Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 993 |
| AciI | CCGC | 3 cut(s) | 520, 577, 997 |
| AclWI | GGATC | 3 cut(s) | 263, 276, 515 |
| AcoI | YGGCCR | 2 cut(s) | 195, 964 |
| AcsI | RAATTY | 2 cut(s) | 22, 97 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 211, 311, 335, 565, 815, 993 |
| AflII | CTTAAG | 1 cut(s) | 683 |
| AgsI | TTSAA | 5 cut(s) | 97, 599, 749, 899, 980 |
| AjnI | CCWGG | 3 cut(s) | 192, 264, 808 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 747, 779 |
| AleI | CACNNNNGTG | 1 cut(s) | 356 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 585, 617 |
| Alw21I | GWGCWC | 1 cut(s) | 638 |
| AlwI | GGATC | 3 cut(s) | 263, 276, 515 |
| AoxI | GGCC | 3 cut(s) | 195, 905, 964 |
| ApeKI | GCWGC | 3 cut(s) | 499, 847, 874 |
| ApoI | RAATTY | 2 cut(s) | 22, 97 |
| AspLEI | GCGC | 1 cut(s) | 775 |
| AspS9I | GGNCC | 5 cut(s) | 106, 190, 726, 806, 905 |
| AsuHPI | GGTGA | 3 cut(s) | 227, 371, 670 |
| AsuII | TTCGAA | 1 cut(s) | 342 |
| AvaII | GGWCC | 4 cut(s) | 106, 190, 726, 806 |
| BaeGI | GKGCMC | 2 cut(s) | 399, 583 |
| BalI | TGGCCA | 2 cut(s) | 197, 966 |
| BamHI | GGATCC | 1 cut(s) | 268 |
| BanII | GRGCYC | 1 cut(s) | 638 |
| Bbv12I | GWGCWC | 1 cut(s) | 638 |
| BbvCI | CCTCAGC | 1 cut(s) | 851 |
| BbvI | GCAGC | 3 cut(s) | 511, 859, 886 |
| BccI | CCATC | 3 cut(s) | 212, 584, 809 |
| BciT130I | CCWGG | 3 cut(s) | 194, 266, 810 |
| BfaI | CTAG | 2 cut(s) | 284, 543 |
| BfmI | CTRYAG | 3 cut(s) | 15, 362, 471 |
| BfrI | CTTAAG | 1 cut(s) | 683 |
| BisI | GCNGC | 3 cut(s) | 500, 848, 875 |
| BlsI | GCNGC | 3 cut(s) | 501, 849, 876 |
| Bme1390I | CCNGG | 3 cut(s) | 194, 266, 810 |
| Bme18I | GGWCC | 4 cut(s) | 106, 190, 726, 806 |
| BmgT120I | GGNCC | 5 cut(s) | 106, 190, 726, 806, 905 |
| BmiI | GGNNCC | 5 cut(s) | 107, 108, 263, 270, 807 |
| BmrFI | CCNGG | 3 cut(s) | 194, 266, 810 |
| BmsI | GCATC | 4 cut(s) | 381, 456, 712, 788 |
| BpmI | CTGGAG | 2 cut(s) | 438, 831 |
| Bpu10I | CCTNAGC | 2 cut(s) | 560, 851 |
| Bpu14I | TTCGAA | 1 cut(s) | 342 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 213, 243, 585, 615, 804, 834 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 211, 311, 335, 565, 815, 993 |
| Bse1I | ACTGG | 1 cut(s) | 890 |
| BseBI | CCWGG | 3 cut(s) | 194, 266, 810 |
| BseGI | GGATG | 2 cut(s) | 325, 438 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 211, 311, 335, 565, 815, 993 |
| BseMII | CTCAG | 3 cut(s) | 243, 453, 842 |
| BseNI | ACTGG | 1 cut(s) | 890 |
| BseSI | GKGCMC | 2 cut(s) | 399, 583 |
| BseXI | GCAGC | 3 cut(s) | 511, 859, 886 |
| BsgI | GTGCAG | 1 cut(s) | 446 |
| BshFI | GGCC | 3 cut(s) | 197, 907, 966 |
| BsiHKAI | GWGCWC | 1 cut(s) | 638 |
| BsiSI | CCGG | 1 cut(s) | 312 |
| BslFI | GGGAC | 3 cut(s) | 92, 187, 286 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 211, 311, 335, 565, 815, 993 |
| BsmFI | GGGAC | 3 cut(s) | 92, 187, 286 |
| BsnI | GGCC | 3 cut(s) | 197, 907, 966 |
