Rorug06G0053900

Hemiasterlin resistant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000322
Physical Location & Seq
Reverse (-)
7451602 .. 7469531
17930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053900.1

Sequence Viewer

Length: 1017 bp
ATGACCCAGACACAGTGCGCTCACTCCTTGGCTTTCATTTCCTGTGACCCCACTGTCGTTCCCAACCCTGACACTCCCTGCAAAAGATGTCAGCATCCAGGACCAAAAGGGAATTGGTTTTGTTTATCCTGTAAGGACATCTTCTGTTGTACTAGTGTGAAGGGACATTTTAGGCAGCATTATCAGGAGACAAAGCATTGTCTTTGTGTCAACTGCAGCACAAAATCAATTTACTGTTGCTCCTGTAGTAAAACTCTAGATGCGCAAGTGATCCAACAATTATGGGTCAAGGGTCGATCCACTTCATCCAAGCTAGAGAGCATTGATGTAATGATTGTTGATGTTATTGATCTCTTGTCTAAACCGTTTCCTAGCATCAATGTTCATCCACAGTTGGATGCTCAGTCATTTGCAGGCCAGGATGAACTTGCATTGGCTAAGGAGGGACTGCAAAAGATCTTTGATAACGGGTTAATAGCTGTAGCTGATCCCAAAGTGCAAGAAAAGTTTCTCCTTTACTCAGCCACACTGCTATCAGCCGAGTCATGCCCCTCAGAATTGAAGGTTAACCTCTCATCATTCAGATGCAATCTTCCGGAGGAAACCTCTGCTTTCACCAAAGCTCAAGATGAGTTGAAGGTGGCTTCAGACTTATCAGCCTCAATCACTCAGAAGAAGTTTGTAGTGCGGCAACAAACTTCAAAGTATGATGAGGTGAAGAAAGAAATTGTTGCCTCGGACGAGAAAGTTTCTAACTTCAAGGCCATGATCAAAGAATTGAAAGCACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACGGAAAAGAGCAACAGAGCAAAGAATGATGAGGCTATTGATTCCATCGAGAAACAAGTCACCACTGCGAGAGATGGGTTGGTCTCGGACTTGGCACAAGTGTCTTCCATGGAAGGATCGACCCAAGCAGCTAACGAGTTAGTAGCTCGAAAACAGTCGGACTGGGATAACTTAAAGCTTAGTTTTACCAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

338

Amino Acids

37.42

Weight (kDa)

