Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0000122

Physical Location & Seq

Genomic Coordinates Forward (+)

211083 .. 212041

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004283.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcttcgattccttatgaagatttgttcagcaactcaaggcgatcccctctgttcaagaatcacaagaaatggtggtctgtagctcgagatatcttggtcgatagctcgaatgctgcgagatcgacagttcccggtggtccaagtgtggcatgcagcacagcaaaagctgtggagtgggatgcggaatggtccaagaaccccgattcatctgatcttgctgcacttggtatacatgcagctgcgtatgaggaatccaaagatgtaaagactggaagtcttgtgggtgactctccacagaaacttgtaaaaggggttgcagagaaagttgctgcagtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

114

Amino Acids

12.16

Weight (kDa)

6.72

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca	FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica	MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica	Prupe.7G129800_v2.0.a1
pyrus_communis	pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis	RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata	RLG00000033957
rosa_multiflora	Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii	Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa	Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana	Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	58
AhdI	GACNNNNNGTC	1 cut(s)	276
AluBI	AGCT	4 cut(s)	86, 108, 170, 242
AluI	AGCT	4 cut(s)	86, 108, 170, 242
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	87
ApeKI	GCWGC	6 cut(s)	116, 156, 221, 239, 242, 332
AspS9I	GGNCC	2 cut(s)	140, 192
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	140, 192
BbvI	GCAGC	6 cut(s)	103, 168, 208, 229, 251, 319
BcnI	CCSGG	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	81, 333
BisI	GCNGC	6 cut(s)	117, 157, 222, 240, 243, 333
BlsI	GCNGC	6 cut(s)	118, 158, 223, 241, 244, 334
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	2 cut(s)	140, 192
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	140, 192
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	6 cut(s)	103, 168, 208, 229, 251, 319
BsgI	GTGCAG	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	44, 122, 214
BspACI	CCGC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	44, 122, 214
BssNAI	GTATAC	1 cut(s)	233
Bst1107I	GTATAC	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	47, 125, 217
BstMBI	GATC	3 cut(s)	44, 122, 214
BstNSI	RCATGY	2 cut(s)	156, 239
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	2 cut(s)	81, 333
BstV1I	GCAGC	6 cut(s)	103, 168, 208, 229, 251, 319
BstZ17I	GTATAC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	140, 192
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	2 cut(s)	153, 236
CviJI	RGCY	5 cut(s)	5, 86, 108, 170, 242
CviKI_1	RGCY	5 cut(s)	5, 86, 108, 170, 242
DpnI	GATC	3 cut(s)	46, 124, 216
DpnII	GATC	3 cut(s)	44, 122, 214
DriI	GACNNNNNGTC	1 cut(s)	276
Eam1105I	GACNNNNNGTC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	140, 192
Eco88I	CYCGRG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	2 cut(s)	156, 239
FaiI	YATR	5 cut(s)	18, 154, 233, 237, 249
FatI	CATG	2 cut(s)	152, 235
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	117, 157, 222, 240, 243, 333
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	117, 157, 222, 240, 243, 333
GluI	GCNGC	6 cut(s)	117, 157, 222, 240, 243, 333
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	156, 239
HinfI	GANTC	5 cut(s)	10, 61, 206, 254, 290
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	58, 89
Hpy8I	GTNNAC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	156, 224, 239, 320, 335
Hsp92II	CATG	2 cut(s)	156, 239
Kzo9I	GATC	3 cut(s)	44, 122, 214
LpnPI	CCDG	2 cut(s)	148, 258
Lsp1109I	GCAGC	6 cut(s)	103, 168, 208, 229, 251, 319
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	46, 124, 216
MboI	GATC	3 cut(s)	44, 122, 214
MboII	GAAGA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	60, 244
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	44, 122, 214
NlaIII	CATG	2 cut(s)	156, 239
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	2 cut(s)	156, 239
PaeI	GCATGC	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	10, 61, 206, 254
PkrI	GCNGC	6 cut(s)	118, 158, 223, 241, 244, 334
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	140, 192
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	242
SatI	GCNGC	6 cut(s)	117, 157, 222, 240, 243, 333
Sau3AI	GATC	3 cut(s)	44, 122, 214
Sau96I	GGNCC	2 cut(s)	140, 192
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	4 cut(s)	88, 110, 172, 244
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	81, 333
Sfr274I	CTCGAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	140, 192
SlaI	CTCGAG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	37, 87
SmoI	CTYRAG	2 cut(s)	37, 87
SphI	GCATGC	1 cut(s)	156
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	5 cut(s)	8, 88, 102, 110, 125
TfiI	GAWTC	4 cut(s)	10, 61, 206, 254
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	6 cut(s)	116, 156, 221, 239, 242, 332
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	33, 198
VpaK11BI	GGWCC	2 cut(s)	140, 192
XceI	RCATGY	2 cut(s)	156, 239
XhoI	CTCGAG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.