| Bsp119I | TTCGAA | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 3 cut(s) | 399, 583, 638 |
| Bsp143I | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| BspACI | CCGC | 3 cut(s) | 520, 577, 997 |
| BspANI | GGCC | 3 cut(s) | 197, 907, 966 |
| BspCNI | CTCAG | 3 cut(s) | 244, 454, 843 |
| BspLI | GGNNCC | 5 cut(s) | 107, 108, 263, 270, 807 |
| BspMAI | CTGCAG | 1 cut(s) | 475 |
| BspPI | GGATC | 3 cut(s) | 263, 276, 515 |
| BspQI | GCTCTTC | 1 cut(s) | 229 |
| BspT104I | TTCGAA | 1 cut(s) | 342 |
| BspTI | CTTAAG | 1 cut(s) | 683 |
| BsrI | ACTGG | 1 cut(s) | 890 |
| BssMI | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| Bst2UI | CCWGG | 3 cut(s) | 194, 266, 810 |
| Bst4CI | ACNGT | 2 cut(s) | 298, 349 |
| Bst6I | CTCTTC | 2 cut(s) | 50, 229 |
| BstAFI | CTTAAG | 1 cut(s) | 683 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstBI | TTCGAA | 1 cut(s) | 342 |
| BstC8I | GCNNGC | 6 cut(s) | 31, 442, 471, 520, 579, 777 |
| BstDEI | CTNAG | 4 cut(s) | 252, 462, 560, 851 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 563 |
| BstF5I | GGATG | 2 cut(s) | 325, 438 |
| BstHHI | GCGC | 1 cut(s) | 775 |
| BstKTI | GATC | 5 cut(s) | 148, 271, 325, 510, 867 |
| BstMBI | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 3 cut(s) | 194, 266, 810 |
| BstNSI | RCATGY | 1 cut(s) | 779 |
| BstSCI | CCNGG | 3 cut(s) | 192, 264, 808 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 362, 471 |
| BstSLI | GKGCMC | 2 cut(s) | 399, 583 |
| BstV1I | GCAGC | 3 cut(s) | 511, 859, 886 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 178, 723 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| BsuRI | GGCC | 3 cut(s) | 197, 907, 966 |
| BtsCI | GGATG | 2 cut(s) | 325, 438 |
| BtsI | GCAGTG | 2 cut(s) | 48, 434 |
| BtsIMutI | CAGTG | 4 cut(s) | 48, 303, 434, 897 |
| Cac8I | GCNNGC | 6 cut(s) | 31, 442, 471, 520, 579, 777 |
| CfoI | GCGC | 1 cut(s) | 775 |
| Cfr13I | GGNCC | 5 cut(s) | 106, 190, 726, 806, 905 |
| CseI | GACGC | 1 cut(s) | 492 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 4 cut(s) | 133, 280, 776, 902 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 4 cut(s) | 252, 462, 560, 851 |
| DpnI | GATC | 5 cut(s) | 147, 270, 324, 509, 866 |
| DpnII | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| EaeI | YGGCCR | 2 cut(s) | 195, 964 |
| Eam1104I | CTCTTC | 2 cut(s) | 50, 229 |
| EarI | CTCTTC | 2 cut(s) | 50, 229 |
| Ecl136II | GAGCTC | 1 cut(s) | 636 |
| Eco24I | GRGCYC | 1 cut(s) | 638 |
| Eco47I | GGWCC | 4 cut(s) | 106, 190, 726, 806 |
| Eco53kI | GAGCTC | 1 cut(s) | 636 |
| EcoICRI | GAGCTC | 1 cut(s) | 636 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 563 |
| EcoO109I | RGGNCCY | 3 cut(s) | 106, 190, 806 |
| EcoRII | CCWGG | 3 cut(s) | 192, 264, 808 |
| EcoT22I | ATGCAT | 1 cut(s) | 781 |
| EcoT38I | GRGCYC | 1 cut(s) | 638 |
| FaeI | CATG | 4 cut(s) | 136, 283, 779, 905 |
| FaqI | GGGAC | 3 cut(s) | 92, 187, 286 |
| FatI | CATG | 4 cut(s) | 132, 279, 775, 901 |
| FauI | CCCGC | 2 cut(s) | 527, 570 |
