Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 69 - 236 | 9.2e-49 | TIR domain |
| TIR_2 | PF13676 | 72 - 167 | 2.5e-15 | TIR domain |
| NB-ARC | PF00931 | 253 - 417 | 9.5e-31 | NB-ARC domain |
| LRR_8 | PF13855 | 622 - 680 | 4.5e-09 | Leucine rich repeat |
| LRR_14 | PF23598 | 624 - 753 | 6.7e-16 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 927 - 1048 | 2.4e-14 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 989 - 1104 | 3.4e-12 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1049, 3491 |
| Acc36I | ACCTGC | 3 cut(s) | 715, 2321, 2347 |
| AccB1I | GGYRCC | 2 cut(s) | 143, 3141 |
| AccBSI | CCGCTC | 1 cut(s) | 3139 |
| AccII | CGCG | 2 cut(s) | 1788, 3342 |
| AciI | CCGC | 8 cut(s) | 156, 159, 1367, 1788, 1891, 2543, 3139, 3340 |
| AclWI | GGATC | 6 cut(s) | 117, 491, 1906, 1965, 2436, 2481 |
| AcoI | YGGCCR | 3 cut(s) | 153, 615, 1781 |
| AcsI | RAATTY | 5 cut(s) | 1271, 2088, 2341, 2349, 2986 |
| AcuI | CTGAAG | 1 cut(s) | 2096 |
| AcvI | CACGTG | 1 cut(s) | 3023 |
| AcyI | GRCGYC | 1 cut(s) | 831 |
| AfaI | GTAC | 7 cut(s) | 818, 1634, 2246, 2518, 2681, 2715, 2862 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 71, 131, 1189, 2154, 2313, 2878, 3517 |
| AflIII | ACRYGT | 3 cut(s) | 856, 1846, 3022 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1486 |
| AhlI | ACTAGT | 1 cut(s) | 1970 |
| AjnI | CCWGG | 2 cut(s) | 2110, 2788 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2295, 2327, 2907, 2939 |
| Alw26I | GTCTC | 6 cut(s) | 694, 748, 980, 1024, 2006, 2799 |
| AlwI | GGATC | 6 cut(s) | 117, 491, 1906, 1965, 2436, 2481 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| AoxI | GGCC | 4 cut(s) | 153, 615, 1781, 2400 |
| ApoI | RAATTY | 5 cut(s) | 1271, 2088, 2341, 2349, 2986 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 741, 939 |
| AspLEI | GCGC | 3 cut(s) | 784, 866, 3344 |
| AspS9I | GGNCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| AsuC2I | CCSGG | 2 cut(s) | 1703, 3527 |
| AsuHPI | GGTGA | 8 cut(s) | 647, 1135, 1204, 2557, 2669, 2789, 3307, 3533 |
| AsuII | TTCGAA | 2 cut(s) | 735, 933 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| BaeGI | GKGCMC | 3 cut(s) | 1348, 1743, 3146 |
| BalI | TGGCCA | 2 cut(s) | 617, 1783 |
| BanI | GGYRCC | 2 cut(s) | 143, 3141 |
| BanII | GRGCYC | 2 cut(s) | 66, 723 |
| BbrPI | CACGTG | 1 cut(s) | 3023 |
| BbsI | GAAGAC | 4 cut(s) | 1307, 1527, 3129, 3191 |
| BccI | CCATC | 5 cut(s) | 134, 577, 1109, 1730, 2212 |
