MD12G1083800.v1.1

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000122
Physical Location & Seq
Forward (+)
10221905 .. 10225316
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1083800.v1.1.491

Sequence Viewer

Length: 2463 bp
ATGGTATATTTAGGCTGTTTGTTTGGAAAGAAGAGCCCCCAGTCAGTGGCGGATCCACAGTGGGGTCATTGGGGTCGCGCGACCCCTTGGAAGCCATGGAAGCAACCTTCGAGACCCCTTGGAGATGGTGGGGCGACCCCTGGTGCGACCCCGTTGCCGTTGGAGTCGTCGGTTTTCTGGACAGGAGGACGAACGAAGAAGACGAAGGCGCTGTGCGCCAGTTTTGATTTTGAAAAAACCTGGGCAAAACGACGTCGTTTTGGGCCAGGCCGAAAAAAAAAAAAAAAAAAAAAAAAATTCCCACCGTGTCCCTCCCCATCCCAGCCCTTCCTACCCGATCCCTATACAATTAAAAGCCCCAAATTTTCATCCTTCAACCCTAACTCAATCCCCCCAAATCCTCAACTCCTCTCCTCCATAGCTGCTGCCGCCCCCAACGTGAACTCCATCTCCTCCCTCCTCTGCTGGTGGCTCCAACTCCATCTCCTCCCTCCTCTGCTGGCGGCTCCAACTCCATCTCCTCCCTTGCAAGCATTATTATGGAACGGTTTTTTTAAGAGAAAGTCATCATCGGGTTCGGGTAGTTCGAATAATGTTGATAGTTCAAATACTGTTGGTAGTTCAAGAACTCCAAGTTCAAGACAAAGTCAGTTAGATGATGTTTTGGGTAATCTTCAAGCGGATCCTGGATTAAGAACTCGAATAATAGATTATGACGCTAATTTGAGAGATGAGGTCCGAAGATTATATCTACAAAAAGGACCTTGTCAACCTAGAGGTCATAATTTCCCAATAACTAATATGTCGGGAATTAATCGACGCTTCATTCCCCAATGGTTTGATGAGTTTGATTGGTTGGAGTATAGTGTATCTAAAGATGCGGCATTTTCTTTCACTGGAGATGGATTTAAGAATTGGAAGAAAGGGAGAGAAAGATTTAAGATGCATGTTGGACCGGTTGGGAGTGTTCATAATAAGGCTAGAGAAGCTGCTACAAATTTGATGAATCAAGCTACACATATTGAAACGGCAGTGAGCAAACACTCTGACCAAACTCGTAAGGCTTATCGCACATGCTTGATTGCTTCAATCAAGTGCACTAAGTTTTTATTGCGACAAGGTCTTCCTTTTCGTGGCCATGATGAAAGTGCCACTTCAAGCAATAGGGGAAATTACTTGGAGTTATTGCAATTCCTTGCAGATAATCATGATAAAGTTAGAGAAGTTGTGATGGAAAATGCTCCGGGGAATCTCAAATTACTAGCTCCTTCCATTCAAAAAGAAATTGTGAATTCATGTGCCCTTGAAACACTTGATGCTATCATGGATGGTCTAAAAGATAAATTCTTTTCAATATTGGTGGATGAAGCACGTGATGTGTCTGTGAAAGAGCAAATGGCTATGGTGTTGCGTTATCTACGAGGACAAGGTTATGATGGTGCTAGCAATATGAGAGGTGAGTTGAATGGCCTTAAAACAAAGATATTGAGAGAACAACCTTGTGCATATTATGTTCATTGCTTTGTTCATCAACTTCAACTAGCTCTTGTTGCCGTAGCAAAGAATAATATAGACATTGCCTCTTTTTTTGCAACGGCTAATAATGTGGTTAATCATGTTGGAGCATCTTGTAAGCGGCGTGATTCACTTAGAGGGCAACTTCAAGAAGAGCTTGTGATAGCTTTTGAAAATGATTGTCTTATAACGGGGCGAGGCTTAAATCAAGAAACAAGTCTCAAACGTGCCGGTGACATACGATGGAACTCACACTCACACTATGGTACCTTGATTAGCATCATTTCTATGTTTTCATCCGTGGTTCATGTGCTTCAAATGGTTATTGATGATAATCCCAATGAAAGTGTGGGTGAAGCAAATACGTTAATGAGAGTGATACTTACTTTTGAGTTTGTGTTTCACTTTTTCTTGATGAAAGTCATATTGGGACTCACAAATGATTTGTCACAAGCATTGCAAAGGAAAGATCAAGAAATTGTGAATGCAATGGCTTTAGTGAAATCATGCAAGGAAAAGCTATATTGGATGAGGAATAATGGGTTCGATGCATTGGTTGATGAAGTATCTTCTTTTTGTGAAAAACATCATATTGATGTTCCTAACATGGAAGAGGCATTTATACTTCCAGGGAGGTCAAGGCGTTATGCTCCAATAAAGACAAATCGTCATCATTATCGTGTGGAGCTCTTTATTTATGTCATTGATGAGCAAATTACGGAGTTAGAGGATCGCTTTAATGAGGGATTGGTGATCTTGCAAAAAAAATGGTGGAGACAAGGATGCATCAAGTATTCAATTATGTATATTACATTGTCTTTAGTTTTACCAGTTGCAACTGCTTCAGTGGAGAGAGCATTTTCTGTCATGAATATTGTTAAGGGTCCACTTAGGAACAAAATGGGAGATCAATGGTTGAGTGATAGCTTGCTTGTTTATATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

