Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 670, 678, 1060 |
| AcoI | YGGCCR | 2 cut(s) | 172, 331 |
| AcsI | RAATTY | 1 cut(s) | 877 |
| AcuI | CTGAAG | 1 cut(s) | 600 |
| AfaI | GTAC | 5 cut(s) | 442, 486, 583, 680, 754 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 596, 968 |
| AgsI | TTSAA | 7 cut(s) | 361, 540, 643, 737, 785, 821, 851 |
| AjnI | CCWGG | 1 cut(s) | 253 |
| AluBI | AGCT | 4 cut(s) | 427, 620, 627, 1082 |
| AluI | AGCT | 4 cut(s) | 427, 620, 627, 1082 |
| Alw21I | GWGCWC | 1 cut(s) | 844 |
| Alw26I | GTCTC | 1 cut(s) | 616 |
| AoxI | GGCC | 3 cut(s) | 172, 331, 388 |
| ApeKI | GCWGC | 1 cut(s) | 519 |
| ApoI | RAATTY | 1 cut(s) | 877 |
| AspS9I | GGNCC | 2 cut(s) | 44, 389 |
| AsuC2I | CCSGG | 2 cut(s) | 264, 826 |
| AvaII | GGWCC | 1 cut(s) | 44 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 623, 655 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 1 cut(s) | 844 |
| BbvI | GCAGC | 1 cut(s) | 506 |
| BccI | CCATC | 2 cut(s) | 227, 342 |
| BceAI | ACGGC | 1 cut(s) | 187 |
| BciT130I | CCWGG | 1 cut(s) | 255 |
| BcnI | CCSGG | 2 cut(s) | 264, 826 |
| BcoDI | GTCTC | 1 cut(s) | 616 |
| BfaI | CTAG | 2 cut(s) | 543, 621 |
| BfmI | CTRYAG | 1 cut(s) | 1077 |
| BfuAI | ACCTGC | 3 cut(s) | 670, 678, 1060 |
| BisI | GCNGC | 1 cut(s) | 520 |
| BlsI | GCNGC | 1 cut(s) | 521 |
| Bme1390I | CCNGG | 3 cut(s) | 255, 264, 826 |
| Bme18I | GGWCC | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 2 cut(s) | 44, 389 |
| BmiI | GGNNCC | 3 cut(s) | 46, 252, 391 |
| BmrFI | CCNGG | 3 cut(s) | 255, 264, 826 |
| BmrI | ACTGGG | 1 cut(s) | 302 |
| BmsI | GCATC | 2 cut(s) | 919, 1070 |
| BmuI | ACTGGG | 1 cut(s) | 302 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 3 cut(s) | 869, 992, 1068 |
| BpuMI | CCSGG | 2 cut(s) | 264, 826 |
| BsaJI | CCNNGG | 1 cut(s) | 824 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 596, 968 |
| Bse1I | ACTGG | 2 cut(s) | 308, 316 |
| Bse3DI | GCAATG | 1 cut(s) | 19 |
| BseBI | CCWGG | 1 cut(s) | 255 |
| BseDI | CCNNGG | 1 cut(s) | 824 |
| BseGI | GGATG | 2 cut(s) | 259, 714 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 596, 968 |
| BseMI | GCAATG | 1 cut(s) | 19 |
| BseNI | ACTGG | 2 cut(s) | 308, 316 |
| BseXI | GCAGC | 1 cut(s) | 506 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| BshFI | GGCC | 3 cut(s) | 174, 333, 390 |
| BsiHKAI | GWGCWC | 1 cut(s) | 844 |
| BsiSI | CCGG | 2 cut(s) | 264, 826 |
| BslFI | GGGAC | 2 cut(s) | 290, 360 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 596, 968 |
| BsmAI | GTCTC | 1 cut(s) | 616 |
| BsmFI | GGGAC | 2 cut(s) | 290, 360 |
| BsmI | GAATGC | 1 cut(s) | 571 |
| BsnI | GGCC | 3 cut(s) | 174, 333, 390 |
| Bsp1286I | GDGCHC | 1 cut(s) | 844 |
| Bsp1407I | TGTACA | 2 cut(s) | 581, 678 |
| Bsp143I | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| BspANI | GGCC | 3 cut(s) | 174, 333, 390 |
| BspHI | TCATGA | 1 cut(s) | 831 |
| BspLI | GGNNCC | 3 cut(s) | 46, 252, 391 |
| BspMI | ACCTGC | 3 cut(s) | 670, 678, 1060 |
| BspQI | GCTCTTC | 1 cut(s) | 352 |
| BsrDI | GCAATG | 1 cut(s) | 19 |
| BsrGI | TGTACA | 2 cut(s) | 581, 678 |
| BsrI | ACTGG | 2 cut(s) | 308, 316 |
| BssECI | CCNNGG | 1 cut(s) | 824 |
| BssMI | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| Bst2UI | CCWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 1 cut(s) | 304 |