| BceAI | ACGGC | 1 cut(s) | 835 |
| BciT130I | CCWGG | 2 cut(s) | 2112, 2790 |
| BciVI | GTATCC | 1 cut(s) | 1699 |
| BclI | TGATCA | 3 cut(s) | 127, 643, 2659 |
| BcnI | CCSGG | 2 cut(s) | 1703, 3527 |
| BcoDI | GTCTC | 6 cut(s) | 694, 748, 980, 1024, 2006, 2799 |
| BcuI | ACTAGT | 1 cut(s) | 1970 |
| BfaI | CTAG | 9 cut(s) | 546, 1008, 1364, 1394, 1538, 1647, 1971, 2567, 3536 |
| BfmI | CTRYAG | 5 cut(s) | 278, 711, 1332, 2061, 2437 |
| BfoI | RGCGCY | 1 cut(s) | 785 |
| BfuAI | ACCTGC | 3 cut(s) | 715, 2321, 2347 |
| BfuI | GTATCC | 1 cut(s) | 1699 |
| BglII | AGATCT | 1 cut(s) | 2761 |
| Bme1390I | CCNGG | 4 cut(s) | 1703, 2112, 2790, 3527 |
| Bme18I | GGWCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1486 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgT120I | GGNCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| BmiI | GGNNCC | 7 cut(s) | 145, 234, 2982, 3143, 3359, 3407, 3509 |
| BmrFI | CCNGG | 4 cut(s) | 1703, 2112, 2790, 3527 |
| BmrI | ACTGGG | 2 cut(s) | 2281, 3404 |
| BmsI | GCATC | 9 cut(s) | 1423, 1573, 1677, 2362, 2650, 2761, 2918, 2958, 3459 |
| BmuI | ACTGGG | 2 cut(s) | 2281, 3404 |
| BpiI | GAAGAC | 4 cut(s) | 1307, 1527, 3129, 3191 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1026, 1058 |
| BpmI | CTGGAG | 2 cut(s) | 1856, 2900 |
| Bpu14I | TTCGAA | 2 cut(s) | 735, 933 |
| BpuEI | CTTGAG | 4 cut(s) | 241, 1195, 2621, 2792 |
| BpuMI | CCSGG | 2 cut(s) | 1703, 3527 |
| BsaAI | YACGTR | 2 cut(s) | 1849, 3023 |
| BsaBI | GATNNNNATC | 3 cut(s) | 50, 315, 1100 |
| BsaHI | GRCGYC | 1 cut(s) | 831 |
| BsaI | GGTCTC | 1 cut(s) | 2799 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2108, 2138, 2853, 2883 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 71, 131, 1189, 2154, 2313, 2878, 3517 |
| Bse1I | ACTGG | 4 cut(s) | 168, 2276, 2726, 3410 |
| Bse8I | GATNNNNATC | 3 cut(s) | 50, 315, 1100 |
| BseBI | CCWGG | 2 cut(s) | 2112, 2790 |
| BseGI | GGATG | 9 cut(s) | 313, 337, 1285, 1698, 2170, 2382, 2595, 2911, 2933 |
| BseJI | GATNNNNATC | 3 cut(s) | 50, 315, 1100 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 71, 131, 1189, 2154, 2313, 2878, 3517 |
| BseMII | CTCAG | 4 cut(s) | 51, 127, 2659, 2951 |
| BseNI | ACTGG | 4 cut(s) | 168, 2276, 2726, 3410 |
| BseSI | GKGCMC | 3 cut(s) | 1348, 1743, 3146 |
| BseX3I | CGGCCG | 1 cut(s) | 153 |
| BseYI | CCCAGC | 1 cut(s) | 1760 |
| BsgI | GTGCAG | 2 cut(s) | 1789, 3419 |
| Bsh1236I | CGCG | 2 cut(s) | 1788, 3342 |
