Rorug04G0142900

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000122
Physical Location & Seq
Forward (+)
23806797 .. 23822485
15689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0142900.1

Sequence Viewer

Length: 3444 bp
ATGAGAGCGGCGGCGTCTCTCCTTGTCAAATCAGTAGCCTCCTCCAACAATACTTGTTTTCGTTCTCGCCGCCTCAAATTCTGTCTTGTTGTACTCCAATCACACTCTTCCTCTTCCTCTTCCTCTTCTCCCATTTCGATTTCGAAGCGCGGCTTTTCCGGCTACGCTGCGGAGCAGTTCTCCGACGACGAGTATGAGTGCGATTTCGAAAGCCAAAAGGCTTCATCTTCCGTGGCCAACATTGACGAGTGGAAATGGAAACTGAGCCTGCTGCTGCGCAGTGACAAGGACCAAGAGATTGTTTCCAGAGATAAAAGGGATAGGAGAGACTATGAGCAAATATCTAACCTCGCCAAACGGATGGGACTTTACACTGAAATCTATGGCAAAGTGGTGGTTGCCAGCAAGGTTCCTCTTCCAAACTACCGCCCCGATTTGGATGATAAGCGCCCACAAAGAGAGGTGGTTATCCCTCTTGGCTTGCAAAGGAGGGTGGAGGGTTTACTGCAAGAACACCTTGATCGTGTCCTGCTAAGTTCCCGCAACGTATCAGCCAATTCAGGTGGTGACAGTGAGCACTTCGATCAGGTTGAAAATGAAAAGCCTGATGCGAATGCAGATTCTTTTCTTGATGGGTCTGTAATGGAGAAGGTTCTTCAGCGTAGGAGTTTGCGCATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCTGAAGGTAAAAAGATGCTAGAGTTCCGGAAATCACTACCATCTTTCAAAGAGAATCAGAGGTTGCTGCAAGCAATAGCACAAAATCAGGTAGTAGTGATATCTGGGGAGACTGGATGTGGTAAGACCACTCAGCTTCCTCAATATATACTAGAGTCAGCGATAGAATCTGGCCGTGGAGCATTCTGTAGCATTATCTGTACACAACCTCGAAGAATATCTGCTATGGCTGTTGCTGAAAGAGTGTCTGCAGAGAGGGGAGAGCCTCTTGGTGAAACAGTGGGCTATAAAGTTCGATTAGAGGGAATGAAAGGAAAAAATACGCATCTCCTTTTCTGTACCAGTGGTATTCTACTTCGCCGTCTGTTGAGTGATCGGAACTTGAGTGGTGTAACACATGTTTTTGTTGATGAAATTCATGAACGAGGCATGAATGAAGACTTCTTGTTGATTGTATTGAAAGATCTGCTTCCACGCCGTCGGGATCTAAGATTGGTTTTGATGAGTGCCACTCTGAATGCGGAGCTATTTTCAAATTTTTTTGGAGGAGCACCAACAATTCACATTCCGGGTTTCACATATCCAGTGAGAGCACACTTTTTGGAAGATGTACTGGAAATGACTGGGTATAAGCTGACTTCTTTCAACCAAATTGATGACTATGGCCAAGACAAACTGTGGAAAACGCAGAAGCAGTTAGCGCCTCGGAAAAGGAAAAACCAGATCACTGCTCTAGTTGAGGATGCTCTTACTAAATCAAGTTTTGAGAATTATAGCCCCAGAGCACGTGATTCATTATCATGTTGGACGGCTGATTGCATAGGATTTAATCTTATTGAAGCAGTTTTATGTCATATATGTCGGAAGGAACGGCCAGGTGCTGTCTTAGTATTCATGACTGGGTGGGAGGATATCAGCTGTTTGAGGGATCAACTTAAAGCCCATCCTCTTTTAGGTGATCCTAACAGGGTTTTGCTTATAACATGCCATGGGTCAATGACCACGTCTGAACAGAACCTCATTTTCGTGAGACCGCCTCCTAATGTACGTAAAATTGTTCTTGCTACTAATATGGCAGAAGCAAGCATTACAATCAATGATGTAGTTTTTGTGGTGGATTGTGGAAAAGCAAAAGAGACCACATATGATGCTTTGAATAATACACCTTGTCTACTACCTTCTTGGATATCCCAAGCATCTGCTCGGCAAAGAAGGGGAAGGGCTGGCCGGGTGCAGCCAGGCGAATGTTACCACCTTTACCCCAAATGTGTGTATCATGCGTTTGCAGAATACCAACTTCCTGAACTTCTAAGGACTCCTTTGAATTCTCTCTGCTTGCAAATCAAAAGTTTGCAGGTTGGTAGTATAGGAGAATTCTTGTCAGCTGCCCTGCAACCACCTGAACCCCTTGCTGTTCAAAATGCTGTTGGCTTTCTTAAGTTGATTGGGGCATTGGATGAGAATGAAAATTTGACAAATCTCGGAAAATATTTGTCAATGCTTCCAGTAGATCCCAAACTAGGGAAAATGCTGATTATGGGTGCTGTATTTCATTGCTTTGATCCTGTTCTTACAATAGTGTCTGGGCTAAGTGTCCGGGATCCATTCCTTTTGCCTCAAGACAAAAAAGATTTAGCGGGGACAGCAAAATCTAGATTCTCTGCAAAAGATTATAGTGATCATATGGCTCTTGTTCGTGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCAGCGTATGAATACTGCTGGAGAAATTTTCTCTCTGCCCAGACACTTCAAGCTATTCATTCTCTTCGGAAGCAGTTTAGCTACATCTTAAGAGACGCTGGCTTGGTGGATGCAGATGCAAGCATTAACAACAAGCTAAGTCACAATCAGTCATTGGTCCGCGCAATCATATGTTCCGGACTATTCCCTGGCATAGCATCTGTAGTGCACCGAGAGACATCCATGTCTTTCAAAACTATGGATGATGGCCAGGTTTTACTATATGCTAATTCTGTAAATGCACGTTACCAAACAATTCCCTACCCTTGGCTGGTCTTTGGTGAAAAAGTAAAGGTCAACACAGTTTTCATACGCGATTCTACTGGTGTCTCTGATTCCATTTTGATCCTTTTTGGTGGTGCCCTAAACCATGGTATCCAGGCTGGGCATTTGAAAATGTTGGACGGCTATATTGACTTCTTCATGGATCCTAGTTTGATGGACTGCTATTTGAAGCTTAAAGAAGAGCTTAATGAGCTTATTCAGAAGAAGCTTCAAGATCCAAGCCTCGATATCCACAAGGAAGGAAAGTATCTCATACTTGCTGTTCAAGAGCTGGTATCTGGAGATCAAAGTGAAGGAAGATTTGTGTTTGGCCGTGAAAACAGGAAGCCAAAGGAGTCTGGTGATAACAGCAGATTCACAAGGGATGGAACCAATCCTAAGAGTTTGCTACAAACTCTATTGATGAGAGCAGGACATTCACCTCCAAAATACAAAACCAAGCACCTCAAGACAAATGAGTTCAGAGCACTTGTGGAGTTCAAGGGCATGCAATTTGTTGGGAAGCCCAAGAAAAATAAGCAGCTTGCCGAAAGGGATGCTGCCATAGAAGCACTGGCCTGGTTGACTCACACCTCAGACAACAGTCGTGATGAAGATGATAACTCCCCACCTGATGTCACTAACAACATGCTGAAACTTCTGGGGAAACGTAGAAGATCAAAGCGCCACTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

1147

Amino Acids

128.95

Weight (kDa)

8.92

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 257 - 411 7.6e-10 DEAD/DEAH box helicase
Helicase_C PF00271 518 - 647 1.5e-10 Helicase conserved C-terminal domain
WHD_HA2 PF04408 711 - 739 2.8e-07 Helicase associated domain (HA2), winged-helix
HA2_C PF21010 740 - 800 5.9e-15 Helicase associated domain (HA2), ratchet-like
OB_NTP_bind PF07717 867 - 948 5.4e-17 Oligonucleotide/oligosaccharide-binding (OB)-fold
RNA_hel_CTD PF26026 957 - 1015 2.6e-23 C-terminal domain in RNA helicases
dsrm PF00035 1048 - 1110 7.7e-07 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1688
AasI GACNNNNNNGTC 1 cut(s) 2665
Acc16I TGCGCA 2 cut(s) 278, 674
Acc36I ACCTGC 1 cut(s) 2053
AccB1I GGYRCC 1 cut(s) 2840
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 1879
AccII CGCG 3 cut(s) 150, 2604, 2796
AccIII TCCGGA 2 cut(s) 735, 2618