| FauNDI | CATATG | 1 cut(s) | 355 |
| Fnu4HI | GCNGC | 3 cut(s) | 500, 848, 875 |
| FokI | GGATG | 2 cut(s) | 312, 445 |
| FriOI | GRGCYC | 1 cut(s) | 638 |
| Fsp4HI | GCNGC | 3 cut(s) | 500, 848, 875 |
| FspBI | CTAG | 2 cut(s) | 284, 543 |
| GlaI | GCGC | 1 cut(s) | 774 |
| GluI | GCNGC | 3 cut(s) | 500, 848, 875 |
| GsuI | CTGGAG | 2 cut(s) | 438, 831 |
| HaeIII | GGCC | 3 cut(s) | 197, 907, 966 |
| HapII | CCGG | 1 cut(s) | 312 |
| HgaI | GACGC | 1 cut(s) | 492 |
| HhaI | GCGC | 1 cut(s) | 775 |
| Hin1II | CATG | 4 cut(s) | 136, 283, 779, 905 |
| Hin6I | GCGC | 1 cut(s) | 773 |
| HinP1I | GCGC | 1 cut(s) | 773 |
| HinfI | GANTC | 2 cut(s) | 246, 339 |
| HpaII | CCGG | 1 cut(s) | 312 |
| HphI | GGTGA | 3 cut(s) | 227, 371, 670 |
| Hpy166II | GTNNAC | 2 cut(s) | 457, 739 |
| Hpy188I | TCNGA | 7 cut(s) | 122, 145, 233, 253, 463, 844, 869 |
| Hpy188III | TCNNGA | 2 cut(s) | 184, 320 |
| Hpy8I | GTNNAC | 2 cut(s) | 457, 739 |
| HpyAV | CCTTC | 4 cut(s) | 165, 181, 743, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 298, 349 |
| HpyCH4V | TGCA | 9 cut(s) | 29, 53, 392, 427, 473, 499, 703, 779, 831 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpyF3I | CTNAG | 4 cut(s) | 252, 462, 560, 851 |
| Hsp92II | CATG | 4 cut(s) | 136, 283, 779, 905 |
| HspAI | GCGC | 1 cut(s) | 773 |
| KflI | GGGWCCC | 1 cut(s) | 106 |
| Kzo9I | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| LguI | GCTCTTC | 1 cut(s) | 229 |
| LmnI | GCTCC | 4 cut(s) | 221, 413, 476, 844 |
| Lsp1109I | GCAGC | 3 cut(s) | 511, 859, 886 |
| LweI | GCATC | 4 cut(s) | 381, 456, 712, 788 |
| MaeI | CTAG | 2 cut(s) | 284, 543 |
| MaeIII | GTNAC | 1 cut(s) | 349 |
| MalI | GATC | 5 cut(s) | 147, 270, 324, 509, 866 |
| MboI | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| MboII | GAAGA | 3 cut(s) | 37, 106, 246 |
| MfeI | CAATTG | 1 cut(s) | 408 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MhlI | GDGCHC | 3 cut(s) | 399, 583, 638 |
| MlsI | TGGCCA | 2 cut(s) | 197, 966 |
| MluCI | AATT | 4 cut(s) | 22, 97, 408, 511 |
| MluNI | TGGCCA | 2 cut(s) | 197, 966 |
| MmeI | TCCRAC | 1 cut(s) | 704 |
| MnlI | CCTC | 8 cut(s) | 205, 252, 315, 329, 362, 739, 846, 863 |
| Mox20I | TGGCCA | 2 cut(s) | 197, 966 |
| Mph1103I | ATGCAT | 1 cut(s) | 781 |
| MscI | TGGCCA | 2 cut(s) | 197, 966 |
| MseI | TTAA | 2 cut(s) | 684, 948 |
| MslI | CAYNNNNRTG | 1 cut(s) | 356 |
| Msp20I | TGGCCA | 2 cut(s) | 197, 966 |
| MspA1I | CMGCKG | 1 cut(s) | 850 |
| MspCI | CTTAAG | 1 cut(s) | 683 |
| MspI | CCGG | 1 cut(s) | 312 |
| MspR9I | CCNGG | 3 cut(s) | 194, 266, 810 |
| MunI | CAATTG | 1 cut(s) | 408 |
| MvaI | CCWGG | 3 cut(s) | 194, 266, 810 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NdeI | CATATG | 1 cut(s) | 355 |
| NdeII | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| NlaIII | CATG | 4 cut(s) | 136, 283, 779, 905 |
| NlaIV | GGNNCC | 5 cut(s) | 107, 108, 263, 270, 807 |
| NmuCI | GTSAC | 1 cut(s) | 349 |