| Bsh1285I | CGRYCG | 1 cut(s) | 156 |
| BshFI | GGCC | 4 cut(s) | 155, 617, 1783, 2402 |
| BshNI | GGYRCC | 2 cut(s) | 143, 3141 |
| BsiEI | CGRYCG | 1 cut(s) | 156 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BsiSI | CCGG | 2 cut(s) | 1702, 3526 |
| BslFI | GGGAC | 3 cut(s) | 1579, 2304, 3002 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 71, 131, 1189, 2154, 2313, 2878, 3517 |
| BsmAI | GTCTC | 6 cut(s) | 694, 748, 980, 1024, 2006, 2799 |
| BsmBI | CGTCTC | 1 cut(s) | 1024 |
| BsmFI | GGGAC | 3 cut(s) | 1579, 2304, 3002 |
| BsmI | GAATGC | 2 cut(s) | 1436, 1900 |
| BsnI | GGCC | 4 cut(s) | 155, 617, 1783, 2402 |
| Bso31I | GGTCTC | 1 cut(s) | 2799 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp119I | TTCGAA | 2 cut(s) | 735, 933 |
| Bsp1286I | GDGCHC | 5 cut(s) | 66, 723, 1348, 1743, 3146 |
| Bsp1407I | TGTACA | 1 cut(s) | 2244 |
| Bsp19I | CCATGG | 4 cut(s) | 723, 846, 1173, 2617 |
| BspACI | CCGC | 8 cut(s) | 156, 159, 1367, 1788, 1891, 2543, 3139, 3340 |
| BspANI | GGCC | 4 cut(s) | 155, 617, 1783, 2402 |
| BspCNI | CTCAG | 4 cut(s) | 52, 126, 2658, 2952 |
| BspFNI | CGCG | 2 cut(s) | 1788, 3342 |
| BspLI | GGNNCC | 7 cut(s) | 145, 234, 2982, 3143, 3359, 3407, 3509 |
| BspMAI | CTGCAG | 4 cut(s) | 282, 715, 1336, 2441 |
| BspMI | ACCTGC | 3 cut(s) | 715, 2321, 2347 |
| BspPI | GGATC | 6 cut(s) | 117, 491, 1906, 1965, 2436, 2481 |
| BspT104I | TTCGAA | 2 cut(s) | 735, 933 |
| BspT107I | GGYRCC | 2 cut(s) | 143, 3141 |
| BspTNI | GGTCTC | 1 cut(s) | 2799 |
| BsrBI | CCGCTC | 1 cut(s) | 3139 |
| BsrGI | TGTACA | 1 cut(s) | 2244 |
| BsrI | ACTGG | 4 cut(s) | 168, 2276, 2726, 3410 |
| BssNI | GRCGYC | 1 cut(s) | 831 |
| BssT1I | CCWWGG | 7 cut(s) | 723, 846, 1173, 2490, 2584, 2617, 3564 |
| Bst2UI | CCWGG | 2 cut(s) | 2112, 2790 |
| Bst4CI | ACNGT | 5 cut(s) | 467, 1204, 2258, 3190, 3256 |
| Bst6I | CTCTTC | 6 cut(s) | 184, 515, 732, 2739, 3331, 3341 |
| BstACI | GRCGYC | 1 cut(s) | 831 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 167, 1331, 2824 |
| BstAUI | TGTACA | 1 cut(s) | 2244 |
| BstBAI | YACGTR | 2 cut(s) | 1849, 3023 |
| BstBI | TTCGAA | 2 cut(s) | 735, 933 |
| BstC8I | GCNNGC | 4 cut(s) | 874, 1300, 1652, 3068 |
| BstDSI | CCRYGG | 4 cut(s) | 723, 846, 1173, 2617 |
| BstEII | GGTNACC | 2 cut(s) | 1192, 3521 |
| BstF5I | GGATG | 9 cut(s) | 313, 337, 1285, 1698, 2170, 2382, 2595, 2911, 2933 |
| BstFNI | CGCG | 2 cut(s) | 1788, 3342 |
| BstH2I | RGCGCY | 1 cut(s) | 785 |
