Rmu_sc0001112.1_g000004

ZnF_TTF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001112.1
OG0000122
Physical Location & Seq
Forward (+)
18903 .. 23027
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001112.1_g000004.1.cds

Sequence Viewer

Length: 1164 bp
atgaaaaagtcatccacacagaagacacttgataaatggtttactaaaacaaaaacacccgaaaacgccgaatctagtgctaccttaccacagtctgatgttgagactcaagaggctaaaaatcgtgctaaattttcaagaattgaaatcaatgaaattcatattgattcactagaacgtgatccgggaaaacgtccgcaaatttgggaatatcatcctaatctgcaagatgaagtccgacgtgcttatattaaacttggtccataccagcctttactttcatcatatccgccaaaaggaaagcacaaccgtagctttcaatcttcgtggtttgcactattttcttcatggttagaatattctccgactgaagataaagctttttgtctaccgtgttttctttttaataagcccaccggccattccggccacaaagctttcactattcaaggatttcaaagttggaagaaggtaagagatggaaagggttgtgtttttcttagtcatatgggtaaagattctgactcttttcataaaaatgctgtaagagcctgtgacgacttgatgaagcaaccccagcatatacagaatgctgttgaaaattatacttcaaaacaaattgcagacaaccgtctacgagtcaaaacttcaattgaagaagttcgatggcttgcatttcaaggttgtgcttttagaggtcatgatgaaagcgttgattcaatcaatcctgtaagagtaaaaaaggccatttgggaagaaattgatgattcaaaattttgcataattgttgatgaagctcgtgatgagtcaaggaaagagcaaatggctatagtattgagatttgttgacaaagatggttttattcgggagcctttttttggacttgttcatgtctcagacaccaaggcatcaacattgcaaaaggttgcctccagctccaagctccttccctcatcctcttctctcagatcgaccacggcctcttcctcttgtctcagatctaggttgcctccagctccaagctccttccctcatcctcttctctcagatcgaccacggcctcttcctcttgtctcagatctaggttgcctccagctccaagctccttccctcatcctcttctctcagatcgaccacggcctcttcctcttgtctcagatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

387

Amino Acids

43.96

Weight (kDa)

