RchiOBHm_Chr5g0064161

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
70014163 .. 70017165
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34021

Sequence Viewer

Length: 393 bp
ATGTCAAATCATGAGCCAAAACCGAAGCGATCAAAATTCATTGACACATGGTTTAAAAGAACAAATGTTGAGTCTTCAAGTTCAAATGTGGTTTCTGAACCTTCCATATCCTTTCCAAATATTGATGTTGAACCTCAACCTTCCATTCCTGAACCACAAAATAATATCAACGCTCTTGAACGTGATCCTGGATTACGTTGTGCCATATGGAAATATCCAGTGAATGAGCGTGATAGCATTCGAAAAACCTATGTTTTAAACAAGATGGAAGATGAGTTTCTTGGTGATTGTATGGTCCTTCACATTGAGAAGGAATATGCTGAATCTATTGACAATGAATCGGTGATCAAAGACTTTGAAGCTTGTGGAACTCGTAGAGTTAGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

15.06

Weight (kDa)

5.26

Isoelectric Point (pI)

77.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 35
AgsI TTSAA 5 cut(s) 78, 84, 131, 179, 359
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
AlwI GGATC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 296, 355
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 218
BsmI GAATGC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 29, 184, 345
BspHI TCATGA 1 cut(s) 10
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 218
BssMI GATC 3 cut(s) 29, 184, 345
Bst2UI CCWGG 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 241
BstKTI GATC 3 cut(s) 32, 187, 348
BstMBI GATC 3 cut(s) 29, 184, 345
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 295
CviAII CATG 2 cut(s) 11, 48
CviJI RGCY 2 cut(s) 16, 362
CviKI_1 RGCY 2 cut(s) 16, 362
DpnI GATC 3 cut(s) 31, 186, 347
DpnII GATC 3 cut(s) 29, 184, 345
DraI TTTAAA 2 cut(s) 55, 258
Eco47I GGWCC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 14, 51
FaiI YATR 8 cut(s) 12, 49, 107, 206, 208, 252, 293, 318
FatI CATG 2 cut(s) 10, 47
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 345
Hin1II CATG 2 cut(s) 14, 51
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 71, 323, 338
HphI GGTGA 2 cut(s) 296, 355
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 11, 149, 176
HpyAV CCTTC 4 cut(s) 111, 150, 304, 308
HpyCH4IV ACGT 2 cut(s) 181, 196
HpySE526I ACGT 2 cut(s) 181, 196
Hsp92II CATG 2 cut(s) 14, 51
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 3 cut(s) 29, 184, 345
LpnPI CCDG 4 cut(s) 162, 174, 201, 231
MaeII ACGT 2 cut(s) 181, 196
MalI GATC 3 cut(s) 31, 186, 347
MboI GATC 3 cut(s) 29, 184, 345
MboII GAAGA 2 cut(s) 66, 281
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 1 cut(s) 144
MseI TTAA 2 cut(s) 54, 257
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 206
NdeII GATC 3 cut(s) 29, 184, 345
NlaIII CATG 2 cut(s) 14, 51
NspV TTCGAA 1 cut(s) 241
PagI TCATGA 1 cut(s) 10
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 323, 338
PfoI TCCNGGA 1 cut(s) 187
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 54, 257
Sau3AI GATC 3 cut(s) 29, 184, 345
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 189
SetI ASST 7 cut(s) 103, 136, 142, 184, 199, 251, 364
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 295
Sse9I AATT 1 cut(s) 35
SspI AATATT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 187
TaiI ACGT 2 cut(s) 184, 199
TaqI TCGA 1 cut(s) 241
TasI AATT 1 cut(s) 35
TfiI GAWTC 2 cut(s) 323, 338
Tru1I TTAA 2 cut(s) 54, 257
Tru9I TTAA 2 cut(s) 54, 257
TscAI CASTG 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 28, 351
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.