| BstHHI | GCGC | 3 cut(s) | 784, 866, 3344 |
| BstMAI | GTCTC | 6 cut(s) | 694, 748, 980, 1024, 2006, 2799 |
| BstMCI | CGRYCG | 1 cut(s) | 156 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 828, 1331, 2824 |
| BstNI | CCWGG | 2 cut(s) | 2112, 2790 |
| BstNSI | RCATGY | 2 cut(s) | 860, 2251 |
| BstPI | GGTNACC | 2 cut(s) | 1192, 3521 |
| BstSCI | CCNGG | 4 cut(s) | 1701, 2110, 2788, 3525 |
| BstSFI | CTRYAG | 5 cut(s) | 278, 711, 1332, 2061, 2437 |
| BstSLI | GKGCMC | 3 cut(s) | 1348, 1743, 3146 |
| BstUI | CGCG | 2 cut(s) | 1788, 3342 |
| BstV2I | GAAGAC | 4 cut(s) | 1307, 1527, 3129, 3191 |
| BstX2I | RGATCY | 6 cut(s) | 109, 1911, 1957, 2441, 2486, 2761 |
| BstYI | RGATCY | 6 cut(s) | 109, 1911, 1957, 2441, 2486, 2761 |
| BstZI | CGGCCG | 1 cut(s) | 153 |
| BsuI | GTATCC | 1 cut(s) | 1699 |
| BsuRI | GGCC | 4 cut(s) | 155, 617, 1783, 2402 |
| BtgI | CCRYGG | 4 cut(s) | 723, 846, 1173, 2617 |
| BtgZI | GCGATG | 1 cut(s) | 37 |
| BtsCI | GGATG | 9 cut(s) | 313, 337, 1285, 1698, 2170, 2382, 2595, 2911, 2933 |
| BtsI | GCAGTG | 1 cut(s) | 1806 |
| BtsIMutI | CAGTG | 7 cut(s) | 121, 161, 1200, 1806, 2176, 2733, 2997 |
| BveI | ACCTGC | 3 cut(s) | 715, 2321, 2347 |
| Cac8I | GCNNGC | 4 cut(s) | 874, 1300, 1652, 3068 |
| CfoI | GCGC | 3 cut(s) | 784, 866, 3344 |
| Cfr13I | GGNCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| CseI | GACGC | 2 cut(s) | 820, 956 |
| Csp6I | GTAC | 7 cut(s) | 817, 1633, 2245, 2517, 2680, 2714, 2861 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1255, 1275, 1290, 1310 |
| CviQI | GTAC | 7 cut(s) | 817, 1633, 2245, 2517, 2680, 2714, 2861 |
| DraI | TTTAAA | 4 cut(s) | 606, 1773, 1905, 2895 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1486 |
| EaeI | YGGCCR | 3 cut(s) | 153, 615, 1781 |
| EagI | CGGCCG | 1 cut(s) | 153 |
| Eam1104I | CTCTTC | 6 cut(s) | 184, 515, 732, 2739, 3331, 3341 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1486 |
| EarI | CTCTTC | 6 cut(s) | 184, 515, 732, 2739, 3331, 3341 |
| EclXI | CGGCCG | 1 cut(s) | 153 |
| Eco130I | CCWWGG | 7 cut(s) | 723, 846, 1173, 2490, 2584, 2617, 3564 |
| Eco24I | GRGCYC | 2 cut(s) | 66, 723 |
| Eco31I | GGTCTC | 1 cut(s) | 2799 |
| Eco32I | GATATC | 2 cut(s) | 515, 2217 |
| Eco47I | GGWCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| Eco52I | CGGCCG | 1 cut(s) | 153 |
| Eco57I | CTGAAG | 1 cut(s) | 2096 |