821

Amino Acids

92.49

Weight (kDa)

9.41

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 297 - 472 2.4e-42 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1703
AatII GACGTC 1 cut(s) 256
Acc65I GGTACC 1 cut(s) 1781
AccB1I GGYRCC 1 cut(s) 1781
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 2 cut(s) 78, 80
AciI CCGC 6 cut(s) 50, 429, 503, 680, 881, 1636
AclWI GGATC 6 cut(s) 47, 60, 332, 677, 690, 2253
AcoI YGGCCR 1 cut(s) 1135
AcsI RAATTY 5 cut(s) 296, 362, 997, 1291, 1343
AcuI CTGAAG 1 cut(s) 2343
AcvI CACGTG 1 cut(s) 1373
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 1783
AfiI CCNNNNNNNGG 3 cut(s) 46, 62, 1133
AgeI ACCGGT 1 cut(s) 955
AhdI GACNNNNNGTC 1 cut(s) 2181
AjnI CCWGG 5 cut(s) 139, 239, 265, 685, 2143
AjuI GAANNNNNNNTTGG 2 cut(s) 1925, 1957
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
Alw21I GWGCWC 2 cut(s) 1100, 2205
Alw26I GTCTC 3 cut(s) 106, 1739, 2284
Alw44I GTGCAC 1 cut(s) 1096
AlwI GGATC 6 cut(s) 47, 60, 332, 677, 690, 2253
AoxI GGCC 4 cut(s) 263, 268, 1135, 1468
ApaLI GTGCAC 1 cut(s) 1096
ApeKI GCWGC 3 cut(s) 422, 425, 989
ApoI RAATTY 5 cut(s) 296, 362, 997, 1291, 1343
ArsI GACNNNNNNTTYG 2 cut(s) 1946, 1978
AseI ATTAAT 1 cut(s) 813
AsiGI ACCGGT 1 cut(s) 955
Asp718I GGTACC 1 cut(s) 1781
AspLEI GCGC 3 cut(s) 80, 211, 218
AspS9I GGNCC 5 cut(s) 263, 736, 761, 953, 2399
AsuC2I CCSGG 1 cut(s) 1245
AsuHPI GGTGA 4 cut(s) 1469, 1760, 1880, 2278
AsuII TTCGAA 1 cut(s) 587
AsuNHI GCTAGC 1 cut(s) 1442
AvaII GGWCC 4 cut(s) 736, 761, 953, 2399
BaeGI GKGCMC 2 cut(s) 1100, 1303
BaeI ACNNNNGTAYC 2 cut(s) 1765, 1798
BalI TGGCCA 1 cut(s) 1137
BamHI GGATCC 2 cut(s) 52, 682
BanI GGYRCC 1 cut(s) 1781
BanII GRGCYC 2 cut(s) 38, 2205
BbrPI CACGTG 1 cut(s) 1373
BbsI GAAGAC 2 cut(s) 206, 1115
Bbv12I GWGCWC 2 cut(s) 1100, 2205
BbvI GCAGC 3 cut(s) 409, 412, 976
BceAI ACGGC 4 cut(s) 142, 1044, 1538, 1611
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 5 cut(s) 141, 241, 267, 687, 2145
BcnI CCSGG 1 cut(s) 1245
BcoDI GTCTC 3 cut(s) 106, 1739, 2284
BfaI CTAG 5 cut(s) 774, 981, 1262, 1443, 1541
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 7 cut(s) 423, 426, 429, 504, 882, 990, 1637
BlsI GCNGC 7 cut(s) 424, 427, 430, 505, 883, 991, 1638
Bme1390I CCNGG 6 cut(s) 141, 241, 267, 687, 1245, 2145
Bme18I GGWCC 4 cut(s) 736, 761, 953, 2399
BmeRI GACNNNNNGTC 1 cut(s) 2181
BmgT120I GGNCC 5 cut(s) 263, 736, 761, 953, 2399
BmiI GGNNCC 6 cut(s) 54, 473, 507, 684, 1783, 2400
BmrFI CCNGG 6 cut(s) 141, 241, 267, 687, 1245, 2145