| Bst6I | CTCTTC | 2 cut(s) | 352, 619 |
| BstAUI | TGTACA | 2 cut(s) | 581, 678 |
| BstC8I | GCNNGC | 3 cut(s) | 53, 565, 569 |
| BstDEI | CTNAG | 2 cut(s) | 66, 402 |
| BstF5I | GGATG | 2 cut(s) | 259, 714 |
| BstKTI | GATC | 7 cut(s) | 109, 127, 181, 213, 1003, 1014, 1090 |
| BstMAI | GTCTC | 1 cut(s) | 616 |
| BstMBI | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 285, 351 |
| BstNI | CCWGG | 1 cut(s) | 255 |
| BstNSI | RCATGY | 3 cut(s) | 567, 571, 588 |
| BstSCI | CCNGG | 3 cut(s) | 253, 262, 824 |
| BstSFI | CTRYAG | 1 cut(s) | 1077 |
| BstV1I | GCAGC | 1 cut(s) | 506 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BsuRI | GGCC | 3 cut(s) | 174, 333, 390 |
| BtsCI | GGATG | 2 cut(s) | 259, 714 |
| BtsIMutI | CAGTG | 1 cut(s) | 323 |
| BveI | ACCTGC | 3 cut(s) | 670, 678, 1060 |
| Cac8I | GCNNGC | 3 cut(s) | 53, 565, 569 |
| CciI | TCATGA | 1 cut(s) | 831 |
| Cfr13I | GGNCC | 2 cut(s) | 44, 389 |
| CseI | GACGC | 1 cut(s) | 902 |
| Csp6I | GTAC | 5 cut(s) | 441, 485, 582, 679, 753 |
| CviQI | GTAC | 5 cut(s) | 441, 485, 582, 679, 753 |
| DdeI | CTNAG | 2 cut(s) | 66, 402 |
| DpnI | GATC | 7 cut(s) | 108, 126, 180, 212, 1002, 1013, 1089 |
| DpnII | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| EaeI | YGGCCR | 2 cut(s) | 172, 331 |
| Eam1104I | CTCTTC | 2 cut(s) | 352, 619 |
| EarI | CTCTTC | 2 cut(s) | 352, 619 |
| Eco47I | GGWCC | 1 cut(s) | 44 |
| Eco57I | CTGAAG | 1 cut(s) | 600 |
| EcoO109I | RGGNCCY | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 253 |
| EcoT22I | ATGCAT | 2 cut(s) | 569, 573 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 474, 506, 931, 963 |
| FaqI | GGGAC | 2 cut(s) | 290, 360 |
| Fnu4HI | GCNGC | 1 cut(s) | 520 |
| FokI | GGATG | 2 cut(s) | 246, 701 |
| Fsp4HI | GCNGC | 1 cut(s) | 520 |
| FspBI | CTAG | 2 cut(s) | 543, 621 |
| GluI | GCNGC | 1 cut(s) | 520 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| HaeIII | GGCC | 3 cut(s) | 174, 333, 390 |
| HapII | CCGG | 2 cut(s) | 264, 826 |
| HgaI | GACGC | 1 cut(s) | 902 |
| HinfI | GANTC | 7 cut(s) | 206, 434, 478, 672, 772, 973, 992 |
| HpaII | CCGG | 2 cut(s) | 264, 826 |
| Hpy166II | GTNNAC | 1 cut(s) | 679 |
| Hpy188I | TCNGA | 1 cut(s) | 61 |
| Hpy188III | TCNNGA | 8 cut(s) | 80, 128, 182, 643, 737, 832, 1009, 1085 |
| Hpy8I | GTNNAC | 1 cut(s) | 679 |
| HpyAV | CCTTC | 4 cut(s) | 84, 403, 743, 866 |
| HpyCH4III | ACNGT | 1 cut(s) | 304 |
| HpyCH4IV | ACGT | 1 cut(s) | 755 |
| HpyCH4V | TGCA | 9 cut(s) | 522, 567, 571, 603, 665, 1023, 1055, 1061, 1099 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 285, 351 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 402 |
| HpySE526I | ACGT | 1 cut(s) | 755 |
| Kzo9I | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| LguI | GCTCTTC | 1 cut(s) | 352 |
| LmnI | GCTCC | 3 cut(s) | 250, 624, 847 |
| Lsp1109I | GCAGC | 1 cut(s) | 506 |
| LweI | GCATC | 2 cut(s) | 919, 1070 |
| MaeI | CTAG | 2 cut(s) | 543, 621 |
| MaeII | ACGT | 1 cut(s) | 755 |
| MaeIII | GTNAC | 2 cut(s) | 320, 808 |
| MalI | GATC | 7 cut(s) | 108, 126, 180, 212, 1002, 1013, 1089 |
| MboI | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| MfeI | CAATTG | 1 cut(s) | 1056 |