9.05

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 388, 634
AciI CCGC 2 cut(s) 197, 290
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 418, 427
AcsI RAATTY 4 cut(s) 131, 156, 201, 773
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 296, 878
AjiI CACGTC 1 cut(s) 242
Alw26I GTCTC 5 cut(s) 98, 898, 998, 1078, 1158
AlwI GGATC 1 cut(s) 176
AoxI GGCC 6 cut(s) 418, 427, 744, 978, 1058, 1138
ApoI RAATTY 4 cut(s) 131, 156, 201, 773
Asp700I GAANNNNTTC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 260
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 29
BccI CCATC 3 cut(s) 473, 660, 848
BceAI ACGGC 3 cut(s) 993, 1073, 1153
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 5 cut(s) 98, 898, 998, 1078, 1158
BfaI CTAG 5 cut(s) 75, 173, 1002, 1082, 1162
BfmI CTRYAG 1 cut(s) 828
BglI GCCNNNNNGGC 1 cut(s) 426
BglII AGATCT 3 cut(s) 998, 1078, 1158
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 917
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 3 cut(s) 916, 996, 1076
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 903, 975, 1055, 1135
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 878
Bse118I RCCGGY 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 914
BseDI CCNNGG 4 cut(s) 903, 975, 1055, 1135
BseGI GGATG 5 cut(s) 11, 214, 953, 1033, 1113
BseLI CCNNNNNNNGG 2 cut(s) 296, 878
BseMI GCAATG 1 cut(s) 914
BseMII CTCAG 6 cut(s) 909, 979, 1009, 1059, 1089, 1139
BseYI CCCAGC 1 cut(s) 576
BshFI GGCC 6 cut(s) 420, 429, 746, 980, 1060, 1140
BsiSI CCGG 3 cut(s) 185, 417, 426
BslI CCNNNNNNNGG 2 cut(s) 296, 878
BsmAI GTCTC 5 cut(s) 98, 898, 998, 1078, 1158
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 6 cut(s) 420, 429, 746, 980, 1060, 1140
Bsp143I GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
BspACI CCGC 2 cut(s) 197, 290
BspANI GGCC 6 cut(s) 420, 429, 746, 980, 1060, 1140
BspCNI CTCAG 6 cut(s) 908, 978, 1008, 1058, 1088, 1138
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 870
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 914
BsrFI RCCGGY 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 4 cut(s) 903, 975, 1055, 1135
BssMI GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 903
Bst2BI CACGAG 1 cut(s) 798
Bst4CI ACNGT 4 cut(s) 93, 311, 393, 632
Bst6I CTCTTC 6 cut(s) 964, 988, 1044, 1068, 1124, 1148
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 8 cut(s) 500, 895, 965, 995, 1045, 1075, 1125, 1155
BstDSI CCRYGG 3 cut(s) 975, 1055, 1135
BstF5I GGATG 5 cut(s) 11, 214, 953, 1033, 1113
BstKTI GATC 7 cut(s) 184, 971, 1001, 1051, 1081, 1131, 1161
BstMAI GTCTC 5 cut(s) 98, 898, 998, 1078, 1158
BstMBI GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
BstMWI GCNNNNNNNGC 3 cut(s) 426, 548, 577
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 828
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 3 cut(s) 998, 1078, 1158
BstYI RGATCY 3 cut(s) 998, 1078, 1158
BsuRI GGCC 6 cut(s) 420, 429, 746, 980, 1060, 1140
BtgI CCRYGG 3 cut(s) 975, 1055, 1135
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 5 cut(s) 11, 214, 953, 1033, 1113
Cac8I GCNNGC 1 cut(s) 672
CciI TCATGA 1 cut(s) 700
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 3 cut(s) 348, 701, 890
DdeI CTNAG 8 cut(s) 500, 895, 965, 995, 1045, 1075, 1125, 1155
DpnI GATC 7 cut(s) 183, 970, 1000, 1050, 1080, 1130, 1160
DpnII GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
EaeI YGGCCR 2 cut(s) 418, 427
Eam1104I CTCTTC 6 cut(s) 964, 988, 1044, 1068, 1124, 1148
EarI CTCTTC 6 cut(s) 964, 988, 1044, 1068, 1124, 1148
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 903
FaeI CATG 3 cut(s) 351, 704, 893
FatI CATG 3 cut(s) 347, 700, 889
FauNDI CATATG 1 cut(s) 507
FblI GTMKAC 2 cut(s) 388, 634
FokI GGATG 4 cut(s) 201, 940, 1020, 1100
FspBI CTAG 5 cut(s) 75, 173, 1002, 1082, 1162
GsaI CCCAGC 1 cut(s) 580
GsuI CTGGAG 3 cut(s) 916, 996, 1076
HaeIII GGCC 6 cut(s) 420, 429, 746, 980, 1060, 1140
HapII CCGG 3 cut(s) 185, 417, 426
Hin1II CATG 3 cut(s) 351, 704, 893
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HindIII AAGCTT 2 cut(s) 378, 435
HinfI GANTC 9 cut(s) 71, 106, 167, 518, 524, 639, 716, 767, 806
HpaII CCGG 3 cut(s) 185, 417, 426
Hpy166II GTNNAC 4 cut(s) 42, 389, 635, 847
Hpy188III TCNNGA 5 cut(s) 110, 138, 701, 800, 866
Hpy8I GTNNAC 4 cut(s) 42, 389, 635, 847
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 4 cut(s) 463, 956, 1036, 1116
HpyCH4III ACNGT 4 cut(s) 93, 311, 393, 632
HpyCH4IV ACGT 3 cut(s) 178, 193, 241
HpyCH4V TGCA 6 cut(s) 226, 335, 623, 674, 780, 919
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 548, 577
HpyF3I CTNAG 8 cut(s) 500, 895, 965, 995, 1045, 1075, 1125, 1155
HpySE526I ACGT 3 cut(s) 178, 193, 241
Hsp92II CATG 3 cut(s) 351, 704, 893
Kzo9I GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
LmnI GCTCC 7 cut(s) 868, 941, 948, 1021, 1028, 1101, 1108
LweI GCATC 1 cut(s) 917
MaeI CTAG 5 cut(s) 75, 173, 1002, 1082, 1162
MaeII ACGT 3 cut(s) 178, 193, 241
MaeIII GTNAC 1 cut(s) 554
MalI GATC 7 cut(s) 183, 970, 1000, 1050, 1080, 1130, 1160
MboI GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 3 cut(s) 998, 1078, 1158
MlyI GAGTC 4 cut(s) 100, 518, 648, 815
MmeI TCCRAC 3 cut(s) 262, 389, 443
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 2 cut(s) 252, 405
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 3 cut(s) 185, 417, 426
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 595
MwoI GCNNNNNNNGC 3 cut(s) 426, 548, 577
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 507
NdeII GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
NlaIII CATG 3 cut(s) 351, 704, 893
NlaIV GGNNCC 1 cut(s) 870
NmuCI GTSAC 1 cut(s) 554
PagI TCATGA 1 cut(s) 700
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 5 cut(s) 71, 167, 518, 716, 767
PfoI TCCNGGA 1 cut(s) 184
PleI GAGTC 4 cut(s) 100, 518, 647, 814
PpsI GAGTC 4 cut(s) 100, 518, 647, 814
PshAI GACNNNNGTC 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 3 cut(s) 998, 1078, 1158
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 252, 405
Sau3AI GATC 7 cut(s) 181, 968, 998, 1048, 1078, 1128, 1158
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 4 cut(s) 100, 518, 648, 815
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 1 cut(s) 917
SfcI CTRYAG 1 cut(s) 828
SfiI GGCCNNNNNGGCC 1 cut(s) 426
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SsiI CCGC 2 cut(s) 197, 290
SspI AATATT 1 cut(s) 359
SspMI CTAG 5 cut(s) 75, 173, 1002, 1082, 1162
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 4 cut(s) 93, 311, 393, 632
TaiI ACGT 3 cut(s) 181, 196, 244
TaqI TCGA 4 cut(s) 664, 971, 1051, 1131
TfiI GAWTC 5 cut(s) 71, 167, 518, 716, 767
Tru1I TTAA 2 cut(s) 252, 405
Tru9I TTAA 2 cut(s) 252, 405
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 4 cut(s) 131, 156, 201, 773
XmiI GTMKAC 2 cut(s) 388, 634
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 5 cut(s) 75, 173, 1002, 1082, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.