7.41

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBP PF02148 27 - 87 1.3e-13 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
Acc16I TGCGCA 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 1 cut(s) 688
AclWI GGATC 4 cut(s) 265, 291, 482, 940
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 5 cut(s) 562, 637, 702, 760, 781
AhlI ACTAGT 1 cut(s) 152
AjnI CCWGG 2 cut(s) 97, 417
AluBI AGCT 8 cut(s) 313, 479, 485, 623, 806, 947, 962, 994
AluI AGCT 8 cut(s) 313, 479, 485, 623, 806, 947, 962, 994
Alw26I GTCTC 2 cut(s) 182, 904
AlwI GGATC 4 cut(s) 265, 291, 482, 940
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 2 cut(s) 415, 762
ApeKI GCWGC 3 cut(s) 175, 216, 944
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 2 cut(s) 20, 265
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 607, 727, 868
AvaII GGWCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 912
BbvI GCAGC 3 cut(s) 187, 228, 956
BccI CCATC 2 cut(s) 869, 884
BciT130I CCWGG 2 cut(s) 99, 419
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 2 cut(s) 182, 904
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 4 cut(s) 153, 257, 314, 372
BfmI CTRYAG 3 cut(s) 214, 244, 480
BglII AGATCT 1 cut(s) 456
BisI GCNGC 4 cut(s) 176, 217, 689, 945
BlsI GCNGC 4 cut(s) 177, 218, 690, 946
Bme1390I CCNGG 2 cut(s) 99, 419
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 99, 419
BmrI ACTGGG 1 cut(s) 988
BmsI GCATC 5 cut(s) 103, 250, 384, 388, 575
BmuI ACTGGG 1 cut(s) 988
BpiI GAAGAC 1 cut(s) 912
BplI GAGNNNNNCTC 2 cut(s) 590, 622
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 904
BsaJI CCNNGG 4 cut(s) 27, 735, 816, 924
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 1 cut(s) 983
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 2 cut(s) 99, 419
BseDI CCNNGG 4 cut(s) 27, 735, 816, 924
BseGI GGATG 5 cut(s) 94, 305, 385, 403, 427
BseMII CTCAG 4 cut(s) 416, 534, 567, 683
BseNI ACTGG 1 cut(s) 983
BseXI GCAGC 3 cut(s) 187, 228, 956
BshFI GGCC 2 cut(s) 417, 764
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 2 cut(s) 177, 459
BsmAI GTCTC 2 cut(s) 182, 904
BsmFI GGGAC 2 cut(s) 177, 459
BsnI GGCC 2 cut(s) 417, 764
Bso31I GGTCTC 1 cut(s) 904
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 1 cut(s) 688
BspANI GGCC 2 cut(s) 417, 764
BspCNI CTCAG 4 cut(s) 415, 533, 566, 682
BspEI TCCGGA 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 4 cut(s) 265, 291, 482, 940
BspTNI GGTCTC 1 cut(s) 904
BsrI ACTGG 1 cut(s) 983
BssECI CCNNGG 4 cut(s) 27, 735, 816, 924
BssMI GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
BssT1I CCWWGG 2 cut(s) 27, 924
Bst2UI CCWGG 2 cut(s) 99, 419
Bst4CI ACNGT 6 cut(s) 15, 55, 236, 366, 393, 972
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 6 cut(s) 402, 438, 520, 553, 669, 995
BstDSI CCRYGG 2 cut(s) 816, 924
BstF5I GGATG 5 cut(s) 94, 305, 385, 403, 427
BstHHI GCGC 2 cut(s) 20, 265
BstKTI GATC 7 cut(s) 273, 299, 352, 459, 490, 771, 935
BstMAI GTCTC 2 cut(s) 182, 904
BstMBI GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 2 cut(s) 99, 419
BstSCI CCNGG 2 cut(s) 97, 417
BstSFI CTRYAG 3 cut(s) 214, 244, 480
BstV1I GCAGC 3 cut(s) 187, 228, 956
BstV2I GAAGAC 1 cut(s) 912
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 2 cut(s) 417, 764
BtgI CCRYGG 2 cut(s) 816, 924
BtsCI GGATG 5 cut(s) 94, 305, 385, 403, 427
BtsI GCAGTG 2 cut(s) 527, 879
BtsIMutI CAGTG 4 cut(s) 20, 51, 527, 879
Cac8I GCNNGC 1 cut(s) 415
CfoI GCGC 2 cut(s) 20, 265
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 150
CviAII CATG 4 cut(s) 546, 766, 925, 1014
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 6 cut(s) 402, 438, 520, 553, 669, 995
DpnI GATC 7 cut(s) 272, 298, 351, 458, 489, 770, 934
DpnII GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 27, 924
Eco31I GGTCTC 1 cut(s) 904
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 97, 417
EcoT14I CCWWGG 2 cut(s) 27, 924
ErhI CCWWGG 2 cut(s) 27, 924
FaeI CATG 4 cut(s) 549, 769, 928, 1017
