5G048230 Rw5G048280 Rw5G048440 Rw6G031270 Rw7G029910 Rw7G030670 Rw7G041870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AccII CGCG 1 cut(s) 36
AciI CCGC 2 cut(s) 54, 205
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 29, 184
AflIII ACRYGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 2 cut(s) 193, 218
AluI AGCT 2 cut(s) 193, 218
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 84, 127, 152
AsuC2I CCSGG 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 71, 114, 139
BceAI ACGGC 2 cut(s) 82, 125
BciT130I CCWGG 1 cut(s) 223
BcnI CCSGG 1 cut(s) 142
BfmI CTRYAG 2 cut(s) 85, 128
BisI GCNGC 3 cut(s) 85, 128, 153
BlsI GCNGC 3 cut(s) 86, 129, 154
Bme1390I CCNGG 2 cut(s) 142, 223
BmrFI CCNGG 2 cut(s) 142, 223
Bpu10I CCTNAGC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 100, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 184
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 100, 221
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 29, 184
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 3 cut(s) 71, 114, 139
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 29, 184
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 54, 205
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 89, 132
BspPI GGATC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 100, 221
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 140, 221
BstSFI CTRYAG 2 cut(s) 85, 128
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 71, 114, 139
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 231
CseI GACGC 1 cut(s) 42
CviJI RGCY 4 cut(s) 62, 105, 193, 218
CviKI_1 RGCY 4 cut(s) 62, 105, 193, 218
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaqI GGGAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 85, 128, 153
Fsp4HI GCNGC 3 cut(s) 85, 128, 153
GluI GCNGC 3 cut(s) 85, 128, 153
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 142
HgaI GACGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 2 cut(s) 160, 169
HpaII CCGG 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 12, 159, 168
Hpy99I CGWCG 3 cut(s) 50, 68, 111
HpyCH4V TGCA 2 cut(s) 87, 130
HpyF3I CTNAG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 14, 155, 208
Lsp1109I GCAGC 3 cut(s) 71, 114, 139
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 211, 229
MluI ACGCGT 1 cut(s) 34
MnlI CCTC 4 cut(s) 30, 34, 67, 174
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 142, 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 1 cut(s) 36
NciI CCSGG 1 cut(s) 142
NdeII GATC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 160, 169
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 3 cut(s) 86, 129, 154
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PstI CTGCAG 2 cut(s) 89, 132
PsuI RGATCY 1 cut(s) 7
SatI GCNGC 3 cut(s) 85, 128, 153
Sau3AI GATC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 142, 223
SetI ASST 3 cut(s) 102, 195, 220
SfcI CTRYAG 2 cut(s) 85, 128
SgeI CNNG 8 cut(s) 41, 47, 49, 113, 153, 154, 196, 206
Sse9I AATT 2 cut(s) 211, 229
SsiI CCGC 2 cut(s) 54, 205
StyD4I CCNGG 2 cut(s) 140, 221
StyI CCWWGG 1 cut(s) 100
TasI AATT 2 cut(s) 211, 229
TfiI GAWTC 2 cut(s) 160, 169
TseI GCWGC 3 cut(s) 84, 127, 152
TspGWI ACGGA 2 cut(s) 87, 130
Van91I CCANNNNNTGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.