| Eco72I | CACGTG | 1 cut(s) | 3023 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| Eco91I | GGTNACC | 2 cut(s) | 1192, 3521 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| EcoO65I | GGTNACC | 2 cut(s) | 1192, 3521 |
| EcoRII | CCWGG | 2 cut(s) | 2110, 2788 |
| EcoRV | GATATC | 2 cut(s) | 515, 2217 |
| EcoT14I | CCWWGG | 7 cut(s) | 723, 846, 1173, 2490, 2584, 2617, 3564 |
| EcoT22I | ATGCAT | 4 cut(s) | 455, 1438, 1692, 2973 |
| EcoT38I | GRGCYC | 2 cut(s) | 66, 723 |
| ErhI | CCWWGG | 7 cut(s) | 723, 846, 1173, 2490, 2584, 2617, 3564 |
| Esp3I | CGTCTC | 1 cut(s) | 1024 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1240, 1272, 1478, 1510 |
| FaqI | GGGAC | 3 cut(s) | 1579, 2304, 3002 |
| FauNDI | CATATG | 2 cut(s) | 2820, 2901 |
| FbaI | TGATCA | 3 cut(s) | 127, 643, 2659 |
| FokI | GGATG | 9 cut(s) | 320, 344, 1292, 1685, 2177, 2369, 2602, 2918, 2940 |
| FriOI | GRGCYC | 2 cut(s) | 66, 723 |
| FspBI | CTAG | 9 cut(s) | 546, 1008, 1364, 1394, 1538, 1647, 1971, 2567, 3536 |
| GlaI | GCGC | 3 cut(s) | 783, 865, 3343 |
| GsaI | CCCAGC | 1 cut(s) | 1764 |
| GsuI | CTGGAG | 2 cut(s) | 1856, 2900 |
| HaeII | RGCGCY | 1 cut(s) | 785 |
| HaeIII | GGCC | 4 cut(s) | 155, 617, 1783, 2402 |
| HapII | CCGG | 2 cut(s) | 1702, 3526 |
| HgaI | GACGC | 2 cut(s) | 820, 956 |
| HhaI | GCGC | 3 cut(s) | 784, 866, 3344 |
| Hin1I | GRCGYC | 1 cut(s) | 831 |
| Hin6I | GCGC | 3 cut(s) | 782, 864, 3342 |
| HinP1I | GCGC | 3 cut(s) | 782, 864, 3342 |
| HindIII | AAGCTT | 3 cut(s) | 537, 2019, 2081 |
| HpaII | CCGG | 2 cut(s) | 1702, 3526 |
| HphI | GGTGA | 8 cut(s) | 647, 1135, 1204, 2557, 2669, 2789, 3307, 3533 |
| Hpy166II | GTNNAC | 8 cut(s) | 17, 817, 1266, 2419, 2680, 3087, 3175, 3298 |
| Hpy8I | GTNNAC | 8 cut(s) | 17, 817, 1266, 2419, 2680, 3087, 3175, 3298 |
| Hpy99I | CGWCG | 1 cut(s) | 836 |
| HpyAV | CCTTC | 7 cut(s) | 772, 1245, 1793, 2927, 3214, 3282, 3355 |
| HpyCH4III | ACNGT | 5 cut(s) | 467, 1204, 2258, 3190, 3256 |
| HpyCH4IV | ACGT | 2 cut(s) | 1848, 3022 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 828, 1331, 2824 |
| HpySE526I | ACGT | 2 cut(s) | 1848, 3022 |
| Hsp92I | GRCGYC | 1 cut(s) | 831 |
| HspAI | GCGC | 3 cut(s) | 782, 864, 3342 |
| Ksp22I | TGATCA | 3 cut(s) | 127, 643, 2659 |
| LmnI | GCTCC | 3 cut(s) | 1111, 2504, 3513 |
| LweI | GCATC | 9 cut(s) | 1423, 1573, 1677, 2362, 2650, 2761, 2918, 2958, 3459 |
| MaeI | CTAG | 9 cut(s) | 546, 1008, 1364, 1394, 1538, 1647, 1971, 2567, 3536 |
| MaeII | ACGT | 2 cut(s) | 1848, 3022 |
| MaeIII | GTNAC | 8 cut(s) | 116, 1192, 2194, 2545, 2594, 2625, 2781, 3521 |
