Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

17420407 .. 17423668

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0200600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGTCGGCCAATGGAGGAAGAAGGTTCCAAGAATGAGGAAGAGGAATTCAATACTGGACCACTTTCTGTTCTGATGATGAGTGTCAAAAATAATACTCAGGTCCTCATCAATTGTCGTAATAACAGGAAGCTTCTTGGCCGTGTGAGGGCTTTTGATAGACATTGCAACATGGTCCTTGAGAATGTTAAGGAGATGTGGACCGAGGTCCCAAAAACTGGAAAGGGCAAGAAGAAAGCACAACCGGTTAACAAAGATAGATTCATCAGCAAAATGTTCCTCCGTGGTGATTCTGTGATTATAGTTCTTAGGAATCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

107

Amino Acids

12.39

Weight (kDa)

9.88

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	28 - 102	1.1e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	8, 139
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	148, 218
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AoxI	GGCC	2 cut(s)	8, 139
ApoI	RAATTY	1 cut(s)	47
AsiGI	ACCGGT	1 cut(s)	244
AspS9I	GGNCC	5 cut(s)	59, 103, 175, 201, 208
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	5 cut(s)	59, 103, 175, 201, 208
BceAI	ACGGC	1 cut(s)	126
Bme18I	GGWCC	5 cut(s)	59, 103, 175, 201, 208
BmgT120I	GGNCC	5 cut(s)	59, 103, 175, 201, 208
BmiI	GGNNCC	2 cut(s)	28, 210
BoxI	GACNNNNGTC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	204, 283
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 218
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	61, 223
Bse3DI	GCAATG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	204, 283
BseLI	CCNNNNNNNGG	2 cut(s)	148, 218
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	61, 223
BshFI	GGCC	2 cut(s)	10, 141
BshTI	ACCGGT	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	148, 218
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	10, 141
BspANI	GGCC	2 cut(s)	10, 141
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	28, 210
BsrDI	GCAATG	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	61, 223
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	204, 283
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	99, 308
BstDSI	CCRYGG	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	10, 141
BtgI	CCRYGG	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	5 cut(s)	59, 103, 175, 201, 208
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	10, 133, 141, 152
CviKI_1	RGCY	4 cut(s)	10, 133, 141, 152
DdeI	CTNAG	2 cut(s)	99, 308
EaeI	YGGCCR	2 cut(s)	8, 139
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	5 cut(s)	59, 103, 175, 201, 208
EcoO109I	RGGNCCY	2 cut(s)	103, 208
EcoRI	GAATTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	175
FaiI	YATR	2 cut(s)	173, 302
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	10, 141
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	4, 261, 290, 313
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	201, 250
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	201, 250
HpyAV	CCTTC	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	99, 308
Hsp92II	CATG	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	42, 86, 112, 204, 258
MboII	GAAGA	3 cut(s)	32, 53, 244
MfeI	CAATTG	1 cut(s)	112
MluCI	AATT	2 cut(s)	47, 112
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	10, 31, 37, 116, 141, 199, 290
MseI	TTAA	2 cut(s)	189, 249
MspI	CCGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	112
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	28, 210
PfeI	GAWTC	3 cut(s)	261, 290, 313
PflMI	CCANNNNNTGG	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	244
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	2 cut(s)	103, 208
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	2 cut(s)	103, 208
PspN4I	GGNNCC	2 cut(s)	28, 210
PspPI	GGNCC	5 cut(s)	59, 103, 175, 201, 208
PspPPI	RGGWCCY	2 cut(s)	103, 208
SaqAI	TTAA	2 cut(s)	189, 249
Sau96I	GGNCC	5 cut(s)	59, 103, 175, 201, 208
SchI	GAGTC	1 cut(s)	13
SetI	ASST	4 cut(s)	28, 105, 135, 210
SinI	GGWCC	5 cut(s)	59, 103, 175, 201, 208
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	47, 112
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	47, 112
TfiI	GAWTC	3 cut(s)	261, 290, 313
Tru1I	TTAA	2 cut(s)	189, 249
Tru9I	TTAA	2 cut(s)	189, 249
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	5 cut(s)	59, 103, 175, 201, 208
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.