| MhlI | GDGCHC | 1 cut(s) | 844 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 6 cut(s) | 282, 339, 356, 461, 877, 1056 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| MmeI | TCCRAC | 2 cut(s) | 870, 986 |
| MnlI | CCTC | 7 cut(s) | 35, 798, 945, 969, 1028, 1047, 1104 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| Mph1103I | ATGCAT | 2 cut(s) | 569, 573 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 3 cut(s) | 245, 299, 924 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspI | CCGG | 2 cut(s) | 264, 826 |
| MspR9I | CCNGG | 3 cut(s) | 255, 264, 826 |
| MunI | CAATTG | 1 cut(s) | 1056 |
| Mva1269I | GAATGC | 1 cut(s) | 571 |
| MvaI | CCWGG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 285, 351 |
| NciI | CCSGG | 2 cut(s) | 264, 826 |
| NdeII | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| NlaIV | GGNNCC | 3 cut(s) | 46, 252, 391 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| NsiI | ATGCAT | 2 cut(s) | 569, 573 |
| NspI | RCATGY | 3 cut(s) | 567, 571, 588 |
| PaeI | GCATGC | 2 cut(s) | 567, 571 |
| PagI | TCATGA | 1 cut(s) | 831 |
| PciSI | GCTCTTC | 1 cut(s) | 352 |
| PctI | GAATGC | 1 cut(s) | 571 |
| PfeI | GAWTC | 7 cut(s) | 206, 434, 478, 672, 772, 973, 992 |
| PfoI | TCCNGGA | 1 cut(s) | 262 |
| PkrI | GCNGC | 1 cut(s) | 521 |
| PpuMI | RGGWCCY | 1 cut(s) | 44 |
| Psp5II | RGGWCCY | 1 cut(s) | 44 |
| Psp6I | CCWGG | 1 cut(s) | 253 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspGI | CCWGG | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 3 cut(s) | 46, 252, 391 |
| PspPI | GGNCC | 2 cut(s) | 44, 389 |
| PspPPI | RGGWCCY | 1 cut(s) | 44 |
| RsaI | GTAC | 5 cut(s) | 442, 486, 583, 680, 754 |
| RsaNI | GTAC | 5 cut(s) | 441, 485, 582, 679, 753 |
| SapI | GCTCTTC | 1 cut(s) | 352 |
| SaqAI | TTAA | 3 cut(s) | 245, 299, 924 |
| SatI | GCNGC | 1 cut(s) | 520 |
| Sau3AI | GATC | 7 cut(s) | 106, 124, 178, 210, 1000, 1011, 1087 |
| Sau96I | GGNCC | 2 cut(s) | 44, 389 |
| ScrFI | CCNGG | 3 cut(s) | 255, 264, 826 |
| SduI | GDGCHC | 1 cut(s) | 844 |
| SfaNI | GCATC | 2 cut(s) | 919, 1070 |
| SfcI | CTRYAG | 1 cut(s) | 1077 |
| SinI | GGWCC | 1 cut(s) | 44 |
| SmlI | CTYRAG | 3 cut(s) | 884, 1007, 1083 |
| SmoI | CTYRAG | 3 cut(s) | 884, 1007, 1083 |
| SphI | GCATGC | 2 cut(s) | 567, 571 |
| Sse9I | AATT | 6 cut(s) | 282, 339, 356, 461, 877, 1056 |
| SspMI | CTAG | 2 cut(s) | 543, 621 |
| StyD4I | CCNGG | 3 cut(s) | 253, 262, 824 |
| TaaI | ACNGT | 1 cut(s) | 304 |
| TaiI | ACGT | 1 cut(s) | 758 |
| TaqI | TCGA | 5 cut(s) | 209, 498, 1014, 1069, 1090 |
| TasI | AATT | 6 cut(s) | 282, 339, 356, 461, 877, 1056 |
| TatI | WGTACW | 4 cut(s) | 440, 484, 581, 678 |
| TfiI | GAWTC | 7 cut(s) | 206, 434, 478, 672, 772, 973, 992 |
| Tru1I | TTAA | 3 cut(s) | 245, 299, 924 |
| Tru9I | TTAA | 3 cut(s) | 245, 299, 924 |
| TscAI | CASTG | 1 cut(s) | 323 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| TseI | GCWGC | 1 cut(s) | 519 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 8 cut(s) | 17, 45, 306, 570, 762, 820, 848, 984 |
| TspGWI | ACGGA | 2 cut(s) | 263, 685 |
| TspRI | CASTG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 1 cut(s) | 44 |
| XapI | RAATTY | 1 cut(s) | 877 |
| XceI | RCATGY | 3 cut(s) | 567, 571, 588 |
| XspI | CTAG | 2 cut(s) | 543, 621 |
| Zsp2I | ATGCAT | 2 cut(s) | 569, 573 |