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 8 cut(s) 868, 933, 1306, 1634, 1803, 2053, 2288, 2310
BmtI GCTAGC 1 cut(s) 1446
BmuI ACTGGG 1 cut(s) 34
BpiI GAAGAC 2 cut(s) 206, 1115
BpmI CTGGAG 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 1245
BsaAI YACGTR 1 cut(s) 1373
BsaBI GATNNNNATC 2 cut(s) 1793, 1848
BsaHI GRCGYC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 8 cut(s) 86, 95, 118, 139, 240, 1244, 1815, 2144
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 8 cut(s) 428, 434, 458, 464, 468, 498, 502, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 62, 1133
Bse118I RCCGGY 2 cut(s) 955, 1745
Bse1I ACTGG 4 cut(s) 40, 219, 901, 2345
Bse3DI GCAATG 4 cut(s) 1516, 1575, 1970, 2010
Bse8I GATNNNNATC 2 cut(s) 1793, 1848
BseBI CCWGG 5 cut(s) 141, 241, 267, 687, 2145
BseDI CCNNGG 8 cut(s) 86, 95, 118, 139, 240, 1244, 1815, 2144
BseGI GGATG 7 cut(s) 317, 368, 1333, 1369, 1811, 2049, 2303
BseJI GATNNNNATC 2 cut(s) 1793, 1848
BseLI CCNNNNNNNGG 3 cut(s) 46, 62, 1133
BseMI GCAATG 4 cut(s) 1516, 1575, 1970, 2010
BseNI ACTGG 4 cut(s) 40, 219, 901, 2345
BseRI GAGGAG 7 cut(s) 398, 403, 442, 449, 476, 483, 510
BseSI GKGCMC 2 cut(s) 1100, 1303
BseXI GCAGC 3 cut(s) 409, 412, 976
BseYI CCCAGC 1 cut(s) 321
Bsh1236I CGCG 2 cut(s) 78, 80
BshFI GGCC 4 cut(s) 265, 270, 1137, 1470
BshNI GGYRCC 1 cut(s) 1781
BshTI ACCGGT 1 cut(s) 955
BsiHKAI GWGCWC 2 cut(s) 1100, 2205
BsiSI CCGG 3 cut(s) 956, 1244, 1746
BslFI GGGAC 2 cut(s) 294, 1959
BslI CCNNNNNNNGG 3 cut(s) 46, 62, 1133
BsmAI GTCTC 3 cut(s) 106, 1739, 2284
BsmFI GGGAC 2 cut(s) 294, 1959
BsmI GAATGC 1 cut(s) 2005
BsnI GGCC 4 cut(s) 265, 270, 1137, 1470
Bso31I GGTCTC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 38, 1100, 1303, 2205
Bsp143I GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 6 cut(s) 50, 429, 503, 680, 881, 1636
BspANI GGCC 4 cut(s) 265, 270, 1137, 1470
BspFNI CGCG 2 cut(s) 78, 80
BspHI TCATGA 2 cut(s) 1207, 2382
BspLI GGNNCC 6 cut(s) 54, 473, 507, 684, 1783, 2400
BspOI GCTAGC 1 cut(s) 1446
BspPI GGATC 6 cut(s) 47, 60, 332, 677, 690, 2253
BspQI GCTCTTC 2 cut(s) 26, 1662
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 1781
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 4 cut(s) 1516, 1575, 1970, 2010
BsrFI RCCGGY 2 cut(s) 955, 1745
BsrI ACTGG 4 cut(s) 40, 219, 901, 2345
BssAI RCCGGY 2 cut(s) 955, 1745
BssECI CCNNGG 8 cut(s) 86, 95, 118, 139, 240, 1244, 1815, 2144
BssMI GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 3 cut(s) 86, 95, 118
Bst2UI CCWGG 5 cut(s) 141, 241, 267, 687, 2145
Bst4CI ACNGT 4 cut(s) 60, 306, 548, 613
Bst6I CTCTTC 3 cut(s) 26, 1662, 2121
BstACI GRCGYC 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 1373