AcoI YGGCCR 7 cut(s) 234, 880, 1372, 1580, 1933, 2689, 3076
AcsI RAATTY 7 cut(s) 77, 1122, 1243, 2032, 2081, 2176, 2467
AcuI CTGAAG 2 cut(s) 641, 732
AcvI CACGTG 1 cut(s) 1496
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 5 cut(s) 93, 910, 1048, 1320, 1755
AfiI CCNNNNNNNGG 6 cut(s) 436, 1661, 2228, 2229, 2748, 2752
AflII CTTAAG 2 cut(s) 2144, 2530
AflIII ACRYGT 1 cut(s) 1105
AjiI CACGTC 1 cut(s) 1713
AjnI CCWGG 6 cut(s) 1582, 1945, 2629, 2691, 2859, 3323
Alw21I GWGCWC 6 cut(s) 579, 1261, 1303, 1495, 2652, 3235
Alw26I GTCTC 8 cut(s) 21, 321, 812, 1732, 1838, 2529, 2651, 2815
Alw44I GTGCAC 1 cut(s) 2648
AlwNI CAGNNNCTG 1 cut(s) 1589
Aor13HI TCCGGA 2 cut(s) 735, 2618
AoxI GGCC 8 cut(s) 234, 880, 1372, 1580, 1933, 2689, 3076, 3321
ApaLI GTGCAC 1 cut(s) 2648
ApeKI GCWGC 8 cut(s) 167, 271, 274, 775, 1942, 2093, 3286, 3305
ApoI RAATTY 7 cut(s) 77, 1122, 1243, 2032, 2081, 2176, 2467
AspLEI GCGC 7 cut(s) 150, 279, 450, 675, 1411, 2606, 3432
AspS9I GGNCC 2 cut(s) 289, 2599
AsuC2I CCSGG 3 cut(s) 1278, 1937, 2306
AsuHPI GGTGA 7 cut(s) 578, 699, 992, 1676, 2774, 3119, 3177
AsuII TTCGAA 2 cut(s) 143, 207
AvaII GGWCC 2 cut(s) 289, 2599
BaeGI GKGCMC 2 cut(s) 2652, 2845
BaeI ACNNNNGTAYC 2 cut(s) 2839, 2872
BalI TGGCCA 3 cut(s) 236, 1374, 2691
BamHI GGATCC 2 cut(s) 2308, 2908
BanI GGYRCC 1 cut(s) 2840
BbrPI CACGTG 1 cut(s) 1496
BbsI GAAGAC 1 cut(s) 1152
Bbv12I GWGCWC 6 cut(s) 579, 1261, 1303, 1495, 2652, 3235
BbvI GCAGC 8 cut(s) 154, 258, 261, 762, 1954, 2080, 3292, 3298
BccI CCATC 8 cut(s) 355, 626, 757, 1659, 2412, 2681, 2914, 3125
BceAI ACGGC 7 cut(s) 867, 1053, 1170, 1533, 1595, 2902, 3063
BcgI CGANNNNNNTGC 2 cut(s) 3284, 3318
BciT130I CCWGG 6 cut(s) 1584, 1947, 2631, 2693, 2861, 3325
BciVI GTATCC 1 cut(s) 2867
BclI TGATCA 1 cut(s) 2386
BcnI CCSGG 3 cut(s) 1278, 1937, 2306
BcoDI GTCTC 8 cut(s) 21, 321, 812, 1732, 1838, 2529, 2651, 2815
BfaI CTAG 6 cut(s) 728, 860, 1442, 2228, 2361, 2913
BfmI CTRYAG 3 cut(s) 895, 957, 2643
BfoI RGCGCY 3 cut(s) 451, 1412, 3433
BfrI CTTAAG 2 cut(s) 2144, 2530
BfuAI ACCTGC 1 cut(s) 2053
BfuI GTATCC 1 cut(s) 2867
BglII AGATCT 1 cut(s) 1171
Bme1390I CCNGG 9 cut(s) 1278, 1584, 1937, 1947, 2306, 2631, 2693, 2861, 3325
Bme18I GGWCC 2 cut(s) 289, 2599
BmgBI CACGTC 1 cut(s) 1713
BmgT120I GGNCC 2 cut(s) 289, 2599
BmiI GGNNCC 5 cut(s) 411, 2310, 2842, 2910, 3136