| MbiI | CCGCTC | 1 cut(s) | 3139 |
| MfeI | CAATTG | 2 cut(s) | 381, 3116 |
| MflI | RGATCY | 6 cut(s) | 109, 1911, 1957, 2441, 2486, 2761 |
| MhlI | GDGCHC | 5 cut(s) | 66, 723, 1348, 1743, 3146 |
| MlsI | TGGCCA | 2 cut(s) | 617, 1783 |
| MluNI | TGGCCA | 2 cut(s) | 617, 1783 |
| MlyI | GAGTC | 7 cut(s) | 113, 646, 665, 1088, 1271, 2862, 3046 |
| MmeI | TCCRAC | 1 cut(s) | 368 |
| Mox20I | TGGCCA | 2 cut(s) | 617, 1783 |
| Mph1103I | ATGCAT | 4 cut(s) | 455, 1438, 1692, 2973 |
| MroXI | GAANNNNTTC | 2 cut(s) | 741, 939 |
| MscI | TGGCCA | 2 cut(s) | 617, 1783 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1441, 2904, 3545 |
| Msp20I | TGGCCA | 2 cut(s) | 617, 1783 |
| MspA1I | CMGCKG | 2 cut(s) | 194, 3433 |
| MspI | CCGG | 2 cut(s) | 1702, 3526 |
| MspR9I | CCNGG | 4 cut(s) | 1703, 2112, 2790, 3527 |
| MunI | CAATTG | 2 cut(s) | 381, 3116 |
| Mva1269I | GAATGC | 2 cut(s) | 1436, 1900 |
| MvaI | CCWGG | 2 cut(s) | 2112, 2790 |
| MvnI | CGCG | 2 cut(s) | 1788, 3342 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 828, 1331, 2824 |
| NciI | CCSGG | 2 cut(s) | 1703, 3527 |
| NcoI | CCATGG | 4 cut(s) | 723, 846, 1173, 2617 |
| NdeI | CATATG | 2 cut(s) | 2820, 2901 |
| NlaIV | GGNNCC | 7 cut(s) | 145, 234, 2982, 3143, 3359, 3407, 3509 |
| NmeAIII | GCCGAG | 1 cut(s) | 131 |
| NmuCI | GTSAC | 6 cut(s) | 116, 1192, 2194, 2545, 2594, 3521 |
| NsiI | ATGCAT | 4 cut(s) | 455, 1438, 1692, 2973 |
| NspI | RCATGY | 2 cut(s) | 860, 2251 |
| NspV | TTCGAA | 2 cut(s) | 735, 933 |
| PciI | ACATGT | 1 cut(s) | 856 |
| PctI | GAATGC | 2 cut(s) | 1436, 1900 |
| PdmI | GAANNNNTTC | 2 cut(s) | 741, 939 |
| PfeI | GAWTC | 9 cut(s) | 368, 471, 572, 683, 1096, 1220, 1619, 1643, 2803 |
| PfoI | TCCNGGA | 1 cut(s) | 1701 |
| PleI | GAGTC | 7 cut(s) | 113, 646, 665, 1087, 1270, 2862, 3045 |
| PmaCI | CACGTG | 1 cut(s) | 3023 |
| PmlI | CACGTG | 1 cut(s) | 3023 |
| PpsI | GAGTC | 7 cut(s) | 113, 646, 665, 1087, 1270, 2862, 3045 |
| Ppu21I | YACGTR | 2 cut(s) | 1849, 3023 |
| PpuMI | RGGWCCY | 1 cut(s) | 233 |
| PscI | ACATGT | 1 cut(s) | 856 |
| PsiI | TTATAA | 2 cut(s) | 1049, 3491 |
| Psp5II | RGGWCCY | 1 cut(s) | 233 |
| Psp6I | CCWGG | 2 cut(s) | 2110, 2788 |
| PspCI | CACGTG | 1 cut(s) | 3023 |
| PspEI | GGTNACC | 2 cut(s) | 1192, 3521 |
| PspFI | CCCAGC | 1 cut(s) | 1760 |
| PspGI | CCWGG | 2 cut(s) | 2110, 2788 |
| PspN4I | GGNNCC | 7 cut(s) | 145, 234, 2982, 3143, 3359, 3407, 3509 |