FaiI YATR 6 cut(s) 283, 547, 708, 767, 926, 1015
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 2 cut(s) 177, 459
FatI CATG 4 cut(s) 545, 765, 924, 1013
FbaI TGATCA 1 cut(s) 768
Fnu4HI GCNGC 4 cut(s) 176, 217, 689, 945
FokI GGATG 5 cut(s) 81, 292, 372, 410, 434
Fsp4HI GCNGC 4 cut(s) 176, 217, 689, 945
FspBI CTAG 4 cut(s) 153, 257, 314, 372
FspI TGCGCA 1 cut(s) 264
GlaI GCGC 2 cut(s) 19, 264
GluI GCNGC 4 cut(s) 176, 217, 689, 945
HaeIII GGCC 2 cut(s) 417, 764
HapII CCGG 1 cut(s) 596
HhaI GCGC 2 cut(s) 20, 265
Hin1II CATG 4 cut(s) 549, 769, 928, 1017
Hin6I GCGC 2 cut(s) 18, 263
HinP1I GCGC 2 cut(s) 18, 263
HincII GTYRAC 2 cut(s) 211, 568
HindII GTYRAC 2 cut(s) 211, 568
HindIII AAGCTT 2 cut(s) 804, 992
HinfI GANTC 2 cut(s) 542, 857
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 1 cut(s) 596
HphI GGTGA 3 cut(s) 607, 727, 868
Hpy166II GTNNAC 2 cut(s) 211, 568
Hpy188I TCNGA 7 cut(s) 556, 584, 649, 672, 739, 904, 976
Hpy188III TCNNGA 5 cut(s) 185, 257, 596, 626, 865
Hpy8I GTNNAC 2 cut(s) 211, 568
HpyAV CCTTC 4 cut(s) 154, 556, 631, 923
HpyCH4III ACNGT 6 cut(s) 15, 55, 236, 366, 393, 972
HpyCH4V TGCA 8 cut(s) 81, 216, 413, 431, 451, 499, 588, 1013
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 6 cut(s) 402, 438, 520, 553, 669, 995
Hsp92II CATG 4 cut(s) 549, 769, 928, 1017
HspAI GCGC 2 cut(s) 18, 263
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 768
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 3 cut(s) 187, 228, 956
LweI GCATC 5 cut(s) 103, 250, 384, 388, 575
MaeI CTAG 4 cut(s) 153, 257, 314, 372
MaeIII GTNAC 2 cut(s) 44, 874
MalI GATC 7 cut(s) 272, 298, 351, 458, 489, 770, 934
MboI GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
MboII GAAGA 5 cut(s) 133, 584, 685, 730, 912
MflI RGATCY 1 cut(s) 456
MluCI AATT 6 cut(s) 112, 228, 278, 557, 726, 776
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 4 cut(s) 298, 375, 780, 954
MnlI CCTC 9 cut(s) 436, 562, 581, 592, 616, 670, 706, 745, 841
MroI TCCGGA 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 3 cut(s) 473, 567, 989
MslI CAYNNNNRTG 1 cut(s) 583
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 2 cut(s) 99, 419
MvaI CCWGG 2 cut(s) 99, 419
MwoI GCNNNNNNNGC 1 cut(s) 812
NcoI CCATGG 1 cut(s) 924
NdeII GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
NlaIII CATG 4 cut(s) 549, 769, 928, 1017
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 2 cut(s) 44, 874
NsbI TGCGCA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 857
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 4 cut(s) 177, 218, 690, 946
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 97, 417
PspGI CCWGG 2 cut(s) 97, 417
PspPI GGNCC 1 cut(s) 101
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 583
SaqAI TTAA 3 cut(s) 473, 567, 989
SatI GCNGC 4 cut(s) 176, 217, 689, 945
Sau3AI GATC 7 cut(s) 270, 296, 349, 456, 487, 768, 932
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 99, 419
SfaNI GCATC 5 cut(s) 103, 250, 384, 388, 575
SfcI CTRYAG 3 cut(s) 214, 244, 480
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 6 cut(s) 112, 228, 278, 557, 726, 776
SsiI CCGC 1 cut(s) 688
SspMI CTAG 4 cut(s) 153, 257, 314, 372
StyD4I CCNGG 2 cut(s) 97, 417
StyI CCWWGG 2 cut(s) 27, 924
TaaI ACNGT 6 cut(s) 15, 55, 236, 366, 393, 972
TaqI TCGA 4 cut(s) 295, 864, 935, 964
TasI AATT 6 cut(s) 112, 228, 278, 557, 726, 776
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 691
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 3 cut(s) 473, 567, 989
Tru9I TTAA 3 cut(s) 473, 567, 989
TscAI CASTG 4 cut(s) 20, 58, 534, 886
TseFI GTSAC 2 cut(s) 44, 874
TseI GCWGC 3 cut(s) 175, 216, 944
Tsp45I GTSAC 2 cut(s) 44, 874
TspDTI ATGAA 4 cut(s) 25, 294, 374, 438
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 4 cut(s) 20, 58, 534, 886
VpaK11BI GGWCC 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 4 cut(s) 153, 257, 314, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.