BmrFI CCNGG 9 cut(s) 1278, 1584, 1937, 1947, 2306, 2631, 2693, 2861, 3325
BmrI ACTGGG 2 cut(s) 1341, 1617
BmuI ACTGGG 2 cut(s) 1341, 1617
BoxI GACNNNNGTC 1 cut(s) 3348
BpiI GAAGAC 1 cut(s) 1152
BplI GAGNNNNNCTC 6 cut(s) 164, 196, 1204, 1236, 1729, 1761
BpmI CTGGAG 2 cut(s) 2482, 3066
Bpu14I TTCGAA 2 cut(s) 143, 207
BpuEI CTTGAG 3 cut(s) 1111, 2310, 3197
BpuMI CCSGG 3 cut(s) 1278, 1937, 2306
BsaAI YACGTR 2 cut(s) 1496, 1757
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 2 cut(s) 1732, 1838
BsaJI CCNNGG 7 cut(s) 231, 883, 1412, 1696, 2629, 2747, 2851
BsaWI WCCGGW 2 cut(s) 735, 2618
Bsc4I CCNNNNNNNGG 6 cut(s) 436, 1661, 2228, 2229, 2748, 2752
Bse1I ACTGG 9 cut(s) 826, 1050, 1292, 1326, 1336, 1612, 2213, 2809, 3324
Bse3DI GCAATG 1 cut(s) 2260
BseAI TCCGGA 2 cut(s) 735, 2618
BseBI CCWGG 6 cut(s) 1584, 1947, 2631, 2693, 2861, 3325
BseDI CCNNGG 7 cut(s) 231, 883, 1412, 1696, 2629, 2747, 2851
BseLI CCNNNNNNNGG 6 cut(s) 436, 1661, 2228, 2229, 2748, 2752
BseMI GCAATG 1 cut(s) 2260
BseMII CTCAG 3 cut(s) 254, 854, 3354
BseNI ACTGG 9 cut(s) 826, 1050, 1292, 1326, 1336, 1612, 2213, 2809, 3324
BseRI GAGGAG 2 cut(s) 31, 1269
BseSI GKGCMC 2 cut(s) 2652, 2845
BseXI GCAGC 8 cut(s) 154, 258, 261, 762, 1954, 2080, 3292, 3298
BseYI CCCAGC 1 cut(s) 2864
BsgI GTGCAG 1 cut(s) 1961
Bsh1236I CGCG 3 cut(s) 150, 2604, 2796
BshFI GGCC 8 cut(s) 236, 882, 1374, 1582, 1935, 2691, 3078, 3323
BshNI GGYRCC 1 cut(s) 2840
BsiHKAI GWGCWC 6 cut(s) 579, 1261, 1303, 1495, 2652, 3235
BsiSI CCGG 6 cut(s) 159, 736, 1277, 1936, 2305, 2619
BslFI GGGAC 2 cut(s) 378, 2362
BslI CCNNNNNNNGG 6 cut(s) 436, 1661, 2228, 2229, 2748, 2752
BsmAI GTCTC 8 cut(s) 21, 321, 812, 1732, 1838, 2529, 2651, 2815
BsmBI CGTCTC 2 cut(s) 21, 2529
BsmFI GGGAC 2 cut(s) 378, 2362
BsmI GAATGC 3 cut(s) 619, 890, 1231
BsnI GGCC 8 cut(s) 236, 882, 1374, 1582, 1935, 2691, 3078, 3323
Bso31I GGTCTC 2 cut(s) 1732, 1838
Bsp119I TTCGAA 2 cut(s) 143, 207
Bsp1286I GDGCHC 7 cut(s) 579, 1261, 1303, 1495, 2652, 2845, 3235
Bsp13I TCCGGA 2 cut(s) 735, 2618
Bsp1407I TGTACA 1 cut(s) 908
Bsp19I CCATGG 2 cut(s) 1696, 2851
BspANI GGCC 8 cut(s) 236, 882, 1374, 1582, 1935, 2691, 3078, 3323
BspCNI CTCAG 3 cut(s) 255, 853, 3353
BspEI TCCGGA 2 cut(s) 735, 2618
BspFNI CGCG 3 cut(s) 150, 2604, 2796
BspHI TCATGA 2 cut(s) 1126, 1602
BspLI GGNNCC 5 cut(s) 411, 2310, 2842, 2910, 3136