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 4 cut(s) 501, 531, 1444, 2444
BstDEI CTNAG 3 cut(s) 1101, 1649, 2405
BstDSI CCRYGG 2 cut(s) 95, 1815
BstF5I GGATG 7 cut(s) 317, 368, 1333, 1369, 1811, 2049, 2303
BstFNI CGCG 2 cut(s) 78, 80
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 3 cut(s) 80, 211, 218
BstKTI GATC 7 cut(s) 55, 340, 685, 1987, 2248, 2271, 2425
BstMAI GTCTC 3 cut(s) 106, 1739, 2284
BstMBI GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
BstMWI GCNNNNNNNGC 5 cut(s) 100, 215, 428, 986, 1550
BstNI CCWGG 5 cut(s) 141, 241, 267, 687, 2145
BstNSI RCATGY 2 cut(s) 950, 1077
BstSCI CCNGG 6 cut(s) 139, 239, 265, 685, 1243, 2143
BstSLI GKGCMC 2 cut(s) 1100, 1303
BstUI CGCG 2 cut(s) 78, 80
BstV1I GCAGC 3 cut(s) 409, 412, 976
BstV2I GAAGAC 2 cut(s) 206, 1115
BstX2I RGATCY 2 cut(s) 52, 682
BstYI RGATCY 2 cut(s) 52, 682
BsuRI GGCC 4 cut(s) 265, 270, 1137, 1470
BtgI CCRYGG 2 cut(s) 95, 1815
BtsCI GGATG 7 cut(s) 317, 368, 1333, 1369, 1811, 2049, 2303
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 5 cut(s) 51, 65, 894, 1038, 2367
Cac8I GCNNGC 4 cut(s) 501, 531, 1444, 2444
CciI TCATGA 2 cut(s) 1207, 2382
CfoI GCGC 3 cut(s) 80, 211, 218
Cfr10I RCCGGY 2 cut(s) 955, 1745
Cfr13I GGNCC 5 cut(s) 263, 736, 761, 953, 2399
CseI GACGC 2 cut(s) 725, 828
Csp6I GTAC 1 cut(s) 1782
CspAI ACCGGT 1 cut(s) 955
CspCI CAANNNNNGTGG 2 cut(s) 1341, 1376
CviQI GTAC 1 cut(s) 1782
DdeI CTNAG 3 cut(s) 1101, 1649, 2405
DpnI GATC 7 cut(s) 54, 339, 684, 1986, 2247, 2270, 2424
DpnII GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
DriI GACNNNNNGTC 1 cut(s) 2181
EaeI YGGCCR 1 cut(s) 1135
Eam1104I CTCTTC 3 cut(s) 26, 1662, 2121
Eam1105I GACNNNNNGTC 1 cut(s) 2181
EarI CTCTTC 3 cut(s) 26, 1662, 2121
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 2203
Eco130I CCWWGG 3 cut(s) 86, 95, 118
Eco24I GRGCYC 2 cut(s) 38, 2205
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 4 cut(s) 736, 761, 953, 2399
Eco53kI GAGCTC 1 cut(s) 2203
Eco57I CTGAAG 1 cut(s) 2343
Eco72I CACGTG 1 cut(s) 1373
EcoICRI GAGCTC 1 cut(s) 2203
EcoO109I RGGNCCY 1 cut(s) 761
EcoRI GAATTC 1 cut(s) 1291
EcoRII CCWGG 5 cut(s) 139, 239, 265, 685, 2143
EcoT14I CCWWGG 3 cut(s) 86, 95, 118
EcoT22I ATGCAT 3 cut(s) 948, 2068, 2303
EcoT38I GRGCYC 2 cut(s) 38, 2205
ErhI CCWWGG 3 cut(s) 86, 95, 118
FalI AAGNNNNNCTT 4 cut(s) 1138, 1170, 1656, 1688
FaqI GGGAC 2 cut(s) 294, 1959
Fnu4HI GCNGC 7 cut(s) 423, 426, 429, 504, 882, 990, 1637
FokI GGATG 7 cut(s) 304, 355, 1340, 1376, 1798, 2056, 2310
FriOI GRGCYC 2 cut(s) 38, 2205
Fsp4HI GCNGC 7 cut(s) 423, 426, 429, 504, 882, 990, 1637
FspBI CTAG 5 cut(s) 774, 981, 1262, 1443, 1541