| NsiI | ATGCAT | 1 cut(s) | 781 |
| NspI | RCATGY | 1 cut(s) | 779 |
| NspV | TTCGAA | 1 cut(s) | 342 |
| OliI | CACNNNNGTG | 1 cut(s) | 356 |
| PaeI | GCATGC | 1 cut(s) | 779 |
| PciSI | GCTCTTC | 1 cut(s) | 229 |
| PfeI | GAWTC | 2 cut(s) | 246, 339 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 993 |
| PfoI | TCCNGGA | 1 cut(s) | 808 |
| PkrI | GCNGC | 3 cut(s) | 501, 849, 876 |
| PpuMI | RGGWCCY | 3 cut(s) | 106, 190, 806 |
| Psp124BI | GAGCTC | 1 cut(s) | 638 |
| Psp5II | RGGWCCY | 3 cut(s) | 106, 190, 806 |
| Psp6I | CCWGG | 3 cut(s) | 192, 264, 808 |
| PspGI | CCWGG | 3 cut(s) | 192, 264, 808 |
| PspN4I | GGNNCC | 5 cut(s) | 107, 108, 263, 270, 807 |
| PspPI | GGNCC | 5 cut(s) | 106, 190, 726, 806, 905 |
| PspPPI | RGGWCCY | 3 cut(s) | 106, 190, 806 |
| PstI | CTGCAG | 1 cut(s) | 475 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| PvuII | CAGCTG | 1 cut(s) | 850 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 356 |
| SacI | GAGCTC | 1 cut(s) | 638 |
| SapI | GCTCTTC | 1 cut(s) | 229 |
| SaqAI | TTAA | 2 cut(s) | 684, 948 |
| SatI | GCNGC | 3 cut(s) | 500, 848, 875 |
| Sau3AI | GATC | 5 cut(s) | 145, 268, 322, 507, 864 |
| Sau96I | GGNCC | 5 cut(s) | 106, 190, 726, 806, 905 |
| SbfI | CCTGCAGG | 1 cut(s) | 475 |
| ScrFI | CCNGG | 3 cut(s) | 194, 266, 810 |
| SdaI | CCTGCAGG | 1 cut(s) | 475 |
| SduI | GDGCHC | 3 cut(s) | 399, 583, 638 |
| SfaNI | GCATC | 4 cut(s) | 381, 456, 712, 788 |
| SfcI | CTRYAG | 3 cut(s) | 15, 362, 471 |
| SfuI | TTCGAA | 1 cut(s) | 342 |
| SinI | GGWCC | 4 cut(s) | 106, 190, 726, 806 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 356 |
| SmlI | CTYRAG | 1 cut(s) | 683 |
| SmoI | CTYRAG | 1 cut(s) | 683 |
| SphI | GCATGC | 1 cut(s) | 779 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 475 |
| Sse9I | AATT | 4 cut(s) | 22, 97, 408, 511 |
| SsiI | CCGC | 3 cut(s) | 520, 577, 997 |
| SspMI | CTAG | 2 cut(s) | 284, 543 |
| SstI | GAGCTC | 1 cut(s) | 638 |
| StyD4I | CCNGG | 3 cut(s) | 192, 264, 808 |
| TaaI | ACNGT | 2 cut(s) | 298, 349 |
| TaqI | TCGA | 4 cut(s) | 162, 342, 604, 936 |
| TasI | AATT | 4 cut(s) | 22, 97, 408, 511 |
| TfiI | GAWTC | 2 cut(s) | 246, 339 |
| Tru1I | TTAA | 2 cut(s) | 684, 948 |
| Tru9I | TTAA | 2 cut(s) | 684, 948 |
| TscAI | CASTG | 4 cut(s) | 55, 303, 434, 897 |
| TseFI | GTSAC | 1 cut(s) | 349 |
| TseI | GCWGC | 3 cut(s) | 499, 847, 874 |
| Tsp45I | GTSAC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 3 cut(s) | 106, 900, 932 |
| TspGWI | ACGGA | 1 cut(s) | 261 |
| TspRI | CASTG | 4 cut(s) | 55, 303, 434, 897 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 993 |
| Vha464I | CTTAAG | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 4 cut(s) | 106, 190, 726, 806 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 563 |
| XapI | RAATTY | 2 cut(s) | 22, 97 |
| XceI | RCATGY | 1 cut(s) | 779 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 134 |
| XspI | CTAG | 2 cut(s) | 284, 543 |
| Zsp2I | ATGCAT | 1 cut(s) | 781 |