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 2053
BspQI GCTCTTC 1 cut(s) 2940
BspT104I TTCGAA 2 cut(s) 143, 207
BspT107I GGYRCC 1 cut(s) 2840
BspTI CTTAAG 2 cut(s) 2144, 2530
BspTNI GGTCTC 2 cut(s) 1732, 1838
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 2260
BsrGI TGTACA 1 cut(s) 908
BsrI ACTGG 9 cut(s) 826, 1050, 1292, 1326, 1336, 1612, 2213, 2809, 3324
BssECI CCNNGG 7 cut(s) 231, 883, 1412, 1696, 2629, 2747, 2851
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 3 cut(s) 1696, 2747, 2851
Bst2UI CCWGG 6 cut(s) 1584, 1947, 2631, 2693, 2861, 3325
Bst4CI ACNGT 5 cut(s) 572, 988, 1386, 2785, 3350
Bst6I CTCTTC 7 cut(s) 112, 118, 124, 130, 420, 2511, 2940
BstACI GRCGYC 1 cut(s) 14
BstAFI CTTAAG 2 cut(s) 2144, 2530
BstAUI TGTACA 1 cut(s) 908
BstBAI YACGTR 2 cut(s) 1496, 1757
BstBI TTCGAA 2 cut(s) 143, 207
BstDSI CCRYGG 4 cut(s) 231, 883, 1696, 2851
BstENI CCTNNNNNAGG 1 cut(s) 1659
BstFNI CGCG 3 cut(s) 150, 2604, 2796
BstH2I RGCGCY 3 cut(s) 451, 1412, 3433
BstHHI GCGC 7 cut(s) 150, 279, 450, 675, 1411, 2606, 3432
BstMAI GTCTC 8 cut(s) 21, 321, 812, 1732, 1838, 2529, 2651, 2815
BstMWI GCNNNNNNNGC 6 cut(s) 159, 685, 1408, 2351, 2956, 3314
BstNI CCWGG 6 cut(s) 1584, 1947, 2631, 2693, 2861, 3325
BstNSI RCATGY 5 cut(s) 679, 1109, 1695, 3256, 3397
BstPAI GACNNNNGTC 1 cut(s) 3348
BstSCI CCNGG 9 cut(s) 1276, 1582, 1935, 1945, 2304, 2629, 2691, 2859, 3323
BstSFI CTRYAG 3 cut(s) 895, 957, 2643
BstSLI GKGCMC 2 cut(s) 2652, 2845
BstSNI TACGTA 1 cut(s) 1757
BstUI CGCG 3 cut(s) 150, 2604, 2796
BstV1I GCAGC 8 cut(s) 154, 258, 261, 762, 1954, 2080, 3292, 3298
BstV2I GAAGAC 1 cut(s) 1152
BstX2I RGATCY 6 cut(s) 1171, 1192, 2218, 2308, 2908, 2980
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 6 cut(s) 1171, 1192, 2218, 2308, 2908, 2980
BsuI GTATCC 1 cut(s) 2867
BsuRI GGCC 8 cut(s) 236, 882, 1374, 1582, 1935, 2691, 3078, 3323
BtgI CCRYGG 4 cut(s) 231, 883, 1696, 2851
BtrI CACGTC 1 cut(s) 1713
BtsI GCAGTG 2 cut(s) 286, 1434
BtsIMutI CAGTG 8 cut(s) 286, 372, 577, 993, 1057, 1299, 1434, 3317
BveI ACCTGC 1 cut(s) 2053
CaiI CAGNNNCTG 1 cut(s) 1589
CciI TCATGA 2 cut(s) 1126, 1602
CfoI GCGC 7 cut(s) 150, 279, 450, 675, 1411, 2606, 3432
Cfr13I GGNCC 2 cut(s) 289, 2599
CseI GACGC 2 cut(s) 3, 2546
Csp6I GTAC 5 cut(s) 92, 909, 1047, 1319, 1754
CspCI CAANNNNNGTGG 2 cut(s) 544, 579