GlaI GCGC 3 cut(s) 79, 210, 217
GluI GCNGC 7 cut(s) 423, 426, 429, 504, 882, 990, 1637
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 4 cut(s) 265, 270, 1137, 1470
HapII CCGG 3 cut(s) 956, 1244, 1746
HgaI GACGC 2 cut(s) 725, 828
HhaI GCGC 3 cut(s) 80, 211, 218
Hin1I GRCGYC 1 cut(s) 253
Hin6I GCGC 3 cut(s) 78, 209, 216
HinP1I GCGC 3 cut(s) 78, 209, 216
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HinfI GANTC 5 cut(s) 164, 1006, 1249, 1643, 1947
HpaII CCGG 3 cut(s) 956, 1244, 1746
HphI GGTGA 4 cut(s) 1469, 1760, 1880, 2278
Hpy166II GTNNAC 4 cut(s) 442, 770, 1098, 2402
Hpy188I TCNGA 2 cut(s) 740, 1048
Hpy8I GTNNAC 4 cut(s) 442, 770, 1098, 2402
Hpy99I CGWCG 4 cut(s) 172, 255, 258, 822
HpyAV CCTTC 5 cut(s) 117, 199, 337, 382, 1278
HpyCH4III ACNGT 4 cut(s) 60, 306, 548, 613
HpyCH4IV ACGT 5 cut(s) 253, 438, 1372, 1741, 1880
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 215, 428, 986, 1550
HpyF3I CTNAG 3 cut(s) 1101, 1649, 2405
HpySE526I ACGT 5 cut(s) 253, 438, 1372, 1741, 1880
Hsp92I GRCGYC 1 cut(s) 253
HspAI GCGC 3 cut(s) 78, 209, 216
KpnI GGTACC 1 cut(s) 1785
Kzo9I GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
LguI GCTCTTC 2 cut(s) 26, 1662
LmnI GCTCC 7 cut(s) 477, 511, 1246, 1270, 1622, 2170, 2200
Lsp1109I GCAGC 3 cut(s) 409, 412, 976
LweI GCATC 8 cut(s) 868, 933, 1306, 1634, 1803, 2053, 2288, 2310
MaeI CTAG 5 cut(s) 774, 981, 1262, 1443, 1541
MaeII ACGT 5 cut(s) 253, 438, 1372, 1741, 1880
MaeIII GTNAC 2 cut(s) 1748, 1962
MalI GATC 7 cut(s) 54, 339, 684, 1986, 2247, 2270, 2424
MboI GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
MflI RGATCY 2 cut(s) 52, 682
MhlI GDGCHC 4 cut(s) 38, 1100, 1303, 2205
MlsI TGGCCA 1 cut(s) 1137
MluNI TGGCCA 1 cut(s) 1137
MlyI GAGTC 2 cut(s) 173, 1941
MmeI TCCRAC 6 cut(s) 141, 499, 533, 837, 931, 1600
Mox20I TGGCCA 1 cut(s) 1137
Mph1103I ATGCAT 3 cut(s) 948, 2068, 2303
MscI TGGCCA 1 cut(s) 1137
MslI CAYNNNNRTG 4 cut(s) 538, 1802, 2109, 2193
Msp20I TGGCCA 1 cut(s) 1137
MspI CCGG 3 cut(s) 956, 1244, 1746
MspR9I CCNGG 6 cut(s) 141, 241, 267, 687, 1245, 2145
Mva1269I GAATGC 1 cut(s) 2005
MvaI CCWGG 5 cut(s) 141, 241, 267, 687, 2145
MvnI CGCG 2 cut(s) 78, 80
MwoI GCNNNNNNNGC 5 cut(s) 100, 215, 428, 986, 1550
NciI CCSGG 1 cut(s) 1245
NcoI CCATGG 1 cut(s) 95
NdeII GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
NheI GCTAGC 1 cut(s) 1442
NlaIV GGNNCC 6 cut(s) 54, 473, 507, 684, 1783, 2400
NmuCI GTSAC 2 cut(s) 1748, 1962
NsiI ATGCAT 3 cut(s) 948, 2068, 2303
NspI RCATGY 2 cut(s) 950, 1077
NspV TTCGAA 1 cut(s) 587
PagI TCATGA 2 cut(s) 1207, 2382
PciSI GCTCTTC 2 cut(s) 26, 1662
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 584