| PspPI | GGNCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| PspPPI | RGGWCCY | 1 cut(s) | 233 |
| PstI | CTGCAG | 4 cut(s) | 282, 715, 1336, 2441 |
| PsuI | RGATCY | 6 cut(s) | 109, 1911, 1957, 2441, 2486, 2761 |
| PvuII | CAGCTG | 2 cut(s) | 194, 3433 |
| RsaI | GTAC | 7 cut(s) | 818, 1634, 2246, 2518, 2681, 2715, 2862 |
| RsaNI | GTAC | 7 cut(s) | 817, 1633, 2245, 2517, 2680, 2714, 2861 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1441, 2904, 3545 |
| Sau96I | GGNCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| SchI | GAGTC | 7 cut(s) | 113, 646, 665, 1088, 1271, 2862, 3046 |
| ScrFI | CCNGG | 4 cut(s) | 1703, 2112, 2790, 3527 |
| SduI | GDGCHC | 5 cut(s) | 66, 723, 1348, 1743, 3146 |
| SfaNI | GCATC | 9 cut(s) | 1423, 1573, 1677, 2362, 2650, 2761, 2918, 2958, 3459 |
| SfcI | CTRYAG | 5 cut(s) | 278, 711, 1332, 2061, 2437 |
| SfuI | TTCGAA | 2 cut(s) | 735, 933 |
| SinI | GGWCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| SmiI | ATTTAAAT | 2 cut(s) | 1905, 2895 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1441, 2904, 3545 |
| SmlI | CTYRAG | 4 cut(s) | 220, 1210, 2636, 2807 |
| SmoI | CTYRAG | 4 cut(s) | 220, 1210, 2636, 2807 |
| SpeI | ACTAGT | 1 cut(s) | 1970 |
| SsiI | CCGC | 8 cut(s) | 156, 159, 1367, 1788, 1891, 2543, 3139, 3340 |
| SspI | AATATT | 2 cut(s) | 1720, 2311 |
| SspMI | CTAG | 9 cut(s) | 546, 1008, 1364, 1394, 1538, 1647, 1971, 2567, 3536 |
| StyD4I | CCNGG | 4 cut(s) | 1701, 2110, 2788, 3525 |
| StyI | CCWWGG | 7 cut(s) | 723, 846, 1173, 2490, 2584, 2617, 3564 |
| SwaI | ATTTAAAT | 2 cut(s) | 1905, 2895 |
| TaaI | ACNGT | 5 cut(s) | 467, 1204, 2258, 3190, 3256 |
| TaiI | ACGT | 2 cut(s) | 1851, 3025 |
| TatI | WGTACW | 3 cut(s) | 2244, 2679, 2713 |
| TauI | GCSGC | 2 cut(s) | 158, 161 |
| TfiI | GAWTC | 9 cut(s) | 368, 471, 572, 683, 1096, 1220, 1619, 1643, 2803 |
| TscAI | CASTG | 7 cut(s) | 121, 168, 1207, 1813, 2176, 2733, 2997 |
| TseFI | GTSAC | 6 cut(s) | 116, 1192, 2194, 2545, 2594, 3521 |
| Tsp45I | GTSAC | 6 cut(s) | 116, 1192, 2194, 2545, 2594, 3521 |
| TspRI | CASTG | 7 cut(s) | 121, 168, 1207, 1813, 2176, 2733, 2997 |
| VpaK11BI | GGWCC | 5 cut(s) | 233, 1480, 2723, 2981, 3011 |
| XapI | RAATTY | 5 cut(s) | 1271, 2088, 2341, 2349, 2986 |
| XceI | RCATGY | 2 cut(s) | 860, 2251 |
| XmnI | GAANNNNTTC | 2 cut(s) | 741, 939 |
| XspI | CTAG | 9 cut(s) | 546, 1008, 1364, 1394, 1538, 1647, 1971, 2567, 3536 |
| Zsp2I | ATGCAT | 4 cut(s) | 455, 1438, 1692, 2973 |