CviQI GTAC 5 cut(s) 92, 909, 1047, 1319, 1754
DrdI GACNNNNNNGTC 1 cut(s) 2665
DseDI GACNNNNNNGTC 1 cut(s) 2665
EaeI YGGCCR 7 cut(s) 234, 880, 1372, 1580, 1933, 2689, 3076
Eam1104I CTCTTC 7 cut(s) 112, 118, 124, 130, 420, 2511, 2940
EarI CTCTTC 7 cut(s) 112, 118, 124, 130, 420, 2511, 2940
Eco105I TACGTA 1 cut(s) 1757
Eco130I CCWWGG 3 cut(s) 1696, 2747, 2851
Eco31I GGTCTC 2 cut(s) 1732, 1838
Eco32I GATATC 4 cut(s) 810, 1621, 1896, 2995
Eco47I GGWCC 2 cut(s) 289, 2599
Eco57I CTGAAG 2 cut(s) 641, 732
Eco72I CACGTG 1 cut(s) 1496
EcoNI CCTNNNNNAGG 1 cut(s) 1659
EcoRI GAATTC 2 cut(s) 2032, 2081
EcoRII CCWGG 6 cut(s) 1582, 1945, 2629, 2691, 2859, 3323
EcoRV GATATC 4 cut(s) 810, 1621, 1896, 2995
EcoT14I CCWWGG 3 cut(s) 1696, 2747, 2851
ErhI CCWWGG 3 cut(s) 1696, 2747, 2851
Esp3I CGTCTC 2 cut(s) 21, 2529
FaqI GGGAC 2 cut(s) 378, 2362
FauI CCCGC 2 cut(s) 548, 2338
FauNDI CATATG 4 cut(s) 1852, 2391, 2410, 2612
FbaI TGATCA 1 cut(s) 2386
FblI GTMKAC 1 cut(s) 1879
FspBI CTAG 6 cut(s) 728, 860, 1442, 2228, 2361, 2913
FspI TGCGCA 2 cut(s) 278, 674
GlaI GCGC 7 cut(s) 149, 278, 449, 674, 1410, 2605, 3431
GsaI CCCAGC 1 cut(s) 2868
GsuI CTGGAG 2 cut(s) 2482, 3066
HaeII RGCGCY 3 cut(s) 451, 1412, 3433
HaeIII GGCC 8 cut(s) 236, 882, 1374, 1582, 1935, 2691, 3078, 3323
HapII CCGG 6 cut(s) 159, 736, 1277, 1936, 2305, 2619
HgaI GACGC 2 cut(s) 3, 2546
HhaI GCGC 7 cut(s) 150, 279, 450, 675, 1411, 2606, 3432
Hin1I GRCGYC 1 cut(s) 14
Hin6I GCGC 7 cut(s) 148, 277, 448, 673, 1409, 2604, 3430
HinP1I GCGC 7 cut(s) 148, 277, 448, 673, 1409, 2604, 3430
HincII GTYRAC 2 cut(s) 2779, 3330
HindII GTYRAC 2 cut(s) 2779, 3330
HindIII AAGCTT 2 cut(s) 2936, 2972
HpaII CCGG 6 cut(s) 159, 736, 1277, 1936, 2305, 2619
HphI GGTGA 7 cut(s) 578, 699, 992, 1676, 2774, 3119, 3177
Hpy166II GTNNAC 6 cut(s) 503, 911, 1880, 2650, 2779, 3330
Hpy8I GTNNAC 6 cut(s) 503, 911, 1880, 2650, 2779, 3330
Hpy99I CGWCG 3 cut(s) 188, 191, 1191
HpyCH4III ACNGT 5 cut(s) 572, 988, 1386, 2785, 3350
HpyCH4IV ACGT 6 cut(s) 546, 1495, 1712, 1756, 2725, 3415
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 685, 1408, 2351, 2956, 3314
HpySE526I ACGT 6 cut(s) 546, 1495, 1712, 1756, 2725, 3415
Hsp92I GRCGYC 1 cut(s) 14
HspAI GCGC 7 cut(s) 148, 277, 448, 673, 1409, 2604, 3430
Kpn2I TCCGGA 2 cut(s) 735, 2618
Ksp22I TGATCA 1 cut(s) 2386