PctI GAATGC 1 cut(s) 2005
PfeI GAWTC 3 cut(s) 1006, 1249, 1643
PflFI GACNNNGTC 3 cut(s) 645, 765, 1119
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 955
PkrI GCNGC 7 cut(s) 424, 427, 430, 505, 883, 991, 1638
PleI GAGTC 2 cut(s) 172, 1941
PmaCI CACGTG 1 cut(s) 1373
PmlI CACGTG 1 cut(s) 1373
PpsI GAGTC 2 cut(s) 172, 1941
Ppu21I YACGTR 1 cut(s) 1373
PpuMI RGGWCCY 1 cut(s) 761
PshBI ATTAAT 1 cut(s) 813
PsiI TTATAA 1 cut(s) 1703
Psp124BI GAGCTC 1 cut(s) 2205
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 5 cut(s) 139, 239, 265, 685, 2143
PspCI CACGTG 1 cut(s) 1373
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 5 cut(s) 139, 239, 265, 685, 2143
PspN4I GGNNCC 6 cut(s) 54, 473, 507, 684, 1783, 2400
PspPI GGNCC 5 cut(s) 263, 736, 761, 953, 2399
PspPPI RGGWCCY 1 cut(s) 761
PsuI RGATCY 2 cut(s) 52, 682
PsyI GACNNNGTC 3 cut(s) 645, 765, 1119
RsaI GTAC 1 cut(s) 1783
RsaNI GTAC 1 cut(s) 1782
RseI CAYNNNNRTG 4 cut(s) 538, 1802, 2109, 2193
SacI GAGCTC 1 cut(s) 2205
SapI GCTCTTC 2 cut(s) 26, 1662
SatI GCNGC 7 cut(s) 423, 426, 429, 504, 882, 990, 1637
Sau3AI GATC 7 cut(s) 52, 337, 682, 1984, 2245, 2268, 2422
Sau96I GGNCC 5 cut(s) 263, 736, 761, 953, 2399
SchI GAGTC 2 cut(s) 173, 1941
ScrFI CCNGG 6 cut(s) 141, 241, 267, 687, 1245, 2145
SduI GDGCHC 4 cut(s) 38, 1100, 1303, 2205
SfaNI GCATC 8 cut(s) 868, 933, 1306, 1634, 1803, 2053, 2288, 2310
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 4 cut(s) 736, 761, 953, 2399
SmiMI CAYNNNNRTG 4 cut(s) 538, 1802, 2109, 2193
SsiI CCGC 6 cut(s) 50, 429, 503, 680, 881, 1636
SspI AATATT 2 cut(s) 1356, 2389
SspMI CTAG 5 cut(s) 774, 981, 1262, 1443, 1541
SstI GAGCTC 1 cut(s) 2205
StyD4I CCNGG 6 cut(s) 139, 239, 265, 685, 1243, 2143
StyI CCWWGG 3 cut(s) 86, 95, 118
TaaI ACNGT 4 cut(s) 60, 306, 548, 613
TaiI ACGT 5 cut(s) 256, 441, 1375, 1744, 1883
TaqI TCGA 5 cut(s) 110, 587, 700, 817, 2061
TauI GCSGC 4 cut(s) 431, 506, 884, 1639
TfiI GAWTC 3 cut(s) 1006, 1249, 1643
TscAI CASTG 5 cut(s) 51, 65, 901, 1038, 2367
TseFI GTSAC 2 cut(s) 1748, 1962
TseI GCWGC 3 cut(s) 422, 425, 989
Tsp45I GTSAC 2 cut(s) 1748, 1962
TspGWI ACGGA 2 cut(s) 1804, 2249
TspRI CASTG 5 cut(s) 51, 65, 901, 1038, 2367
Tth111I GACNNNGTC 3 cut(s) 645, 765, 1119
Van91I CCANNNNNTGG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 1096
VpaK11BI GGWCC 4 cut(s) 736, 761, 953, 2399
VspI ATTAAT 1 cut(s) 813
XapI RAATTY 5 cut(s) 296, 362, 997, 1291, 1343
XceI RCATGY 2 cut(s) 950, 1077
XcmI CCANNNNNNNNNTGG 1 cut(s) 1861
XspI CTAG 5 cut(s) 774, 981, 1262, 1443, 1541
ZraI GACGTC 1 cut(s) 254
Zsp2I ATGCAT 3 cut(s) 948, 2068, 2303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.