LguI GCTCTTC 1 cut(s) 2940
LmnI GCTCC 4 cut(s) 172, 887, 1231, 1256
Lsp1109I GCAGC 8 cut(s) 154, 258, 261, 762, 1954, 2080, 3292, 3298
MaeI CTAG 6 cut(s) 728, 860, 1442, 2228, 2361, 2913
MaeII ACGT 6 cut(s) 546, 1495, 1712, 1756, 2725, 3415
MaeIII GTNAC 7 cut(s) 281, 566, 1099, 1955, 2582, 2726, 3382
MbiI CCGCTC 1 cut(s) 8
MflI RGATCY 6 cut(s) 1171, 1192, 2218, 2308, 2908, 2980
MhlI GDGCHC 7 cut(s) 579, 1261, 1303, 1495, 2652, 2845, 3235
MlsI TGGCCA 3 cut(s) 236, 1374, 2691
MluNI TGGCCA 3 cut(s) 236, 1374, 2691
MlyI GAGTC 4 cut(s) 872, 2017, 3110, 3325
MmeI TCCRAC 5 cut(s) 69, 207, 1493, 1550, 2862
Mox20I TGGCCA 3 cut(s) 236, 1374, 2691
MroI TCCGGA 2 cut(s) 735, 2618
MscI TGGCCA 3 cut(s) 236, 1374, 2691
MseI TTAA 8 cut(s) 1536, 1644, 2145, 2531, 2568, 2940, 2952, 3442
MslI CAYNNNNRTG 2 cut(s) 1507, 1733
Msp20I TGGCCA 3 cut(s) 236, 1374, 2691
MspA1I CMGCKG 2 cut(s) 1626, 2093
MspCI CTTAAG 2 cut(s) 2144, 2530
MspI CCGG 6 cut(s) 159, 736, 1277, 1936, 2305, 2619
MspR9I CCNGG 9 cut(s) 1278, 1584, 1937, 1947, 2306, 2631, 2693, 2861, 3325
Mva1269I GAATGC 3 cut(s) 619, 890, 1231
MvaI CCWGG 6 cut(s) 1584, 1947, 2631, 2693, 2861, 3325
MvnI CGCG 3 cut(s) 150, 2604, 2796
MwoI GCNNNNNNNGC 6 cut(s) 159, 685, 1408, 2351, 2956, 3314
NciI CCSGG 3 cut(s) 1278, 1937, 2306
NcoI CCATGG 2 cut(s) 1696, 2851
NdeI CATATG 4 cut(s) 1852, 2391, 2410, 2612
NlaIV GGNNCC 5 cut(s) 411, 2310, 2842, 2910, 3136
NmeAIII GCCGAG 1 cut(s) 1891
NmuCI GTSAC 4 cut(s) 281, 566, 2582, 3382
NsbI TGCGCA 2 cut(s) 278, 674
NspI RCATGY 5 cut(s) 679, 1109, 1695, 3256, 3397
NspV TTCGAA 2 cut(s) 143, 207
PaeI GCATGC 2 cut(s) 679, 3256
PagI TCATGA 2 cut(s) 1126, 1602
PciI ACATGT 1 cut(s) 1105
PciSI GCTCTTC 1 cut(s) 2940
PctI GAATGC 3 cut(s) 619, 890, 1231
PfeI GAWTC 9 cut(s) 620, 704, 763, 875, 1499, 2364, 2798, 2816, 3120
PflFI GACNNNGTC 1 cut(s) 1711
PfoI TCCNGGA 1 cut(s) 2304
PleI GAGTC 4 cut(s) 871, 2017, 3109, 3325
PmaCI CACGTG 1 cut(s) 1496
PmlI CACGTG 1 cut(s) 1496
PpsI GAGTC 4 cut(s) 871, 2017, 3109, 3325
Ppu21I YACGTR 2 cut(s) 1496, 1757
PscI ACATGT 1 cut(s) 1105
PshAI GACNNNNGTC 1 cut(s) 3348
PsiI TTATAA 1 cut(s) 1688
Psp6I CCWGG 6 cut(s) 1582, 1945, 2629, 2691, 2859, 3323
PspCI CACGTG 1 cut(s) 1496
PspFI CCCAGC 1 cut(s) 2864
PspGI CCWGG 6 cut(s) 1582, 1945, 2629, 2691, 2859, 3323
PspN4I GGNNCC 5 cut(s) 411, 2310, 2842, 2910, 3136
PspPI GGNCC 2 cut(s) 289, 2599
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 1589
PsuI RGATCY 6 cut(s) 1171, 1192, 2218, 2308, 2908, 2980
PsyI GACNNNGTC 1 cut(s) 1711
PvuII CAGCTG 2 cut(s) 1626, 2093
RsaI GTAC 5 cut(s) 93, 910, 1048, 1320, 1755
RsaNI GTAC 5 cut(s) 92, 909, 1047, 1319, 1754
RseI CAYNNNNRTG 2 cut(s) 1507, 1733
SapI GCTCTTC 1 cut(s) 2940
SaqAI TTAA 8 cut(s) 1536, 1644, 2145, 2531, 2568, 2940, 2952, 3442
Sau96I GGNCC 2 cut(s) 289, 2599
SchI GAGTC 4 cut(s) 872, 2017, 3110, 3325
ScrFI CCNGG 9 cut(s) 1278, 1584, 1937, 1947, 2306, 2631, 2693, 2861, 3325
SduI GDGCHC 7 cut(s) 579, 1261, 1303, 1495, 2652, 2845, 3235
SfcI CTRYAG 3 cut(s) 895, 957, 2643
SfuI TTCGAA 2 cut(s) 143, 207
SinI GGWCC 2 cut(s) 289, 2599
SmiMI CAYNNNNRTG 2 cut(s) 1507, 1733
SmlI CTYRAG 5 cut(s) 1090, 2144, 2325, 2530, 3212
SmoI CTYRAG 5 cut(s) 1090, 2144, 2325, 2530, 3212
SnaBI TACGTA 1 cut(s) 1757
SphI GCATGC 2 cut(s) 679, 3256
SspI AATATT 1 cut(s) 2198
SspMI CTAG 6 cut(s) 728, 860, 1442, 2228, 2361, 2913
StyD4I CCNGG 9 cut(s) 1276, 1582, 1935, 1945, 2304, 2629, 2691, 2859, 3323
StyI CCWWGG 3 cut(s) 1696, 2747, 2851
TaaI ACNGT 5 cut(s) 572, 988, 1386, 2785, 3350
TaiI ACGT 6 cut(s) 549, 1498, 1715, 1759, 2728, 3418
TaqI TCGA 7 cut(s) 137, 143, 207, 582, 919, 1003, 2991
TatI WGTACW 3 cut(s) 91, 908, 1318
TauI GCSGC 4 cut(s) 11, 14, 72, 153
TfiI GAWTC 9 cut(s) 620, 704, 763, 875, 1499, 2364, 2798, 2816, 3120
Tru1I TTAA 8 cut(s) 1536, 1644, 2145, 2531, 2568, 2940, 2952, 3442
Tru9I TTAA 8 cut(s) 1536, 1644, 2145, 2531, 2568, 2940, 2952, 3442
TscAI CASTG 8 cut(s) 286, 379, 577, 993, 1057, 1299, 1441, 3324
TseFI GTSAC 4 cut(s) 281, 566, 2582, 3382
TseI GCWGC 8 cut(s) 167, 271, 274, 775, 1942, 2093, 3286, 3305
Tsp45I GTSAC 4 cut(s) 281, 566, 2582, 3382
TspGWI ACGGA 2 cut(s) 220, 373
TspRI CASTG 8 cut(s) 286, 379, 577, 993, 1057, 1299, 1441, 3324
Tth111I GACNNNGTC 1 cut(s) 1711
Vha464I CTTAAG 2 cut(s) 2144, 2530
VneI GTGCAC 1 cut(s) 2648
VpaK11BI GGWCC 2 cut(s) 289, 2599
XagI CCTNNNNNAGG 1 cut(s) 1659
XapI RAATTY 7 cut(s) 77, 1122, 1243, 2032, 2081, 2176, 2467
XbaI TCTAGA 1 cut(s) 2360
XceI RCATGY 5 cut(s) 679, 1109, 1695, 3256, 3397
XcmI CCANNNNNNNNNTGG 1 cut(s) 3316
XmiI GTMKAC 1 cut(s) 1879
XspI CTAG 6 cut(s) 728, 860, 1442, 2228, 2361, 2913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.